├── .gitignore ├── Dockerfile ├── LICENSE ├── README.md ├── example_basic_usage.ipynb ├── experiments_and_plots ├── data_generation_full_size_one_run.py ├── data_generation_nearest_neighbor_preservation_per_theta_value_MNIST.py ├── data_generation_samples_per_data_set.py ├── data_generation_timings_per_theta_value.py ├── plot_asymptotic_order_box_plot_per_exact_or_accelerated.py ├── plot_nearest_neighbor_perservation_per_theta_value_MNIST.py ├── plot_nearest_neighbor_preservation_per_exact_or_accelerated.py ├── plot_time_per_embedding_run_vs_theta_values.py ├── plot_time_per_iteration_vs_data_set_size_per_exact_or_accelerated_tsne.py ├── plot_time_per_iteration_vs_data_set_size_per_splitting_technique.py ├── plot_tree_teaser.py ├── table_average_iteration_vs_data_set_size_per_exact_or_accelerated_tsne.py ├── table_one_nearest_neighbor_error.py ├── table_relative_cost_function_error.py └── table_relative_gradient_error.py ├── hyperbolicTSNE ├── __init__.py ├── cost_functions_.py ├── data_loaders.py ├── hd_mat_.py ├── hyperbolic_barnes_hut │ ├── tsne.pyx │ └── tsne_utils.pyx ├── hyperbolic_tsne_.py ├── initializations_.py ├── optimizer_.py ├── quality_evaluation_.py ├── solver_.py ├── util.py └── visualization.py ├── requirements.txt ├── setup.py ├── teaser.png └── teaser_files ├── c_elegans_embedding.npy └── c_elegans_labels.npy /.gitignore: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/msmathcomp/hyperbolic-tsne/HEAD/.gitignore -------------------------------------------------------------------------------- /Dockerfile: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/msmathcomp/hyperbolic-tsne/HEAD/Dockerfile -------------------------------------------------------------------------------- /LICENSE: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/msmathcomp/hyperbolic-tsne/HEAD/LICENSE -------------------------------------------------------------------------------- /README.md: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/msmathcomp/hyperbolic-tsne/HEAD/README.md -------------------------------------------------------------------------------- /example_basic_usage.ipynb: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/msmathcomp/hyperbolic-tsne/HEAD/example_basic_usage.ipynb -------------------------------------------------------------------------------- /experiments_and_plots/data_generation_full_size_one_run.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/msmathcomp/hyperbolic-tsne/HEAD/experiments_and_plots/data_generation_full_size_one_run.py -------------------------------------------------------------------------------- /experiments_and_plots/data_generation_nearest_neighbor_preservation_per_theta_value_MNIST.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/msmathcomp/hyperbolic-tsne/HEAD/experiments_and_plots/data_generation_nearest_neighbor_preservation_per_theta_value_MNIST.py -------------------------------------------------------------------------------- /experiments_and_plots/data_generation_samples_per_data_set.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/msmathcomp/hyperbolic-tsne/HEAD/experiments_and_plots/data_generation_samples_per_data_set.py -------------------------------------------------------------------------------- /experiments_and_plots/data_generation_timings_per_theta_value.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/msmathcomp/hyperbolic-tsne/HEAD/experiments_and_plots/data_generation_timings_per_theta_value.py -------------------------------------------------------------------------------- /experiments_and_plots/plot_asymptotic_order_box_plot_per_exact_or_accelerated.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/msmathcomp/hyperbolic-tsne/HEAD/experiments_and_plots/plot_asymptotic_order_box_plot_per_exact_or_accelerated.py -------------------------------------------------------------------------------- /experiments_and_plots/plot_nearest_neighbor_perservation_per_theta_value_MNIST.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/msmathcomp/hyperbolic-tsne/HEAD/experiments_and_plots/plot_nearest_neighbor_perservation_per_theta_value_MNIST.py -------------------------------------------------------------------------------- /experiments_and_plots/plot_nearest_neighbor_preservation_per_exact_or_accelerated.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/msmathcomp/hyperbolic-tsne/HEAD/experiments_and_plots/plot_nearest_neighbor_preservation_per_exact_or_accelerated.py -------------------------------------------------------------------------------- /experiments_and_plots/plot_time_per_embedding_run_vs_theta_values.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/msmathcomp/hyperbolic-tsne/HEAD/experiments_and_plots/plot_time_per_embedding_run_vs_theta_values.py -------------------------------------------------------------------------------- /experiments_and_plots/plot_time_per_iteration_vs_data_set_size_per_exact_or_accelerated_tsne.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/msmathcomp/hyperbolic-tsne/HEAD/experiments_and_plots/plot_time_per_iteration_vs_data_set_size_per_exact_or_accelerated_tsne.py -------------------------------------------------------------------------------- /experiments_and_plots/plot_time_per_iteration_vs_data_set_size_per_splitting_technique.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/msmathcomp/hyperbolic-tsne/HEAD/experiments_and_plots/plot_time_per_iteration_vs_data_set_size_per_splitting_technique.py -------------------------------------------------------------------------------- /experiments_and_plots/plot_tree_teaser.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/msmathcomp/hyperbolic-tsne/HEAD/experiments_and_plots/plot_tree_teaser.py -------------------------------------------------------------------------------- /experiments_and_plots/table_average_iteration_vs_data_set_size_per_exact_or_accelerated_tsne.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/msmathcomp/hyperbolic-tsne/HEAD/experiments_and_plots/table_average_iteration_vs_data_set_size_per_exact_or_accelerated_tsne.py -------------------------------------------------------------------------------- /experiments_and_plots/table_one_nearest_neighbor_error.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/msmathcomp/hyperbolic-tsne/HEAD/experiments_and_plots/table_one_nearest_neighbor_error.py -------------------------------------------------------------------------------- /experiments_and_plots/table_relative_cost_function_error.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/msmathcomp/hyperbolic-tsne/HEAD/experiments_and_plots/table_relative_cost_function_error.py -------------------------------------------------------------------------------- /experiments_and_plots/table_relative_gradient_error.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/msmathcomp/hyperbolic-tsne/HEAD/experiments_and_plots/table_relative_gradient_error.py -------------------------------------------------------------------------------- /hyperbolicTSNE/__init__.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/msmathcomp/hyperbolic-tsne/HEAD/hyperbolicTSNE/__init__.py -------------------------------------------------------------------------------- /hyperbolicTSNE/cost_functions_.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/msmathcomp/hyperbolic-tsne/HEAD/hyperbolicTSNE/cost_functions_.py -------------------------------------------------------------------------------- /hyperbolicTSNE/data_loaders.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/msmathcomp/hyperbolic-tsne/HEAD/hyperbolicTSNE/data_loaders.py -------------------------------------------------------------------------------- /hyperbolicTSNE/hd_mat_.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/msmathcomp/hyperbolic-tsne/HEAD/hyperbolicTSNE/hd_mat_.py -------------------------------------------------------------------------------- /hyperbolicTSNE/hyperbolic_barnes_hut/tsne.pyx: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/msmathcomp/hyperbolic-tsne/HEAD/hyperbolicTSNE/hyperbolic_barnes_hut/tsne.pyx -------------------------------------------------------------------------------- /hyperbolicTSNE/hyperbolic_barnes_hut/tsne_utils.pyx: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/msmathcomp/hyperbolic-tsne/HEAD/hyperbolicTSNE/hyperbolic_barnes_hut/tsne_utils.pyx -------------------------------------------------------------------------------- /hyperbolicTSNE/hyperbolic_tsne_.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/msmathcomp/hyperbolic-tsne/HEAD/hyperbolicTSNE/hyperbolic_tsne_.py -------------------------------------------------------------------------------- /hyperbolicTSNE/initializations_.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/msmathcomp/hyperbolic-tsne/HEAD/hyperbolicTSNE/initializations_.py -------------------------------------------------------------------------------- /hyperbolicTSNE/optimizer_.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/msmathcomp/hyperbolic-tsne/HEAD/hyperbolicTSNE/optimizer_.py -------------------------------------------------------------------------------- /hyperbolicTSNE/quality_evaluation_.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/msmathcomp/hyperbolic-tsne/HEAD/hyperbolicTSNE/quality_evaluation_.py -------------------------------------------------------------------------------- /hyperbolicTSNE/solver_.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/msmathcomp/hyperbolic-tsne/HEAD/hyperbolicTSNE/solver_.py -------------------------------------------------------------------------------- /hyperbolicTSNE/util.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/msmathcomp/hyperbolic-tsne/HEAD/hyperbolicTSNE/util.py -------------------------------------------------------------------------------- /hyperbolicTSNE/visualization.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/msmathcomp/hyperbolic-tsne/HEAD/hyperbolicTSNE/visualization.py -------------------------------------------------------------------------------- /requirements.txt: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/msmathcomp/hyperbolic-tsne/HEAD/requirements.txt -------------------------------------------------------------------------------- /setup.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/msmathcomp/hyperbolic-tsne/HEAD/setup.py -------------------------------------------------------------------------------- /teaser.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/msmathcomp/hyperbolic-tsne/HEAD/teaser.png -------------------------------------------------------------------------------- /teaser_files/c_elegans_embedding.npy: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/msmathcomp/hyperbolic-tsne/HEAD/teaser_files/c_elegans_embedding.npy -------------------------------------------------------------------------------- /teaser_files/c_elegans_labels.npy: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/msmathcomp/hyperbolic-tsne/HEAD/teaser_files/c_elegans_labels.npy --------------------------------------------------------------------------------