├── .gitignore ├── COPYING ├── GNU_Linux.txt ├── Makefile ├── Makefile.base ├── Makefile.defs ├── PROJECTS ├── README.md ├── TODO ├── VERSION ├── applications ├── advdif │ ├── .gitignore │ ├── Makefile │ ├── absolay.cpp │ ├── absolay.h │ ├── advabso.cpp │ ├── advabso.h │ ├── advabsow.cpp │ ├── advabsow.h │ ├── advdfgth.cpp │ ├── advdfgth.h │ ├── advdif-bdf.cpp │ ├── advdif.cpp │ ├── advdif_bubbly.cpp │ ├── advdif_dual_time.cpp │ ├── advdif_fsi.cpp │ ├── advdife-ale.cpp │ ├── advdife-bdf.cpp │ ├── advdife-bubbly.cpp │ ├── advdife-gcl.cpp │ ├── advdife.cpp │ ├── advdife_dual_time.cpp │ ├── advdifeo.cpp │ ├── advdifglb.cpp │ ├── advec.cpp │ ├── advec.h │ ├── advective.h │ ├── advhookf.cpp │ ├── advpenal.cpp │ ├── advpenal.h │ ├── aquifer.cpp │ ├── aquifer.h │ ├── bccadvfm2.cpp │ ├── bccadvfm2_old.cpp │ ├── bccbubbly.cpp │ ├── blessf.cpp │ ├── bubbly.cpp │ ├── bubbly.h │ ├── bubbly_asm.cpp │ ├── bubbly_asm.h │ ├── bubbly_asm_mix.cpp │ ├── bubbly_asm_mix.h │ ├── bubbly_full.cpp │ ├── bubbly_full.h │ ├── burgers.h │ ├── compdate.cpp │ ├── ctff.cpp │ ├── diff.cpp │ ├── diff.h │ ├── enthalpy.cpp │ ├── enthalpy.h │ ├── ffadvec.cpp │ ├── ffadvfm2.cpp │ ├── ffadvfm2_old.cpp │ ├── ffburg.cpp │ ├── ffburg_old.cpp │ ├── ffswfm1t.cpp │ ├── ffswfm2t.cpp │ ├── fm2funm.cpp │ ├── fm2funm.h │ ├── gaschem.cpp │ ├── gaschem.h │ ├── gasflow.cpp │ ├── gasflow.h │ ├── gasflow_preco.cpp │ ├── gasflow_preco.h │ ├── gasflwgth.cpp │ ├── gasflwgth.h │ ├── genload.cpp │ ├── genload.h │ ├── gftwall.h │ ├── id.cpp │ ├── id.h │ ├── lagmul.cpp │ ├── lagmul.h │ ├── linhff.cpp │ ├── main.cpp │ ├── nonlres.cpp │ ├── nonlres.h │ ├── nwadvdif.h │ ├── nwadvdifj.h │ ├── smoke.cpp │ ├── smoke.h │ ├── strat_sw2d.cpp │ ├── strat_sw2d.h │ ├── stream.cpp │ ├── stream.h │ ├── streamsw1d.cpp │ ├── streamsw1d.h │ ├── streamsw2d.cpp │ ├── streamsw2d.h │ ├── streamsw2dt.cpp │ ├── streamsw2dt.h │ ├── svenant1d.cpp │ ├── svenant1d.h │ ├── volabso.cpp │ ├── volabso.h │ └── wallswt.cpp ├── advective │ ├── Makefile │ ├── absorb.cpp │ ├── adv.cpp │ ├── advecfm2.cpp │ ├── advective.cpp │ ├── advective.h │ ├── advective.nm.cpp │ ├── bccadvfm2.cpp │ ├── bcconv_adv.cpp │ ├── compdate.cpp │ ├── ffadap.cpp │ ├── ffadapfm2.cpp │ ├── ffadvec.cpp │ ├── ffeuler.cpp │ ├── ffeulerfm2.cpp │ ├── ffshallw.cpp │ ├── ffshallwl.cpp │ ├── ffswfm2.cpp │ ├── ffswfm2.cpp.new │ ├── ffswfm2t.cpp │ └── main.cpp ├── laplace │ ├── Makefile │ ├── compdate.cpp │ ├── genload.cpp │ ├── genload.h │ ├── lapla.cpp │ ├── lapla.h │ ├── laplace.cpp │ └── main.cpp └── ns │ ├── .gitignore │ ├── Makefile │ ├── adappg.cpp │ ├── adaptor.cpp │ ├── adaptor.h │ ├── bccfstep.cpp │ ├── bccns_gasflow.cpp │ ├── bccnsasmfm2.cpp │ ├── bccnsfm2.cpp │ ├── bccnsitetasm.cpp │ ├── bccnsitetasm_avgvol.cpp │ ├── bccnstherfm2.cpp │ ├── blessf.cpp │ ├── bubblyqint.cpp │ ├── bubblyqint.h │ ├── charge_cons.cpp │ ├── charge_cons.h │ ├── compdate.cpp │ ├── condwall-new.cpp │ ├── condwall.cpp │ ├── condwall.h │ ├── condwallpen.cpp │ ├── condwallpen.h │ ├── ctff.m │ ├── elast.cpp │ ├── elast.h │ ├── elast2.cpp │ ├── elast2.h │ ├── elastld.cpp │ ├── elastld.h │ ├── elastld_uf.cpp │ ├── elastld_uf.h │ ├── electrophoresis.cpp │ ├── electrophoresis.h │ ├── electrophoresisM.cpp │ ├── electrophoresisM.h │ ├── electrophoresisM2.cpp │ ├── electrophoresisM2.h │ ├── electrophoresis_mov.cpp │ ├── electrophoresis_mov.h │ ├── embgath.cpp │ ├── embgath.h │ ├── errestim.cpp │ ├── errestim.h │ ├── flowrev.cpp │ ├── flowrev.h │ ├── fm2funm.cpp │ ├── fm2funm.h │ ├── fracstep.cpp │ ├── fracstep.h │ ├── fstepfm2.cpp │ ├── fstepfm2cw.cpp │ ├── fstepfm2ther.cpp │ ├── genload.cpp │ ├── genload.h │ ├── interplns.h │ ├── invcoupl.cpp │ ├── invcoupl.h │ ├── lagmul.cpp │ ├── lagmul.h │ ├── main.cpp │ ├── mmove.cpp │ ├── mmove.h │ ├── mmove2.cpp │ ├── mmove2.h │ ├── mmoveopt.cpp │ ├── mmoveopt.h │ ├── mmoveopt2.cpp │ ├── mmoveopt2.h │ ├── mmoveopt3.cpp │ ├── mmoveopt3.h │ ├── mmv2main.cpp │ ├── mmvmain.cpp │ ├── nodeload.cpp │ ├── nodeload.h │ ├── nonlr.cpp │ ├── ns.cpp │ ├── ns_fsi.cpp │ ├── ns_gasflow.cpp │ ├── nsgath.cpp │ ├── nsgath.h │ ├── nsglb.cpp │ ├── nshookf.cpp │ ├── nsi_tet.h │ ├── nsid.cpp │ ├── nsid.h │ ├── nsifunaux.h │ ├── nsikeps.cpp │ ├── nsikepsrot.cpp │ ├── nsikepsrot.h │ ├── nsilesasm_2.cpp │ ├── nsilesther.cpp │ ├── nsirot.cpp │ ├── nsitetasm.cpp │ ├── nsitetasm_avgvol.cpp │ ├── nsitetlesc.cpp │ ├── nsitetlesf.cpp │ ├── nsitetlesf.h │ ├── nsitetlesfbf.cpp │ ├── nsitetlesfbf.h │ ├── nsitetlesfd.cpp │ ├── nsitetlesfd.h │ ├── nsitetlesfm2.cpp │ ├── nsitetlesls.cpp │ ├── nsitetlesls.h │ ├── nsitlfctx2.cpp │ ├── nslagmul.cpp │ ├── nslagmul.h │ ├── nspenal.cpp │ ├── nspenal.h │ ├── nsres.cpp │ ├── nsroblgml.cpp │ ├── nsstruct.cpp │ ├── nssup.cpp │ ├── nssup.h │ ├── nssupg.cpp │ ├── nssupr.cpp │ ├── nsvol.cpp │ ├── nullvort.cpp │ ├── nullvort.h │ ├── poiboltz.cpp │ ├── poiboltz.h │ ├── poisson.cpp │ ├── poisson.h │ ├── pot_grad.cpp │ ├── pot_grad.h │ ├── qharm.cpp │ ├── qharm.h │ ├── qharmm.cpp │ ├── qharmm.h │ ├── renorm.cpp │ ├── renorm.h │ ├── renorm2.cpp │ ├── renorm2.h │ ├── renorm3.cpp │ ├── renorm3.h │ ├── truss.cpp │ ├── truss.h │ ├── try1.m │ ├── try2.m │ ├── wall.cpp │ ├── walldata.cpp │ ├── wallf.m │ ├── wallf1.m │ └── wallke.cpp ├── doc ├── .gitignore ├── Makefile ├── OBJ │ ├── .gitignore │ ├── EPSI │ │ ├── alpha.epsi │ │ ├── bphi.epsi │ │ ├── eta.epsi │ │ ├── hb.epsi │ │ ├── nor.epsi │ │ ├── oscplate.fig │ │ ├── phi.epsi │ │ ├── phi0.epsi │ │ ├── phi1.epsi │ │ ├── t0.epsi │ │ ├── t1.epsi │ │ ├── tau.epsi │ │ ├── tau2.epsi │ │ ├── tinf.eps │ │ ├── ts.eps │ │ ├── ts.epsi │ │ └── uosc.epsi │ ├── Makefile │ ├── abso.fig │ ├── abso2.fig │ ├── aquifer.fig │ ├── aquist.fig │ ├── branch.fig │ ├── branchnotok │ ├── branchnotok.fig │ ├── cache.fig │ ├── dataflow.obj │ ├── embgath.svg │ ├── embgath2.svg │ ├── genloaddl.fig │ ├── genloadsl.fig │ ├── genlother.fig │ ├── hexagen.fig │ ├── idmap.obj │ ├── iisd.fig │ ├── iisd2.fig │ ├── iisd3.fig │ ├── mesh.obj │ ├── meshgraph.fig │ ├── meshgraph2.fig │ ├── nonsym.obj │ ├── nsprof.fig │ ├── oscplate.fig │ ├── oscplsol.fig │ ├── petscfem.obj │ ├── pfmat.fig │ ├── prismgen.fig │ ├── profil.obj │ ├── quadgen.fig │ ├── ramp.obj │ ├── sched.fig │ ├── sched2.fig │ ├── sine.fig │ ├── slip.obj │ ├── smramp.obj │ ├── stream.fig │ ├── symme.obj │ ├── tempbc.obj │ ├── tetragen.fig │ ├── tetratree.fig │ └── trigen.fig ├── README.1 ├── README.pod ├── README.podin ├── Running-Tests-HOWTO.txt ├── Version-Policy-HOWTO.txt ├── addstuff.tex ├── adv.tex ├── advabso.tex ├── advabsow.tex ├── advdif.tex ├── advdif2.tex ├── advdifop.tex ├── advec.tex ├── allopt.tex ├── banner ├── braces.tex ├── compprof.tex ├── dx.tex ├── fastmat2.tex ├── femref.tex ├── fixul.pl ├── fm2ex.cpp ├── gather.tex ├── genload.tex ├── gpl.tex ├── hellowh.cpp ├── hook.tex ├── icons.tgz.uue ├── idmap.tex ├── index.tex ├── latex2html.init ├── layout.tex ├── make-info.el ├── manual │ ├── .gitignore │ ├── Makefile │ ├── doc.dxx │ └── vrfdocpp.pl ├── ns.tex ├── nsdoc.tex ├── odoc.el ├── odocabso.tex ├── odocabsow.tex ├── odocadv.tex ├── odocadvdif.tex ├── odocadvdif2.tex ├── odocadvdife.tex ├── odocadve.tex ├── odocadvfe.tex ├── odocadvfm2.tex ├── odocadvfs.tex ├── odocall.tex ├── odocburgers.tex ├── odocdiff.tex ├── odocdxhook.tex ├── odocelems.tex ├── odocflrv.tex ├── odocgenl.tex ├── odociisd.tex ├── odociisdm.tex ├── odocns.tex ├── odocnsb.tex ├── odocnse.tex ├── odocnsfs.tex ├── odocnsw.tex ├── odocrmsh.tex ├── odocstream.tex ├── odocswfm2t.tex ├── options.texi ├── petscfem.bib ├── petscfem.in.tex ├── petscfem2.cpp ├── pfmat.tex ├── prev1.tex ├── projlist.tex ├── syncbuff.tex ├── tests.tex ├── thash.tex ├── trygetopt.tex └── versions-tree.fig ├── dx ├── .gitignore ├── Makefile ├── dxdumm.cpp ├── epi2.cfg ├── epi2.net ├── epimport.cpp ├── epimport.mb ├── epimport.mdf ├── nsi2d.cfg ├── nsi2d.net ├── nsi2d2.cfg ├── nsi2d2.net ├── nsi3d.cfg ├── nsi3d.net ├── prog.cfg ├── prog.net ├── qq.cfg ├── qq.net ├── qq2.cfg ├── qq2.net ├── systemdi.net └── userepimport.c ├── examples └── sqcav │ ├── Makefile │ ├── machi.dat │ ├── mksqcav.m │ ├── nsi3d.cfg │ ├── nsi3d.net │ ├── sqcav.depl │ └── viewer.dx ├── make ├── appatch ├── exclude ├── mkpatch └── mkvers ├── notes.txt ├── save.log ├── src ├── .gitignore ├── Makefile ├── Makefile.bison ├── ampli.h ├── amplidl.cpp ├── arglist.cpp ├── arglist.h ├── arglistn.cpp ├── arglistn.h ├── assprof.cpp ├── autoptr.h ├── autostr.cpp ├── autostr.h ├── blessf.cpp ├── buffpack.h ├── cloud.cpp ├── cloud.h ├── cloud2.cpp ├── cloud2.h ├── debug.cpp ├── debug.h ├── dgefa.f ├── distcont.h ├── distcont2.h ├── distmap.h ├── distmap2.h ├── distmat.cpp ├── distmat.h ├── dlhook.cpp ├── dlhook.h ├── dofmap.cpp ├── dofmap.h ├── dofmap2.cpp ├── dofmap3.cpp ├── dvecpar.cpp ├── dvecpar.h ├── dvecpar2.h ├── dvector.cpp ├── dvector.h ├── dvector2.h ├── dxelmst.cpp ├── dxhook.cpp ├── dxhook.h ├── elemlist.cpp ├── elemset.cpp ├── elemset.h ├── elmsupl.cpp ├── elmsupl2.cpp ├── fastlib.h ├── fastlib2.h ├── fastmat.cpp ├── fastmat.h ├── fastmat2.cpp ├── fastmat2.h ├── fastmat2b.cpp ├── fastmat2c.cpp ├── fastmat2d.cpp ├── fem.cpp ├── fem.h ├── fm2ctx2.cpp ├── fm2eperl.cpp ├── fm2eperl2.cpp ├── fm2prod.h ├── fm2prod2.cpp ├── fm2stats.h ├── fm2temp.cpp ├── fm2temp.h ├── fmat2.pl ├── fmat2ep.cpp ├── fmat2ep2.cpp ├── fmgemmcode.cpp ├── fmgemmcode.h ├── fmgemmdefs.h ├── fmgemmload.h ├── fstack.cpp ├── fstack.h ├── gatherer.cpp ├── gatherer.h ├── generror.cpp ├── generror.h ├── getarray.cpp ├── getarray.h ├── getarrgr.tab.c ├── getarrgr.tab.h ├── getarrgr.y ├── getprop.cpp ├── getprop.h ├── gpdata.cpp ├── gpdata.h ├── graph.cpp ├── graph.h ├── graphdv.cpp ├── graphdv.h ├── hook.cpp ├── hook.h ├── idmap.cpp ├── idmap.h ├── iisdcr.cpp ├── iisdgraph.cpp ├── iisdgraph.h ├── iisdmat.cpp ├── iisdmat.h ├── iisdmat2.cpp ├── iisdmatstat.h ├── insdeb.pl ├── interpola.cpp ├── interpola.h ├── lagmul.cpp ├── lagmul.h ├── libretto.h ├── linkgraph.cpp ├── linkgraph.h ├── lusolver.h ├── machine.h ├── macros.el ├── mainutl.cpp ├── matFSM.cpp ├── matFSM.h ├── matchg.cpp ├── maximizr.h ├── measperf.cpp ├── metisprt.cpp ├── mkfmgemm.pl ├── mkl_gf.c ├── mprod.h ├── mprod.pl ├── mprod1.h ├── mproddef.h ├── mprodtmpl.h ├── mshpart.h ├── part.h ├── penalize.cpp ├── penalize.h ├── petscmat.cpp ├── petscmat.h ├── pfgtpmacr.h ├── pfmat.cpp ├── pfmat.h ├── pfmat.sm ├── pfmat.sm.in ├── pfmatFSM.cpp ├── pfmatFSM.h ├── pfobject.cpp ├── pfobject.h ├── pfptscmat.h ├── prep.pl ├── propef.cpp ├── randomg.cpp ├── randomg.h ├── readlist.eperl ├── readlist.h ├── readmesh.cpp ├── readmesh.h ├── rhhook.cpp ├── rhhook.h ├── secant.cpp ├── secant.h ├── seval.f ├── shllhook.cpp ├── shllhook.h ├── sockbuff.h ├── sparse.cpp ├── sparse.h ├── sparse.sm ├── sparse2.h ├── spdirect.cpp ├── spdirect.h ├── spetscmat.cpp ├── spetscmat.h ├── spline.f ├── spsolve.cpp ├── srfgath.cpp ├── srfgath.h ├── sslwrp.h ├── stat.h ├── state.cpp ├── sttfilter.cpp ├── sttfilter.h ├── surf2vol.cpp ├── surf2vol.h ├── surf2vol2.h ├── syncbuff.cpp ├── syncbuff.h ├── syncbuff2.h ├── tempfun.cpp ├── tempfun2.cpp ├── texthash.cpp ├── texthash.h ├── texthf.cpp ├── texthf.h ├── timestat.cpp ├── timestat.h ├── util2.cpp ├── util2.h ├── util3.cpp ├── util3.h ├── utils.cpp ├── utils.h ├── vecmacros.h └── version.cppin ├── stable.log ├── test ├── .gitignore ├── Makefile ├── Makefile.base.test ├── advdif │ ├── .gitignore │ ├── Makefile │ ├── advec.epl │ ├── burgers.epl │ ├── burgers.ini │ ├── plano.con │ ├── plano.epl │ ├── plano.m │ ├── plano.nod │ ├── sine.data.epl │ ├── sine.epl │ ├── sine.m │ ├── sine_crank_nic.m │ ├── sine_fine_test.m │ ├── sineload.m │ ├── solana.m │ ├── tryme.pl │ └── tryme2.pl ├── advdif_lin │ ├── appalgebra.c │ ├── appctx.h │ ├── appelement.c │ ├── appload.c │ ├── appview.c │ ├── bscript.m │ ├── chrono.h │ ├── finput.c │ ├── main.c │ ├── makefile │ └── petscrc ├── advec │ ├── .gitignore │ ├── Makefile │ ├── advec.epl │ ├── advec.m │ ├── bellpar.m │ ├── bellpar2.m │ ├── proc.m │ ├── proc2.m │ ├── proc3.m │ ├── prog.cfg │ ├── prog.net │ ├── refin.m │ ├── smoke.cfg │ ├── smoke.m │ ├── smoke.net │ ├── smsmooth.m │ ├── verif_parallel_cone.m │ ├── verif_parallel_cone_noise.m │ ├── verif_rotating_cone.m │ ├── verif_rotating_cone_noise.m │ ├── verif_skew.m │ ├── verif_skew_cone.m │ ├── verif_skew_cone_noise.m │ ├── verif_skew_noise.m │ └── viewer.dx ├── alebcconv │ ├── .gitignore │ ├── Makefile │ ├── checkinv.m │ ├── data.pl │ ├── gfabso.epl │ ├── mkgfabso.m │ ├── mvbody.cpp │ ├── notes.txt │ └── proc.m ├── alehook │ ├── Makefile │ ├── data.pl │ ├── mksqcav.m │ └── sqcav.epl ├── aquifer │ ├── .gitignore │ ├── Makefile │ ├── aqui.epl │ ├── aquist.epl │ ├── check.m │ ├── check_var_rain.m │ ├── checkas.m │ ├── checkc.m │ ├── checkdlf.m │ ├── checks.m │ ├── checku.m │ ├── chezy_rect.state.ref │ ├── fun.cpp │ ├── fun2.cpp │ ├── fun3.cpp │ ├── mann_circ.state.ref │ ├── mkmesh.m │ ├── mkmeshaqs.m │ ├── mkmeshs.m │ ├── rain.cpp │ ├── rain2.cpp │ ├── stream.dl_fun1.ref │ ├── stream.dl_fun2.ref │ ├── stream.dl_fun3.ref │ ├── stream.epl │ ├── stream.stream_chezy.ans │ ├── stream2.epl │ ├── stream2.ini │ ├── stream2.output.ans │ └── u_stream.ref ├── bcconvtest │ ├── Makefile │ ├── bcconv_test_3d.epl │ ├── extrude.m │ ├── mkmesh.m │ ├── proc.m │ ├── q2t.m │ ├── quad2tri_mesh.m │ └── tempo.txt ├── bubbly │ ├── Makefile │ ├── bubbly.epl │ ├── couette.epl │ ├── mkcouette.m │ ├── mkmesh.m │ ├── mkpoise2fases.m │ ├── poise2fases.epl │ ├── proc.m │ ├── proc1.m │ ├── proc2.m │ └── zhomo2.m ├── bug100 │ ├── .gitignore │ ├── Makefile │ ├── newff.epl │ └── newff.nod ├── burgers │ ├── .gitignore │ ├── Makefile │ ├── burgers.epl │ ├── burgers.fd_jac_1.ans │ ├── burgers.fd_jac_2.ans │ ├── burgers.fd_jac_3.ans │ ├── jacotest │ │ ├── .gitignore │ │ ├── Makefile │ │ ├── burgers.epl │ │ ├── data.pl │ │ ├── mkmesh.m │ │ ├── verif_1elem.m │ │ └── verif_test_jaco_conv.m │ ├── mmesh.m │ ├── verif.m │ └── verif_fd_jac_1.m ├── circ │ ├── .gitignore │ ├── Makefile │ ├── check_circ.m │ ├── circ.abso │ ├── circ.con │ ├── circ.dat │ ├── circ.fixa │ ├── circ.ini │ ├── circ.nod │ └── circ.slip ├── condwall │ ├── .gitignore │ ├── Makefile │ ├── condwall.epl │ ├── condwall.pl │ ├── fixstate.m │ ├── mkcondwall.m │ ├── mkmpeg.sh │ ├── mkmpeg2.sh │ ├── movwall.cpp │ ├── nsi2d2.cfg │ ├── nsi2d2.net │ ├── proc.m │ └── proc2.m ├── cubcav │ ├── .gitignore │ ├── Makefile │ ├── Makefile.sub-dir │ ├── anal.pl │ ├── check_plain.m │ ├── check_srfgath.m │ ├── comp_step.m │ ├── comp_step2.m │ ├── comp_step_server.m │ ├── cpstat.m │ ├── cpustat.pl │ ├── cubcav-fs.epl │ ├── cubcav-i386.ans │ ├── cubcav-x86_64.ans │ ├── cubcav.epl │ ├── cubcav.pl │ ├── cubcav.plain-bupl.ans │ ├── cubcav_verif.m │ ├── cube.dx │ ├── endur.sh │ ├── fsanal.pl │ ├── gmv2.pl │ ├── indxx.m │ ├── indxy.m │ ├── indxz.m │ ├── isp.stat │ ├── isp2.stat │ ├── isp30.stat │ ├── isp30c.stat │ ├── job.pl │ ├── lu.stat │ ├── mkjpg │ ├── mkmesh.m │ ├── mkmpeg.sh │ ├── mkmpeg2.sh │ ├── monitor.sh │ ├── mwtimage.net │ ├── mwtimage2.net │ ├── notes.txt │ ├── nsi3d.cfg │ ├── nsi3d.net │ ├── parti.cfg │ ├── parti.m │ ├── parti.net │ ├── parti.pl │ ├── petsc-np1.stat │ ├── pf_smooth.m │ ├── plyx.m │ ├── proc.m │ ├── proc.pl │ ├── proc1.m │ ├── proc2.m │ ├── proc3.m │ ├── proc4.m │ ├── proctable │ ├── proctable.geronimo │ ├── proctable.itc │ ├── proctable.mono │ ├── prog.cfg │ ├── prog.net │ ├── program.cfg │ ├── program.net │ ├── run_subdir.pl │ ├── sendstep.pl │ ├── stat.dat │ ├── trivini.m │ ├── tryinterp.m │ └── viewer.dx ├── distmap │ ├── Makefile │ ├── dist_graph.np1.ans.txt │ ├── dist_graph.np2.ans.txt │ ├── dist_graph.np3.ans.txt │ ├── distcont.ans.txt │ ├── distcont.cpp │ ├── distmap.cpp │ ├── distmat.cpp │ ├── test_kob_no_key_print.ans │ ├── test_kob_no_newline.ans │ ├── test_kob_no_sort.ans │ ├── test_kob_plain.ans │ ├── test_sync_buffer.ans │ ├── testsb.cpp │ ├── tryme.cpp │ ├── tryme2.cpp │ ├── tryme3.cpp │ ├── tryme4.cpp │ ├── tryme5.cpp │ ├── tryme6.cpp │ └── tryme7.cpp ├── ductadv │ ├── .gitignore │ ├── Makefile │ ├── README.txt │ ├── checktmean.m │ ├── data.pl │ ├── ductadv.epl │ └── mkcyl2d.m ├── dvector │ ├── Makefile │ └── dvectest.cpp ├── elastld-bubble │ ├── .gitignore │ ├── Makefile │ ├── README.txt │ ├── bubble.epl │ ├── bubble.state.ref │ ├── data.pl │ ├── mkmesh.m │ ├── proc.m │ └── verif.m ├── elastld-df │ ├── .gitignore │ ├── Makefile │ ├── README.txt │ ├── bdry.cpp │ ├── data.pl │ ├── elastld.epl │ ├── elastld.state40.ref │ ├── mkmesh.m │ ├── proc.m │ ├── proc2.m │ ├── verif.m │ └── viz.py ├── embgath │ ├── .gitignore │ ├── Makefile │ ├── case3d │ │ ├── Makefile │ │ ├── README.txt │ │ ├── data.pl │ │ ├── mkmesh.m │ │ ├── strip3d.epl │ │ └── strip3d_verif.m │ ├── data.pl │ ├── friction.step-1.ref │ ├── mkstrip2d.m │ ├── strip2d.epl │ └── verif.m ├── eperlini.pl ├── fastmat2 │ ├── Makefile │ ├── dsyev2.f │ ├── fastmat2.ans.txt │ ├── fastmat2a.ans.txt │ ├── fm2effi.txt │ ├── fm2eig.cpp │ ├── testfm2.cpp │ ├── testfm2a.cpp │ ├── testfm2c.cpp │ ├── testfm2ctx2.cpp │ ├── testmprod.cpp │ └── tfastvec.cpp ├── flow-reversal │ ├── .gitignore │ ├── Makefile │ ├── check.m │ ├── data.pl │ ├── mkmesh.m │ └── strip2d.epl ├── fstack │ ├── .gitignore │ ├── Makefile │ ├── file1.dat │ ├── file1a.dat │ ├── file1b.dat │ ├── file2.dat │ ├── file2a.dat │ ├── file2b.dat │ ├── file3.dat │ ├── file4.dat │ ├── filen1.dat │ ├── filen2.dat │ ├── filen3.dat │ ├── fscheck.pl │ ├── fstack3.ans │ ├── tautostr.cpp │ ├── test_autostr.output.ans │ ├── tfstack.ans │ └── tfstack.cpp ├── gaschem │ ├── Makefile │ ├── mkmesh.m │ ├── pool.epl │ ├── proc.m │ ├── proc2.m │ └── proctable ├── gasflow-conv │ ├── .gitignore │ ├── Makefile │ ├── data.pl │ ├── gfnwttest.epl │ ├── mkmesh.m │ └── test_gasflow_1elem_jaco_verif.m ├── genload │ ├── .gitignore │ ├── Makefile │ ├── genload.epl │ └── genload.nod ├── gfplate │ ├── .gitignore │ ├── Makefile │ ├── adre.epl │ ├── adre.ini │ ├── comp_corner.epl │ ├── compshock.m │ ├── compstate.m │ ├── cylabso.epl │ ├── dabso.pl │ ├── dabso2d.pl │ ├── dabso2dn.pl │ ├── data.pl │ ├── datcyl.pl │ ├── dmovshock.pl │ ├── dnozzle.pl │ ├── dnozzle2.pl │ ├── dperi.pl │ ├── dshock.pl │ ├── dshock3d.pl │ ├── fixstate.m │ ├── gasflow2d.cfg │ ├── gasflow2d.net │ ├── gasflow3d.cfg │ ├── gasflow3d.net │ ├── gbody.cpp │ ├── gfabso.epl │ ├── gfabso2d.epl │ ├── gfabso2dn.epl │ ├── gfmovshock.epl │ ├── gfnozzle.epl │ ├── gfnozzle2.epl │ ├── gfperi.epl │ ├── gfplate.epl │ ├── gfshock.epl │ ├── gfshock3d.epl │ ├── gftuyere.epl │ ├── mkcyl.m │ ├── mkcyl2.m │ ├── mkgfabso.m │ ├── mkgfabso2d.m │ ├── mkgfabso2dn.m │ ├── mkgfmovshock.m │ ├── mkgfperi.m │ ├── mkgfshock.m │ ├── mkgfshock3d.m │ ├── mkmpeg.sh │ ├── mkmpeg2.sh │ ├── mknozzle.m │ ├── mknozzle2.m │ ├── mkplate.m │ ├── normshock.m │ ├── primi2ri.m │ ├── proc.m │ ├── proc2.m │ ├── proc22d.m │ ├── proc3.m │ ├── proc4.m │ ├── proc5.m │ ├── proc6.m │ ├── proc7.m │ ├── proc8.m │ ├── proctable │ ├── tryme.m │ ├── tryme2.m │ ├── tryme3.m │ ├── tryme4.m │ └── viewer.dx ├── godunov │ ├── godunov_mesh.m │ └── godunov_problem_state.epl ├── graph │ ├── Makefile │ ├── answer-i386.txt │ ├── answer-x86_64.txt │ ├── graph.sh │ ├── tryme.cpp │ ├── tryme2.cpp │ └── tryme3.cpp ├── idmap │ ├── .gitignore │ ├── Makefile │ ├── tidmap.ans │ └── tidmap.cpp ├── lap_nn_preco │ ├── appalgebra.c │ ├── appctx.h │ ├── appelement.c │ ├── appload.c │ ├── appview.c │ ├── finput.c │ ├── main.c │ ├── makefile │ └── split_mat.pl ├── les │ ├── Makefile │ ├── les.epl │ ├── les.m │ ├── readdata.pl │ ├── sector.epl │ ├── stabi │ │ ├── Makefile │ │ ├── ini.data │ │ ├── mkmesh.m │ │ ├── stabi.epl │ │ └── stabi.m │ └── stabi3d │ │ ├── .gitignore │ │ ├── Makefile │ │ ├── Makefile.parproc │ │ ├── data.pl │ │ ├── extrude.m │ │ ├── gmv2.pl │ │ ├── ini.data │ │ ├── memtest.cpp │ │ ├── memtest2.cpp │ │ ├── mkmesh.m │ │ ├── notes.txt │ │ ├── proc.m │ │ ├── proc2.m │ │ ├── proc3.m │ │ ├── proc4.m │ │ ├── prog.cfg │ │ ├── prog.net │ │ ├── stabi.epl │ │ ├── stabi.m │ │ └── viewer.dx ├── lupart │ ├── .gitignore │ ├── Makefile │ ├── check_direct_petsc.m │ ├── check_direct_superlu.m │ ├── check_iisd.m │ ├── check_iisd_superlu.m │ ├── check_part.m │ ├── check_peri.ans │ ├── check_peri.m │ ├── check_subpart.m │ ├── checkiisd.orig.m │ ├── loadiisd.m │ ├── loadpetsc.m │ ├── mkmesh.m │ ├── proc.m │ ├── startup.m │ ├── wallke.epl │ └── wallke.some ├── mmove │ ├── .gitignore │ ├── Makefile │ ├── fun.m │ ├── gmv.attr │ ├── gmv2.pl │ ├── mkstep.m │ ├── mkstep3d.m │ ├── mmove.epl │ ├── piecewise.dat │ ├── piecewtanh.m │ ├── proc.m │ ├── proc2.m │ ├── proc3.m │ ├── proc4.m │ ├── proc5.m │ ├── proco.m │ ├── step.bck.epl │ ├── step.epl │ └── step3d.epl ├── newff │ ├── .gitignore │ ├── Makefile │ ├── data.m.epl │ ├── diffujac.m │ ├── newff.epl │ ├── newff.m │ ├── nodl2elem.m │ └── verif.m ├── nonlr │ ├── Makefile │ ├── mkmesh.m │ ├── nonlr.epl │ ├── nonlr.ini │ ├── nonlr.nod │ ├── nonlr.peri │ └── nonlr.some ├── nsgenload │ ├── Makefile │ ├── check.m │ ├── constraint.m │ ├── genload.epl │ ├── genload.nod │ ├── output.fstack_global.ans │ ├── state.constraint.ref │ ├── state.diag.ref │ ├── state.full.ref │ └── state.scalar.ref ├── nutatcyl │ ├── Makefile │ ├── checknutcyl.m │ ├── checkrigid.m │ ├── checkstrip.m │ ├── checkstrip2d.m │ ├── closcyl.epl │ ├── data.pl │ ├── gmvcc.pl │ ├── loop_spin.pl │ ├── mkcloscyl.m │ ├── mkstrip.m │ ├── mkstrip2d.m │ ├── proc_spin.m │ ├── strip.epl │ └── strip2d.epl ├── oscplate │ ├── .gitignore │ ├── Makefile │ ├── data.pl │ ├── oscplate.dat │ ├── oscplate.epl │ ├── oscplate.m │ ├── oscplate1.ans │ ├── oscplate1.state.ref │ ├── oscplate2-ref.octave │ ├── oscplate2.dat │ ├── oscplate2.m │ ├── oscplate2o.ans │ ├── oscplate3.ini │ ├── oscplate3.m │ ├── oscplate4.m │ ├── oscplate4_30deg.m │ ├── oscplate4c.m │ └── verif1.m ├── pfmat │ ├── .gitignore │ ├── Makefile │ ├── checkpf.m │ ├── hashf.cpp │ ├── hashf.h │ ├── mklap.m │ ├── mksymm.m │ ├── pfmat.cpp │ ├── pfmat2.cpp │ ├── pfmat3.cpp │ ├── pfmat4.cpp │ ├── pfmat5.cpp │ ├── pfmat6.cpp │ ├── pfmat7.cpp │ ├── sw_nn_preco.cpp │ └── try.cpp ├── plano │ ├── .gitignore │ ├── Makefile │ ├── plano.abso │ ├── plano.con │ ├── plano.epl │ ├── plano.fixa │ ├── plano.ini │ ├── plano.nod │ ├── plano.period │ └── plano_h.ini ├── plate │ ├── .gitignore │ ├── Makefile │ ├── circular_mapbou.m │ ├── circular_mesh.m │ ├── compo.cpp │ ├── cylin.epl │ ├── cylin.m │ ├── data.pl │ ├── datas.pl │ ├── ext.epl │ ├── fcost.m │ ├── fcostg.m │ ├── fcostmin.m │ ├── fifo.cpp │ ├── fifo.h │ ├── filana.m │ ├── gmv.pl │ ├── gmvp.pl │ ├── gmvs.pl │ ├── inviscid.cpp │ ├── inviscid.h │ ├── looping.m │ ├── mapbou_circle.m │ ├── mapbous.m │ ├── mkplate.m │ ├── mkwave.m │ ├── nsi2d2.cfg │ ├── nsi2d2.net │ ├── nsi2d3.cfg │ ├── nsi2d3.net │ ├── nsid.epl │ ├── parab.m │ ├── parabf.m │ ├── parabolic_mapbou.m │ ├── parabolic_mesh.m │ ├── param │ ├── plate.epl │ ├── proc.m │ ├── proc2.m │ ├── proc3.m │ ├── proc4.m │ ├── proc5.m │ ├── proc6.m │ ├── proc7.m │ ├── prog.cfg │ ├── prog.net │ ├── sfilter.m │ ├── small.epl │ ├── small.ini │ ├── sphere.epl │ ├── sphere.m │ ├── tryme.m │ ├── tryme2.m │ ├── tryme3.m │ ├── tryme4.m │ ├── viewer.dx │ └── wave.epl ├── project │ ├── .gitignore │ ├── Makefile │ ├── mkcheck.m │ ├── mkcheck2.m │ ├── mkdata.m │ └── mkdata2.m ├── runtests.pl ├── scalar2d-bdf │ ├── .gitignore │ ├── Makefile │ ├── bdf_dgcl_verif.m │ ├── data.pl │ ├── gascont.epl │ ├── gascont.state.gaussian_diag.ref │ ├── mkmesh.m │ ├── mmv-force.cpp │ ├── proc.m │ ├── proc2.m │ ├── verif.m │ └── viz.py ├── sector │ ├── .gitignore │ ├── Makefile │ ├── lap_per.dat │ ├── lap_per.tex │ ├── sec_iprop.con │ ├── sector.con │ ├── sector.con.tri │ ├── sector.constr │ ├── sector.epl │ ├── sector.epl.new │ ├── sector.fix │ ├── sector.fix2 │ ├── sector.nod │ ├── sector.peri │ └── sector.tex ├── sparse │ ├── Makefile │ ├── alloc.txt │ ├── check_cloud.m │ ├── file.dat │ ├── graphs.h │ ├── sp.cpp │ ├── sparse.test │ ├── test10.ans │ ├── test10.cpp │ ├── test10_ini.m │ ├── test10_verif.m │ ├── test11.cpp │ ├── tryme.cpp │ ├── tryme2.cpp │ ├── tryme3.cpp │ ├── tryme4.cpp │ ├── tryme5.cpp │ ├── tryme6.cpp │ ├── tryme7.cpp │ ├── tryme8.ans │ ├── tryme8.cpp │ └── tryme9.cpp ├── spillway │ ├── Makefile │ ├── alehook.cpp │ ├── data.pl │ ├── dataw.pl │ ├── filttry.m │ ├── fs_eq.m │ ├── fs_fun.m │ ├── gmv.pl │ ├── mkwave.m │ ├── mkwave2.m │ ├── proc.m │ ├── proc2.m │ ├── proc3.m │ ├── spillway.epl │ ├── spillway.m │ ├── spillway3d.cfg │ ├── spillway3d.net │ ├── spillway_eq.m │ ├── spillway_fun.m │ ├── spillway_mapbou.m │ ├── spillway_mmv.epl │ ├── wave.epl │ └── wave_mmv.epl ├── sqcav │ ├── .gitignore │ ├── Makefile │ ├── case_shell_hook.ans │ ├── case_shell_hook2.ans │ ├── check.fs.ans │ ├── check.g_body.m │ ├── check.read_ini.m │ ├── check_fs.m │ ├── check_g3d.m │ ├── check_iisd.m │ ├── check_iisd2.m │ ├── check_re1000.m │ ├── check_zwproc.m │ ├── check_zwproc2.m │ ├── gbody.ans.txt │ ├── ghia.m │ ├── job.pl │ ├── mkqharm.m │ ├── mksqcav.m │ ├── mksqcav2.m │ ├── nodes.some │ ├── pf_output.dx_allf.ans │ ├── pf_output.dx_file1.ans │ ├── pf_output.dx_file3.ans │ ├── pf_output.dx_synchro.ans │ ├── proc.m │ ├── procfs.m │ ├── qharm.epl │ ├── qq1.net │ ├── qq3.net │ ├── qq_synchro.net │ ├── simple.ans │ ├── simple.epl │ ├── sqcav.ans.np2.txt │ ├── sqcav.ans.txt │ ├── sqcav.epl │ ├── sqcav.fractional_step_re1000.ref │ ├── sqcav.fractional_step_re1000_reuse1.ref │ ├── sqcav.fractional_step_re400.ref │ ├── sqcav.pl │ ├── sqcav2.epl │ ├── sqcav2.pl │ ├── test_meas_perf.ans.txt │ ├── u_re1000.dat │ ├── verif.g3d.ans │ ├── verif.read_ini.ans │ └── viewer.dx ├── strat-sw2d │ ├── Makefile │ ├── anim.m │ ├── data_plano.pl │ ├── mkplano.m │ ├── notes.txt │ └── plano.epl ├── sw │ ├── Makefile │ ├── centerflux.epl │ ├── centerflux.m │ └── statespace.m ├── sw1d-ulsar │ ├── Makefile │ ├── anim.m │ ├── anim2.m │ ├── anim3.m │ ├── area.m │ ├── canal1d.epl │ ├── canal1d.m │ ├── canal1driem.epl │ ├── canal1driem.m │ ├── data_canal1d.pl │ ├── mkasf.sh │ ├── mkmpeg2.sh │ └── script.sh ├── sw2d-abso │ ├── Makefile │ ├── anim.m │ ├── data_plano.pl │ ├── mkplano.m │ └── plano.epl ├── sw2d │ ├── Makefile │ ├── anim.m │ ├── data_plano.pl │ ├── mkasf.sh │ ├── mkmpeg2.sh │ ├── mkplano.m │ ├── plano.epl │ ├── post.m │ ├── prepa.pl │ ├── script.sh │ ├── sw2d-ke.cfg │ └── sw2d-ke.net ├── sw_abso │ ├── .gitignore │ ├── Makefile │ ├── canal1d.data │ ├── canal1d.epl │ ├── canal1d.m │ ├── check_test_abso.m │ ├── chiquito.epl │ ├── chiquito.m │ ├── corner.epl │ ├── corner.m │ ├── flux.m │ ├── igrec.epl │ ├── igrec.m │ ├── plotres.m │ ├── spiral.epl │ ├── spiral.m │ ├── state_h_step10.dat │ ├── test_abso.verif.ans │ ├── tryme.m │ └── tryme2.m ├── texthash │ ├── .gitignore │ ├── Makefile │ ├── thash2.ans │ ├── thash2.cpp │ ├── thash2.txt │ └── tthash.cpp ├── thread │ ├── Makefile │ └── tryme.cpp ├── turbchan │ ├── .gitignore │ ├── Makefile │ ├── turbchan.con │ ├── turbchan.epl │ ├── turbchan.ini │ ├── turbchan.nod │ ├── turbchan.peri │ └── verify.pl ├── turbchanw │ ├── .gitignore │ ├── Makefile │ ├── check.swturb.m │ ├── mkmesh.m │ ├── nodes.some │ ├── shallowt.m │ ├── shallw.epl │ ├── swturb.ans │ ├── tcini.m │ ├── turbchanw.epl │ └── turbchanw.m ├── wallke │ ├── Makefile │ ├── mkmesh.m │ ├── proc.m │ ├── startup.m │ ├── wallke.epl │ └── wallke.some ├── wallkechan │ ├── Makefile │ ├── ctff2.m │ ├── cutoff.m │ ├── latv.m │ ├── mkmesh.m │ ├── proc.m │ ├── read_state.m │ ├── readperm.pl │ ├── startup.m │ ├── try1.m │ ├── wallke.epl │ └── wallke.some └── wkepipe │ ├── Makefile │ ├── extrude.m │ ├── iwallf.m │ ├── mkmesh.m │ ├── proc.m │ ├── wallf.m │ ├── wallke.epl │ └── wallke.some └── tools ├── .gitignore ├── Makefile ├── TestTree.pm ├── addheader.pl ├── checktag ├── coall ├── compdate.cppin ├── dx.pl ├── dxyuv.cpp ├── emacs ├── emoticons ├── eperl ├── eperl_license.txt ├── eperl_min ├── femref ├── .gitignore ├── Makefile ├── abb.scm ├── bjhash.c ├── collis.m ├── combiner.cpp ├── coord.dat ├── cube.dx.epl ├── data.pl ├── dvector-bck.scm ├── dvector-epl.cpp ├── dvector.cpp ├── dvector.h ├── dvector.scm ├── dvector2.cpp ├── dvector2.h ├── dvectord.cpp ├── dvectord.x ├── dvectori.cpp ├── dvectori.x ├── femref.cpp ├── femref.h ├── femref.scm ├── femref2.cpp ├── generperm.scm ├── getsurf.cpp ├── getsurf.scm ├── getsurf2.cpp ├── gsguile.cpp ├── gsguile.x ├── gtemplates.cpp ├── gtemplates.h ├── guile-mail.txt ├── guile2.txt ├── guilemac.h ├── hashedann.cpp ├── hasher.cpp ├── hasher.h ├── icone.dat ├── makefilec.d ├── md5-ok.c ├── md5-orig.h ├── md5.c ├── md5.h ├── md5r.c ├── mkcube.m ├── mpi.cpp ├── mpiguile.cpp ├── mpitest.cpp ├── myhash.cpp ├── myhash2.cpp ├── myhash3.cpp ├── myhash4.cpp ├── myhash5.cpp ├── nsi3d.cfg ├── nsi3d.net ├── proc.m ├── scm.mail ├── sha1.c ├── sha1.h ├── stlhash.cpp ├── test1.scm ├── test2.scm ├── test3.scm ├── test4.scm ├── test5.scm ├── tetra.con ├── tetra.nod ├── tree.h ├── trymd5.c ├── tryme.m ├── tryme2.cpp ├── tryme2.m ├── trymem.cpp ├── trympi.scm ├── tryserial.scm ├── trytree.cpp ├── utils.scm ├── visitor.cpp └── while2.scm ├── fixobj ├── git-exclude ├── gmv.pl ├── hexasplit.cpp ├── hexenco.1 ├── hexenco.pl ├── hexenco.txt ├── insert_license.pl ├── license.c ├── license.cpp ├── license.script ├── license.tex ├── license.txt ├── ltagdate ├── makeltag ├── maketag ├── makewhat.1 ├── makewhat.pl ├── makewhat.txt ├── math.pl ├── mpicookie.cpp ├── myexpect.1 ├── myexpect.html ├── myexpect.pl ├── myexpect.txt ├── nettest.cpp ├── nettest.m ├── odoc.1 ├── odoc.pl ├── odoc.txt ├── petsc_2.1.3_upgrade.sh ├── petscfem-init.el ├── petscfem.el ├── petscload.m ├── petscload.pl ├── pfcpp ├── pfversion.h.undef ├── project ├── .gitignore ├── Makefile ├── fluent-in.dx ├── fluent.dx ├── interp2.m ├── interp3d.m ├── interp4.m ├── interpola.m ├── mesh1.con ├── mesh1.nod ├── mesh2.nod ├── mktest.m ├── mktest2.m ├── proc.m ├── project-surf.cpp ├── project-wrp.cpp ├── project-wrp.x ├── project.cpp ├── project.h ├── project.scm ├── project2.cpp ├── project3.cpp ├── project4.cpp ├── project5.cpp ├── remvks.scm ├── tatuus.cfg ├── tatuus.dx ├── tatuus.net ├── trydvec.scm ├── trygoops.scm ├── trygoops2.scm ├── trygoops3.scm ├── trykeyw.scm └── trykeyw2.scm ├── tree.pl ├── tree.pm └── utils.pl /.gitignore: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/mstorti/petscfem/HEAD/.gitignore -------------------------------------------------------------------------------- /COPYING: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/mstorti/petscfem/HEAD/COPYING -------------------------------------------------------------------------------- /GNU_Linux.txt: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/mstorti/petscfem/HEAD/GNU_Linux.txt -------------------------------------------------------------------------------- /Makefile: -------------------------------------------------------------------------------- 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