├── .gitignore ├── DGCNN_embedding.py ├── LICENSE ├── README.md ├── data ├── COLLAB │ ├── 10fold_idx │ │ ├── test_idx-1.txt │ │ ├── test_idx-10.txt │ │ ├── test_idx-2.txt │ │ ├── test_idx-3.txt │ │ ├── test_idx-4.txt │ │ ├── test_idx-5.txt │ │ ├── test_idx-6.txt │ │ ├── test_idx-7.txt │ │ ├── test_idx-8.txt │ │ ├── test_idx-9.txt │ │ ├── train_idx-1.txt │ │ ├── train_idx-10.txt │ │ ├── train_idx-2.txt │ │ ├── train_idx-3.txt │ │ ├── train_idx-4.txt │ │ ├── train_idx-5.txt │ │ ├── train_idx-6.txt │ │ ├── train_idx-7.txt │ │ ├── train_idx-8.txt │ │ └── train_idx-9.txt │ ├── COLLAB.mat │ └── COLLAB.txt ├── DD │ ├── 10fold_idx │ │ ├── test_idx-1.txt │ │ ├── test_idx-10.txt │ │ ├── test_idx-2.txt │ │ ├── test_idx-3.txt │ │ ├── test_idx-4.txt │ │ ├── test_idx-5.txt │ │ ├── test_idx-6.txt │ │ ├── test_idx-7.txt │ │ ├── test_idx-8.txt │ │ ├── test_idx-9.txt │ │ ├── train_idx-1.txt │ │ ├── train_idx-10.txt │ │ ├── train_idx-2.txt │ │ ├── train_idx-3.txt │ │ ├── train_idx-4.txt │ │ ├── train_idx-5.txt │ │ ├── train_idx-6.txt │ │ ├── train_idx-7.txt │ │ ├── train_idx-8.txt │ │ └── train_idx-9.txt │ ├── DD.mat │ └── DD.txt ├── ENZYMES │ ├── 10fold_idx │ │ ├── test_idx-1.txt │ │ ├── test_idx-10.txt │ │ ├── test_idx-2.txt │ │ ├── test_idx-3.txt │ │ ├── test_idx-4.txt │ │ ├── test_idx-5.txt │ │ ├── test_idx-6.txt │ │ ├── test_idx-7.txt │ │ ├── test_idx-8.txt │ │ ├── test_idx-9.txt │ │ ├── train_idx-1.txt │ │ ├── train_idx-10.txt │ │ ├── train_idx-2.txt │ │ ├── train_idx-3.txt │ │ ├── train_idx-4.txt │ │ ├── train_idx-5.txt │ │ ├── train_idx-6.txt │ │ ├── train_idx-7.txt │ │ ├── train_idx-8.txt │ │ └── train_idx-9.txt │ ├── ENZYMES.mat │ └── ENZYMES.txt ├── IMDBBINARY │ ├── 10fold_idx │ │ ├── test_idx-1.txt │ │ ├── test_idx-10.txt │ │ ├── test_idx-2.txt │ │ ├── test_idx-3.txt │ │ ├── test_idx-4.txt │ │ ├── test_idx-5.txt │ │ ├── test_idx-6.txt │ │ ├── test_idx-7.txt │ │ ├── test_idx-8.txt │ │ ├── test_idx-9.txt │ │ ├── train_idx-1.txt │ │ ├── train_idx-10.txt │ │ ├── train_idx-2.txt │ │ ├── train_idx-3.txt │ │ ├── train_idx-4.txt │ │ ├── train_idx-5.txt │ │ ├── train_idx-6.txt │ │ ├── train_idx-7.txt │ │ ├── train_idx-8.txt │ │ └── train_idx-9.txt │ ├── IMDBBINARY.mat │ └── IMDBBINARY.txt ├── IMDBMULTI │ ├── 10fold_idx │ │ ├── test_idx-1.txt │ │ ├── test_idx-10.txt │ │ ├── test_idx-2.txt │ │ ├── test_idx-3.txt │ │ ├── test_idx-4.txt │ │ ├── test_idx-5.txt │ │ ├── test_idx-6.txt │ │ ├── test_idx-7.txt │ │ ├── test_idx-8.txt │ │ ├── test_idx-9.txt │ │ ├── train_idx-1.txt │ │ ├── train_idx-10.txt │ │ ├── train_idx-2.txt │ │ ├── train_idx-3.txt │ │ ├── train_idx-4.txt │ │ ├── train_idx-5.txt │ │ ├── train_idx-6.txt │ │ ├── train_idx-7.txt │ │ ├── train_idx-8.txt │ │ └── train_idx-9.txt │ ├── IMDBMULTI.mat │ └── IMDBMULTI.txt ├── MUTAG │ ├── 10fold_idx │ │ ├── test_idx-1.txt │ │ ├── test_idx-10.txt │ │ ├── test_idx-2.txt │ │ ├── test_idx-3.txt │ │ ├── test_idx-4.txt │ │ ├── test_idx-5.txt │ │ ├── test_idx-6.txt │ │ ├── test_idx-7.txt │ │ ├── test_idx-8.txt │ │ ├── test_idx-9.txt │ │ ├── train_idx-1.txt │ │ ├── train_idx-10.txt │ │ ├── train_idx-2.txt │ │ ├── train_idx-3.txt │ │ ├── train_idx-4.txt │ │ ├── train_idx-5.txt │ │ ├── train_idx-6.txt │ │ ├── train_idx-7.txt │ │ ├── train_idx-8.txt │ │ └── train_idx-9.txt │ ├── MUTAG.mat │ └── MUTAG.txt ├── NCI1 │ ├── 10fold_idx │ │ ├── test_idx-1.txt │ │ ├── test_idx-10.txt │ │ ├── test_idx-2.txt │ │ ├── test_idx-3.txt │ │ ├── test_idx-4.txt │ │ ├── test_idx-5.txt │ │ ├── test_idx-6.txt │ │ ├── test_idx-7.txt │ │ ├── test_idx-8.txt │ │ ├── test_idx-9.txt │ │ ├── train_idx-1.txt │ │ ├── train_idx-10.txt │ │ ├── train_idx-2.txt │ │ ├── train_idx-3.txt │ │ ├── train_idx-4.txt │ │ ├── train_idx-5.txt │ │ ├── train_idx-6.txt │ │ ├── train_idx-7.txt │ │ ├── train_idx-8.txt │ │ └── train_idx-9.txt │ ├── NCI1.mat │ └── NCI1.txt ├── NCI109 │ ├── 10fold_idx │ │ ├── test_idx-1.txt │ │ ├── test_idx-10.txt │ │ ├── test_idx-2.txt │ │ ├── test_idx-3.txt │ │ ├── test_idx-4.txt │ │ ├── test_idx-5.txt │ │ ├── test_idx-6.txt │ │ ├── test_idx-7.txt │ │ ├── test_idx-8.txt │ │ ├── test_idx-9.txt │ │ ├── train_idx-1.txt │ │ ├── train_idx-10.txt │ │ ├── train_idx-2.txt │ │ ├── train_idx-3.txt │ │ ├── train_idx-4.txt │ │ ├── train_idx-5.txt │ │ ├── train_idx-6.txt │ │ ├── train_idx-7.txt │ │ ├── train_idx-8.txt │ │ └── train_idx-9.txt │ ├── NCI109.mat │ └── NCI109.txt ├── PROTEINS │ ├── 10fold_idx │ │ ├── test_idx-1.txt │ │ ├── test_idx-10.txt │ │ ├── test_idx-2.txt │ │ ├── test_idx-3.txt │ │ ├── test_idx-4.txt │ │ ├── test_idx-5.txt │ │ ├── test_idx-6.txt │ │ ├── test_idx-7.txt │ │ ├── test_idx-8.txt │ │ ├── test_idx-9.txt │ │ ├── train_idx-1.txt │ │ ├── train_idx-10.txt │ │ ├── train_idx-2.txt │ │ ├── train_idx-3.txt │ │ ├── train_idx-4.txt │ │ ├── train_idx-5.txt │ │ ├── train_idx-6.txt │ │ ├── train_idx-7.txt │ │ ├── train_idx-8.txt │ │ └── train_idx-9.txt │ ├── PROTEINS.mat │ └── PROTEINS.txt ├── PTC │ ├── 10fold_idx │ │ ├── test_idx-1.txt │ │ ├── test_idx-10.txt │ │ ├── test_idx-2.txt │ │ ├── test_idx-3.txt │ │ ├── test_idx-4.txt │ │ ├── test_idx-5.txt │ │ ├── test_idx-6.txt │ │ ├── test_idx-7.txt │ │ ├── test_idx-8.txt │ │ ├── test_idx-9.txt │ │ ├── train_idx-1.txt │ │ ├── train_idx-10.txt │ │ ├── train_idx-2.txt │ │ ├── train_idx-3.txt │ │ ├── train_idx-4.txt │ │ ├── train_idx-5.txt │ │ ├── train_idx-6.txt │ │ ├── train_idx-7.txt │ │ ├── train_idx-8.txt │ │ └── train_idx-9.txt │ ├── PTC.mat │ └── PTC.txt ├── README.md ├── Synthie │ ├── 10fold_idx │ │ ├── test_idx-1.txt │ │ ├── test_idx-10.txt │ │ ├── test_idx-2.txt │ │ ├── test_idx-3.txt │ │ ├── test_idx-4.txt │ │ ├── test_idx-5.txt │ │ ├── test_idx-6.txt │ │ ├── test_idx-7.txt │ │ ├── test_idx-8.txt │ │ ├── test_idx-9.txt │ │ ├── train_idx-1.txt │ │ ├── train_idx-10.txt │ │ ├── train_idx-2.txt │ │ ├── train_idx-3.txt │ │ ├── train_idx-4.txt │ │ ├── train_idx-5.txt │ │ ├── train_idx-6.txt │ │ ├── train_idx-7.txt │ │ ├── train_idx-8.txt │ │ └── train_idx-9.txt │ ├── README.txt │ ├── README.txt~ │ ├── Synthie.txt │ ├── Synthie_A.txt │ ├── Synthie_graph_indicator.txt │ ├── Synthie_graph_labels.txt │ └── Synthie_node_attributes.txt ├── dortmund2txt.m └── mat2txt.m ├── lib ├── Makefile ├── build │ ├── dll │ │ ├── libgnn.d │ │ └── libgnn.so │ └── lib │ │ ├── config.d │ │ ├── config.o │ │ ├── graph_struct.d │ │ ├── graph_struct.o │ │ ├── msg_pass.d │ │ └── msg_pass.o ├── gnn_lib.py ├── include │ ├── config.h │ ├── gnn_lib.h │ ├── graph_struct.h │ └── msg_pass.h ├── pytorch_util.py └── src │ ├── gnn_lib.cpp │ └── lib │ ├── config.cpp │ ├── graph_struct.cpp │ └── msg_pass.cpp ├── main.py ├── mlp_dropout.py ├── run_DGCNN.sh └── util.py /.gitignore: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/muhanzhang/pytorch_DGCNN/HEAD/.gitignore -------------------------------------------------------------------------------- /DGCNN_embedding.py: -------------------------------------------------------------------------------- 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