├── LICENSE ├── README.md ├── confold-v2.0.zip └── confold-v2.0 ├── confold2-main.pl ├── core.pl ├── dry-run └── input │ ├── 1guu.rr │ ├── 1guu.ss │ ├── 3e7u.rr │ ├── 3e7u.ss │ ├── T0824.rr │ └── T0824.ss ├── readme.txt ├── suppl-scripts ├── coneva-lite.pl ├── eval-using-tmscore.pl ├── kill_processes.sh ├── pdb2rr.pl ├── pdb2seq-with-gaps.pl ├── pdb2ss.pl ├── psipred2ss.pl ├── reindex-pdb-1-to-x.pl ├── reindex-pdb.pl ├── rr-precision-cb.pl ├── rr2fasta.pl ├── test-freecontact.pl ├── trim-pdb.pl └── wait-for-parallel-run.sh └── third-party-programs ├── TMscore ├── dssp-2.0.4-linux-amd64 └── maxcluster64bit /LICENSE: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/multicom-toolbox/CONFOLD2/HEAD/LICENSE -------------------------------------------------------------------------------- /README.md: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/multicom-toolbox/CONFOLD2/HEAD/README.md -------------------------------------------------------------------------------- /confold-v2.0.zip: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/multicom-toolbox/CONFOLD2/HEAD/confold-v2.0.zip -------------------------------------------------------------------------------- /confold-v2.0/confold2-main.pl: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/multicom-toolbox/CONFOLD2/HEAD/confold-v2.0/confold2-main.pl -------------------------------------------------------------------------------- /confold-v2.0/core.pl: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/multicom-toolbox/CONFOLD2/HEAD/confold-v2.0/core.pl -------------------------------------------------------------------------------- /confold-v2.0/dry-run/input/1guu.rr: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/multicom-toolbox/CONFOLD2/HEAD/confold-v2.0/dry-run/input/1guu.rr -------------------------------------------------------------------------------- /confold-v2.0/dry-run/input/1guu.ss: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/multicom-toolbox/CONFOLD2/HEAD/confold-v2.0/dry-run/input/1guu.ss -------------------------------------------------------------------------------- /confold-v2.0/dry-run/input/3e7u.rr: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/multicom-toolbox/CONFOLD2/HEAD/confold-v2.0/dry-run/input/3e7u.rr -------------------------------------------------------------------------------- /confold-v2.0/dry-run/input/3e7u.ss: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/multicom-toolbox/CONFOLD2/HEAD/confold-v2.0/dry-run/input/3e7u.ss -------------------------------------------------------------------------------- /confold-v2.0/dry-run/input/T0824.rr: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/multicom-toolbox/CONFOLD2/HEAD/confold-v2.0/dry-run/input/T0824.rr -------------------------------------------------------------------------------- /confold-v2.0/dry-run/input/T0824.ss: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/multicom-toolbox/CONFOLD2/HEAD/confold-v2.0/dry-run/input/T0824.ss -------------------------------------------------------------------------------- /confold-v2.0/readme.txt: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/multicom-toolbox/CONFOLD2/HEAD/confold-v2.0/readme.txt -------------------------------------------------------------------------------- /confold-v2.0/suppl-scripts/coneva-lite.pl: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/multicom-toolbox/CONFOLD2/HEAD/confold-v2.0/suppl-scripts/coneva-lite.pl -------------------------------------------------------------------------------- /confold-v2.0/suppl-scripts/eval-using-tmscore.pl: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/multicom-toolbox/CONFOLD2/HEAD/confold-v2.0/suppl-scripts/eval-using-tmscore.pl -------------------------------------------------------------------------------- /confold-v2.0/suppl-scripts/kill_processes.sh: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/multicom-toolbox/CONFOLD2/HEAD/confold-v2.0/suppl-scripts/kill_processes.sh -------------------------------------------------------------------------------- /confold-v2.0/suppl-scripts/pdb2rr.pl: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/multicom-toolbox/CONFOLD2/HEAD/confold-v2.0/suppl-scripts/pdb2rr.pl -------------------------------------------------------------------------------- /confold-v2.0/suppl-scripts/pdb2seq-with-gaps.pl: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/multicom-toolbox/CONFOLD2/HEAD/confold-v2.0/suppl-scripts/pdb2seq-with-gaps.pl -------------------------------------------------------------------------------- /confold-v2.0/suppl-scripts/pdb2ss.pl: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/multicom-toolbox/CONFOLD2/HEAD/confold-v2.0/suppl-scripts/pdb2ss.pl -------------------------------------------------------------------------------- /confold-v2.0/suppl-scripts/psipred2ss.pl: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/multicom-toolbox/CONFOLD2/HEAD/confold-v2.0/suppl-scripts/psipred2ss.pl -------------------------------------------------------------------------------- /confold-v2.0/suppl-scripts/reindex-pdb-1-to-x.pl: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/multicom-toolbox/CONFOLD2/HEAD/confold-v2.0/suppl-scripts/reindex-pdb-1-to-x.pl -------------------------------------------------------------------------------- /confold-v2.0/suppl-scripts/reindex-pdb.pl: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/multicom-toolbox/CONFOLD2/HEAD/confold-v2.0/suppl-scripts/reindex-pdb.pl -------------------------------------------------------------------------------- /confold-v2.0/suppl-scripts/rr-precision-cb.pl: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/multicom-toolbox/CONFOLD2/HEAD/confold-v2.0/suppl-scripts/rr-precision-cb.pl -------------------------------------------------------------------------------- /confold-v2.0/suppl-scripts/rr2fasta.pl: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/multicom-toolbox/CONFOLD2/HEAD/confold-v2.0/suppl-scripts/rr2fasta.pl -------------------------------------------------------------------------------- /confold-v2.0/suppl-scripts/test-freecontact.pl: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/multicom-toolbox/CONFOLD2/HEAD/confold-v2.0/suppl-scripts/test-freecontact.pl -------------------------------------------------------------------------------- /confold-v2.0/suppl-scripts/trim-pdb.pl: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/multicom-toolbox/CONFOLD2/HEAD/confold-v2.0/suppl-scripts/trim-pdb.pl -------------------------------------------------------------------------------- /confold-v2.0/suppl-scripts/wait-for-parallel-run.sh: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/multicom-toolbox/CONFOLD2/HEAD/confold-v2.0/suppl-scripts/wait-for-parallel-run.sh -------------------------------------------------------------------------------- /confold-v2.0/third-party-programs/TMscore: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/multicom-toolbox/CONFOLD2/HEAD/confold-v2.0/third-party-programs/TMscore -------------------------------------------------------------------------------- /confold-v2.0/third-party-programs/dssp-2.0.4-linux-amd64: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/multicom-toolbox/CONFOLD2/HEAD/confold-v2.0/third-party-programs/dssp-2.0.4-linux-amd64 -------------------------------------------------------------------------------- /confold-v2.0/third-party-programs/maxcluster64bit: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/multicom-toolbox/CONFOLD2/HEAD/confold-v2.0/third-party-programs/maxcluster64bit --------------------------------------------------------------------------------