├── .Rbuildignore ├── .github ├── .gitignore └── workflows │ ├── check-standard.yaml │ └── pkgdown.yaml ├── .gitignore ├── DESCRIPTION ├── LICENSE.md ├── NAMESPACE ├── NEWS.md ├── R ├── internal_utils.R ├── multiqc.R ├── plot_parsers.R └── plots.R ├── README.Rmd ├── README.md ├── _pkgdown.yml ├── cran-comments.md ├── inst └── extdata │ ├── HG00096 │ └── multiqc_data.json │ ├── HG00097 │ └── multiqc_data.json │ ├── general_list │ └── multiqc_data.json │ └── wgs │ └── multiqc_data.json ├── man ├── TidyMultiqc-package.Rd ├── list_plots.Rd ├── load_multiqc.Rd ├── parse_bar_graph.Rd └── parse_xyline_plot.Rd ├── multiqc.Rproj ├── tests ├── testthat.R └── testthat │ ├── test-1000g.R │ ├── test-edge-cases.R │ ├── test-ensemble.R │ ├── test-metadata.R │ ├── test-multiqc-examples.R │ ├── test-parsers.R │ └── test-plot-list.R └── vignettes ├── .gitignore └── TidyMultiqc.Rmd /.Rbuildignore: -------------------------------------------------------------------------------- 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