├── .DS_Store ├── ._.DS_Store ├── .gitignore ├── LICENSE ├── README.md ├── corrfield ├── __pycache__ │ ├── filters.cpython-39.pyc │ ├── foerstner.cpython-39.pyc │ ├── thin_plate_spline.cpython-39.pyc │ └── utils.cpython-39.pyc ├── belief_propagation.py ├── corrfield.py ├── filters.py ├── foerstner.py ├── graphs.py ├── mindssc.py ├── readme.md ├── similarity.py ├── template_function.py ├── thin_plate_spline.py └── utils.py ├── data_curation ├── cookies.zip ├── copd_bboxes_and_lms_1mm.pth ├── crop_copd.py ├── download_external.sh ├── download_external_copd.sh ├── empire_bbox_crop.pth ├── nbia_pydicom_pre.py ├── nlst_test_nbia.csv ├── process_copd.py ├── process_empire.py └── readme.md ├── environment.yaml ├── evaluation ├── ._visualise_and_evaluate_image.py ├── evaluate.py ├── lms_validation.pth ├── readme.md └── visualise_and_evaluate_image.py ├── figures_pdf ├── 773_lung250m_4b_a_combined_3d_data-Supplementary Material.pdf ├── Lung250M-4B_paper.pdf ├── Lung250M-4B_suppl.pdf ├── NeurIPS_2023_Submission_Lung250M-4B.pdf ├── neurips_table2.pdf ├── neurips_table2.png ├── qual_results_ppwc.pdf ├── qual_results_ppwc.png ├── readme.md ├── reg_example.pdf ├── reg_example.png ├── visualise_streamlit.png └── wbir2022_voxelmorph2.png ├── pointcloud_extraction ├── pc_generate.py └── readme.md ├── predict_vxmpp ├── ._case_002.csv ├── case_002.csv ├── case_008.csv ├── case_054.csv ├── case_055.csv ├── case_056.csv ├── case_094.csv ├── case_097.csv ├── case_104.csv ├── case_105.csv ├── case_106.csv ├── case_107.csv ├── case_108.csv ├── case_109.csv ├── case_110.csv ├── case_111.csv ├── case_112.csv └── case_113.csv ├── registration_models ├── ._data_utils.py ├── ._inference_vxmpp.py ├── __pycache__ │ ├── data_utils.cpython-39.pyc │ └── vxmplusplus_utils.cpython-39.pyc ├── data_utils.py ├── inference_vxmpp.py ├── point_pwc │ ├── config_ppwc_sup.yaml │ ├── config_ppwc_syn.yaml │ ├── dataset.py │ ├── defaults.py │ ├── inference.py │ ├── pointconv_util.py │ ├── pointnet2 │ │ ├── __init__.py │ │ ├── __pycache__ │ │ │ └── __init__.cpython-39.pyc │ │ ├── lib │ │ │ ├── __init__.py │ │ │ ├── __pycache__ │ │ │ │ ├── __init__.cpython-39.pyc │ │ │ │ └── pointnet2_utils.cpython-39.pyc │ │ │ ├── pointnet2_modules.py │ │ │ ├── pointnet2_utils.py │ │ │ ├── pytorch_utils.py │ │ │ ├── setup.py │ │ │ └── src │ │ │ │ ├── ball_query.cpp │ │ │ │ ├── ball_query_gpu.cu │ │ │ │ ├── ball_query_gpu.h │ │ │ │ ├── cuda_utils.h │ │ │ │ ├── group_points.cpp │ │ │ │ ├── group_points_gpu.cu │ │ │ │ ├── group_points_gpu.h │ │ │ │ ├── interpolate.cpp │ │ │ │ ├── interpolate_gpu.cu │ │ │ │ ├── interpolate_gpu.h │ │ │ │ ├── pointnet2_api.cpp │ │ │ │ ├── sampling.cpp │ │ │ │ ├── sampling_gpu.cu │ │ │ │ └── sampling_gpu.h │ │ └── util.py │ ├── ppwc.py │ ├── readme.md │ └── train.py ├── predictions.pth ├── readme.md ├── train_vxmpp_MIND_unsupervised.py ├── train_vxmpp_supervised.py ├── voxelmorphplusplus.pth └── vxmplusplus_utils.py └── visualise_streamlit.png /.DS_Store: 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