├── .github └── workflows │ └── run-unit-tests-with-coverage.yml ├── .gitignore ├── LICENSE ├── README.md ├── codex ├── __init__.py ├── blueprints │ ├── app.py │ └── base.py ├── configuration.py ├── data │ ├── auto_naming.py │ ├── brain_regions.py │ ├── catalog.py │ ├── connections.py │ ├── faq_qa_kb.py │ ├── local_data_loader.py │ ├── neuron_data.py │ ├── neuron_data_factory.py │ ├── neuron_data_initializer.py │ ├── neurotransmitters.py │ ├── search_index.py │ ├── sorting.py │ ├── structured_search_filters.py │ ├── versions.py │ └── vocabulary.py ├── main.py ├── service │ ├── cell_details.py │ ├── heatmaps.py │ ├── motif_search.py │ ├── network.py │ ├── search.py │ └── stats.py ├── static │ ├── assets │ │ ├── bgd1.png │ │ ├── bgd2.png │ │ ├── bgd3.png │ │ ├── bgd4.png │ │ ├── bgd5.png │ │ ├── bgd6.png │ │ ├── card-cell-details.png │ │ ├── card-data.png │ │ ├── card-explore.jpg │ │ ├── card-labelsugg.jpg │ │ ├── card-nblast.jpg │ │ ├── card-network.png │ │ ├── card-pathways.png │ │ ├── card-search.jpg │ │ ├── card-stats.jpg │ │ ├── codex-icon-color.png │ │ ├── leaderboard.png │ │ ├── neuropils.gif │ │ └── token_screenshot.png │ ├── favicon-16x16.png │ ├── favicon-32x32.png │ ├── favicon.ico │ ├── js │ │ └── motif_search.js │ └── styles │ │ ├── base.css │ │ └── index.css ├── templates │ ├── about_codex.html │ ├── about_flywire.html │ ├── advanced_search.html │ ├── attribute_with_multiple_values.html │ ├── attribute_with_spot_filter.html │ ├── base.html │ ├── base_barebones.html │ ├── cell_annotations_modal.html │ ├── cell_details.html │ ├── community_labels_modal.html │ ├── connectivity.html │ ├── connectivity_tags_modal.html │ ├── error.html │ ├── explore.html │ ├── faq.html │ ├── heatmaps.html │ ├── index.html │ ├── info.html │ ├── leaderboard.html │ ├── many_cells_form.html │ ├── motif_search.html │ ├── network_graph.html │ ├── network_settings.html │ ├── neuropils.html │ ├── path_lengths.html │ ├── results_actions.html │ ├── search.html │ ├── search_settings.html │ ├── stats.html │ ├── synapses_modal.html │ └── warning_with_redirect.html └── utils │ ├── formatting.py │ ├── graph_algos.py │ ├── graph_vis.py │ ├── label_cleaning.py │ ├── networking.py │ ├── nglui.py │ ├── number_compacter.py │ ├── parsing.py │ ├── pathway_vis.py │ ├── print_profiling_data.py │ ├── stats.py │ └── thumbnails.py ├── poetry.toml ├── pull_request_template.md ├── pyproject.toml ├── scripts ├── lint.sh ├── make_data.sh ├── run_local.sh ├── run_local_dev.sh └── run_unit_tests.sh └── tests ├── __init__.py ├── run_unit_tests_with_coverage.py └── unit ├── __init__.py ├── test_brain_regions.py ├── test_catalog.py ├── test_connectivity.py ├── test_faq_qa_kb.py ├── test_formatting.py ├── test_graph_algos.py ├── test_heatmaps.py ├── test_motif_search.py ├── test_network_graph.py ├── test_neuron_data.py ├── test_neuron_data_initializer.py ├── test_neurotransmitters.py ├── test_number_compacter.py ├── test_parsing.py ├── test_pathway_vis.py ├── test_search.py ├── 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