├── .Rbuildignore ├── .gitignore ├── DESCRIPTION ├── NAMESPACE ├── NEWS.md ├── R ├── bmlm-package.R ├── data.R ├── mlm.R ├── mlm_plot.R ├── stanmodels.R ├── utils.R └── zzz.R ├── README.Rmd ├── README.md ├── _pkgdown.yml ├── bmlm.Rproj ├── configure ├── configure.win ├── cran-comments.md ├── data ├── BLch9.rda └── MEC2010.rda ├── docs ├── 404.html ├── articles │ ├── FAQ │ │ └── FAQ.html │ ├── Spaghetti-Plots │ │ ├── Spaghetti-Plots.html │ │ └── Spaghetti-Plots_files │ │ │ └── figure-html │ │ │ ├── unnamed-chunk-5-1.png │ │ │ └── unnamed-chunk-6-1.png │ ├── bmlm-blch9 │ │ ├── bmlm-blch9.html │ │ ├── bmlm-blch9_files │ │ │ └── figure-html │ │ │ │ ├── unnamed-chunk-10-1.png │ │ │ │ ├── unnamed-chunk-11-1.png │ │ │ │ ├── unnamed-chunk-11-2.png │ │ │ │ ├── unnamed-chunk-11-3.png │ │ │ │ ├── unnamed-chunk-12-1.png │ │ │ │ ├── unnamed-chunk-13-1.png │ │ │ │ ├── unnamed-chunk-14-1.png │ │ │ │ ├── unnamed-chunk-16-1.png │ │ │ │ ├── unnamed-chunk-17-1.png │ │ │ │ ├── unnamed-chunk-18-1.png │ │ │ 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jquery.sticky-kit.min.js ├── link.svg ├── news │ └── index.html ├── pkgdown.css ├── pkgdown.js ├── pkgdown.yml └── reference │ ├── BLch9.html │ ├── MEC2010.html │ ├── bmlm-package.html │ ├── bmlm.html │ ├── index.html │ ├── isolate.html │ ├── mlm.html │ ├── mlm_pars_plot.html │ ├── mlm_path_plot-1.png │ ├── mlm_path_plot.html │ ├── mlm_spaghetti_plot.html │ ├── mlm_summary.html │ └── tab2doc.html ├── inst ├── CITATION ├── chunks │ └── license.stan ├── include │ └── stan_meta_header.hpp └── stan │ ├── bmlm.stan │ ├── bmlm_binary_y.stan │ └── chunks │ ├── common_functions.stan │ ├── data.stan │ ├── generated_quantities.stan │ ├── model.stan │ ├── parameters.stan │ ├── transformed_data.stan │ └── transformed_parameters.stan ├── man ├── BLch9.Rd ├── MEC2010.Rd ├── bmlm-package.Rd ├── isolate.Rd ├── mlm.Rd ├── mlm_pars_plot.Rd ├── mlm_path_plot.Rd ├── mlm_spaghetti_plot.Rd └── mlm_summary.Rd ├── src └── init.cpp └── vignettes ├── FAQ ├── FAQ.Rmd └── bibliography.bib ├── Spaghetti-Plots └── 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