├── .gitignore ├── LICENSE ├── README.md ├── _config.yml ├── detection ├── __init__.py ├── custom_loss.py └── detection_eval.py ├── detection_predict.py ├── detection_train.py ├── docker └── Dockerfile ├── graphcut.m ├── image ├── gt │ └── 00000.tif ├── proposed_method_overview.png ├── test │ ├── gt │ │ └── 00000.png │ └── ori │ │ └── 00000.png └── train │ ├── gt │ └── 00000.png │ └── ori │ └── 00000.png ├── likelymapgen.py ├── main.py ├── networks ├── __init__.py ├── network_model.py └── network_parts.py ├── output ├── guided │ └── 00000 │ │ ├── detection.png │ │ ├── instance.png │ │ ├── original.png │ │ └── peaks.txt └── seg │ ├── labelresults │ └── 00000label.png │ ├── result_bp │ └── 00000segbp.png │ └── results │ └── 00000seg.png ├── propagate_main.py ├── propagation ├── __init__.py ├── gen_guided_model │ ├── __init__.py │ ├── guided_model.py │ └── guided_parts.py └── guided_function.py ├── requirement.yml ├── review.py ├── run_docker.sh ├── sample_cell_position.txt ├── utils ├── __init__.py ├── color.csv ├── for_review.py ├── load.py └── matching.py └── weight └── best.pth /.gitignore: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/naivete5656/WSISPDR/HEAD/.gitignore -------------------------------------------------------------------------------- /LICENSE: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/naivete5656/WSISPDR/HEAD/LICENSE -------------------------------------------------------------------------------- /README.md: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/naivete5656/WSISPDR/HEAD/README.md -------------------------------------------------------------------------------- /_config.yml: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/naivete5656/WSISPDR/HEAD/_config.yml -------------------------------------------------------------------------------- /detection/__init__.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/naivete5656/WSISPDR/HEAD/detection/__init__.py -------------------------------------------------------------------------------- /detection/custom_loss.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/naivete5656/WSISPDR/HEAD/detection/custom_loss.py -------------------------------------------------------------------------------- /detection/detection_eval.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/naivete5656/WSISPDR/HEAD/detection/detection_eval.py -------------------------------------------------------------------------------- /detection_predict.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/naivete5656/WSISPDR/HEAD/detection_predict.py -------------------------------------------------------------------------------- /detection_train.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/naivete5656/WSISPDR/HEAD/detection_train.py -------------------------------------------------------------------------------- /docker/Dockerfile: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/naivete5656/WSISPDR/HEAD/docker/Dockerfile -------------------------------------------------------------------------------- /graphcut.m: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/naivete5656/WSISPDR/HEAD/graphcut.m -------------------------------------------------------------------------------- /image/gt/00000.tif: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/naivete5656/WSISPDR/HEAD/image/gt/00000.tif -------------------------------------------------------------------------------- /image/proposed_method_overview.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/naivete5656/WSISPDR/HEAD/image/proposed_method_overview.png -------------------------------------------------------------------------------- /image/test/gt/00000.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/naivete5656/WSISPDR/HEAD/image/test/gt/00000.png -------------------------------------------------------------------------------- /image/test/ori/00000.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/naivete5656/WSISPDR/HEAD/image/test/ori/00000.png -------------------------------------------------------------------------------- /image/train/gt/00000.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/naivete5656/WSISPDR/HEAD/image/train/gt/00000.png -------------------------------------------------------------------------------- /image/train/ori/00000.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/naivete5656/WSISPDR/HEAD/image/train/ori/00000.png -------------------------------------------------------------------------------- /likelymapgen.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/naivete5656/WSISPDR/HEAD/likelymapgen.py -------------------------------------------------------------------------------- /main.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/naivete5656/WSISPDR/HEAD/main.py -------------------------------------------------------------------------------- /networks/__init__.py: -------------------------------------------------------------------------------- 1 | from .network_model import UNet 2 | -------------------------------------------------------------------------------- /networks/network_model.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/naivete5656/WSISPDR/HEAD/networks/network_model.py -------------------------------------------------------------------------------- /networks/network_parts.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/naivete5656/WSISPDR/HEAD/networks/network_parts.py -------------------------------------------------------------------------------- /output/guided/00000/detection.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/naivete5656/WSISPDR/HEAD/output/guided/00000/detection.png -------------------------------------------------------------------------------- /output/guided/00000/instance.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/naivete5656/WSISPDR/HEAD/output/guided/00000/instance.png -------------------------------------------------------------------------------- /output/guided/00000/original.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/naivete5656/WSISPDR/HEAD/output/guided/00000/original.png -------------------------------------------------------------------------------- /output/guided/00000/peaks.txt: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/naivete5656/WSISPDR/HEAD/output/guided/00000/peaks.txt -------------------------------------------------------------------------------- /output/seg/labelresults/00000label.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/naivete5656/WSISPDR/HEAD/output/seg/labelresults/00000label.png -------------------------------------------------------------------------------- /output/seg/result_bp/00000segbp.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/naivete5656/WSISPDR/HEAD/output/seg/result_bp/00000segbp.png -------------------------------------------------------------------------------- /output/seg/results/00000seg.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/naivete5656/WSISPDR/HEAD/output/seg/results/00000seg.png -------------------------------------------------------------------------------- /propagate_main.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/naivete5656/WSISPDR/HEAD/propagate_main.py -------------------------------------------------------------------------------- /propagation/__init__.py: -------------------------------------------------------------------------------- 1 | from .guided_function import GuideCall 2 | -------------------------------------------------------------------------------- /propagation/gen_guided_model/__init__.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/naivete5656/WSISPDR/HEAD/propagation/gen_guided_model/__init__.py -------------------------------------------------------------------------------- /propagation/gen_guided_model/guided_model.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/naivete5656/WSISPDR/HEAD/propagation/gen_guided_model/guided_model.py -------------------------------------------------------------------------------- /propagation/gen_guided_model/guided_parts.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/naivete5656/WSISPDR/HEAD/propagation/gen_guided_model/guided_parts.py -------------------------------------------------------------------------------- /propagation/guided_function.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/naivete5656/WSISPDR/HEAD/propagation/guided_function.py -------------------------------------------------------------------------------- /requirement.yml: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/naivete5656/WSISPDR/HEAD/requirement.yml -------------------------------------------------------------------------------- /review.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/naivete5656/WSISPDR/HEAD/review.py -------------------------------------------------------------------------------- /run_docker.sh: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/naivete5656/WSISPDR/HEAD/run_docker.sh -------------------------------------------------------------------------------- /sample_cell_position.txt: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/naivete5656/WSISPDR/HEAD/sample_cell_position.txt -------------------------------------------------------------------------------- /utils/__init__.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/naivete5656/WSISPDR/HEAD/utils/__init__.py -------------------------------------------------------------------------------- /utils/color.csv: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/naivete5656/WSISPDR/HEAD/utils/color.csv -------------------------------------------------------------------------------- /utils/for_review.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/naivete5656/WSISPDR/HEAD/utils/for_review.py -------------------------------------------------------------------------------- /utils/load.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/naivete5656/WSISPDR/HEAD/utils/load.py -------------------------------------------------------------------------------- /utils/matching.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/naivete5656/WSISPDR/HEAD/utils/matching.py -------------------------------------------------------------------------------- /weight/best.pth: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/naivete5656/WSISPDR/HEAD/weight/best.pth --------------------------------------------------------------------------------