├── .gitignore ├── README.md ├── analysis ├── plotting_utils.py └── run_jointconv_inference.py ├── assets └── teaser.png ├── environment.yml ├── filepaths.py ├── motion_sim ├── diff_forward_model.py ├── multicoil_motion_simulator.py └── nufft_moco.py ├── optimization └── optimize_motion_params.py └── training ├── hypermodels.py ├── losses.py ├── make_configs.py ├── models.py ├── run_experiment.py ├── train.py └── training_config.py /.gitignore: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/nalinimsingh/neuroMoCo/HEAD/.gitignore -------------------------------------------------------------------------------- /README.md: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/nalinimsingh/neuroMoCo/HEAD/README.md -------------------------------------------------------------------------------- /analysis/plotting_utils.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/nalinimsingh/neuroMoCo/HEAD/analysis/plotting_utils.py -------------------------------------------------------------------------------- /analysis/run_jointconv_inference.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/nalinimsingh/neuroMoCo/HEAD/analysis/run_jointconv_inference.py -------------------------------------------------------------------------------- /assets/teaser.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/nalinimsingh/neuroMoCo/HEAD/assets/teaser.png -------------------------------------------------------------------------------- /environment.yml: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/nalinimsingh/neuroMoCo/HEAD/environment.yml -------------------------------------------------------------------------------- /filepaths.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/nalinimsingh/neuroMoCo/HEAD/filepaths.py -------------------------------------------------------------------------------- /motion_sim/diff_forward_model.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/nalinimsingh/neuroMoCo/HEAD/motion_sim/diff_forward_model.py -------------------------------------------------------------------------------- /motion_sim/multicoil_motion_simulator.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/nalinimsingh/neuroMoCo/HEAD/motion_sim/multicoil_motion_simulator.py -------------------------------------------------------------------------------- /motion_sim/nufft_moco.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/nalinimsingh/neuroMoCo/HEAD/motion_sim/nufft_moco.py -------------------------------------------------------------------------------- /optimization/optimize_motion_params.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/nalinimsingh/neuroMoCo/HEAD/optimization/optimize_motion_params.py -------------------------------------------------------------------------------- /training/hypermodels.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/nalinimsingh/neuroMoCo/HEAD/training/hypermodels.py -------------------------------------------------------------------------------- /training/losses.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/nalinimsingh/neuroMoCo/HEAD/training/losses.py -------------------------------------------------------------------------------- /training/make_configs.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/nalinimsingh/neuroMoCo/HEAD/training/make_configs.py -------------------------------------------------------------------------------- /training/models.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/nalinimsingh/neuroMoCo/HEAD/training/models.py -------------------------------------------------------------------------------- /training/run_experiment.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/nalinimsingh/neuroMoCo/HEAD/training/run_experiment.py -------------------------------------------------------------------------------- /training/train.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/nalinimsingh/neuroMoCo/HEAD/training/train.py -------------------------------------------------------------------------------- /training/training_config.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/nalinimsingh/neuroMoCo/HEAD/training/training_config.py --------------------------------------------------------------------------------