├── .editorconfig ├── .gitignore ├── AUTHORS ├── LICENSE ├── MANIFEST.in ├── README.md ├── conda_pkgs.txt ├── docs ├── Makefile ├── _static │ ├── example_config.yml │ ├── screenshot_01.png │ ├── screenshot_free_run.png │ ├── screenshot_particles.png │ ├── screenshot_save_image.png │ ├── screenshot_snap.png │ ├── screenshot_toolbar.png │ └── screenshot_tracking.png ├── conf.py ├── conf.py.bak ├── contribute_codebase.rst ├── developers │ ├── controller │ │ ├── devices │ │ │ ├── hamamatsu.rst │ │ │ ├── index.rst │ │ │ ├── keysight.rst │ │ │ └── photonicscience.rst │ │ └── index.rst │ ├── index.rst │ ├── model │ │ ├── cameras │ │ │ ├── base_camera.rst │ │ │ ├── basler.rst │ │ │ ├── dummy_camera.rst │ │ │ ├── hamamatsu.rst │ │ │ ├── index.rst │ │ │ ├── psi.rst │ │ │ └── simulate_brownian.rst │ │ ├── daqs │ │ │ └── index.rst │ │ ├── experiments │ │ │ ├── fiber_tracking.rst │ │ │ ├── index.rst │ │ │ └── np_tracking.rst │ │ └── index.rst │ ├── pynta.exceptions.rst │ ├── pynta.rst │ ├── pynta.tests.rst │ ├── pynta.tools.rst │ ├── pynta.util.rst │ └── view │ │ ├── GUI.rst │ │ └── index.rst ├── example_config.rst ├── getting_started.rst ├── index.rst ├── index.rst.bak ├── installing.rst ├── list_todo.rst ├── make.bat ├── making_virtual_environment.rst ├── media │ ├── example_config.yml │ ├── screenshot_01.png │ ├── screenshot_free_run.png │ ├── screenshot_particles.png │ ├── screenshot_save_image.png │ ├── screenshot_snap.png │ ├── screenshot_toolbar.png │ └── screenshot_tracking.png └── requirements_docs.txt ├── environment.yml ├── environment_docs.yml ├── examples ├── config │ ├── dispertech.yml │ └── nanocet.yml ├── simple_mp.py ├── start_motor_example.py ├── start_nanocet.py ├── test_basler.ipynb ├── test_tracking_speed.ipynb ├── test_tracking_speed.py ├── test_zmq.py ├── testing_basler.py └── window_with_logging.py ├── pynta ├── __init__.py ├── __main__.py ├── config.py ├── controller │ ├── __init__.py │ ├── data_sources │ │ └── __init__.py │ └── devices │ │ ├── __init__.py │ │ ├── arduino │ │ ├── __init__.py │ │ ├── arduino.py │ │ └── arduino_driver │ │ │ └── arduino_driver.ino │ │ ├── hamamatsu │ │ ├── __init__.py │ │ └── hamamatsu_camera.py │ │ ├── keysight │ │ ├── __init__.py │ │ └── infiniivision.py │ │ └── photonicscience │ │ ├── __init__.py │ │ └── scmoscam.py ├── exceptions │ ├── __init__.py │ └── exceptions.py ├── model │ ├── __init__.py │ ├── cameras │ │ ├── __init__.py │ │ ├── base_camera.py │ │ ├── basler.py │ │ ├── decorators.py │ │ ├── dummy_camera.py │ │ ├── exceptions.py │ │ ├── hamamatsu.py │ │ ├── psi.py │ │ └── simulate_brownian.py │ ├── daqs │ │ ├── NI.py │ │ ├── __init__.py │ │ ├── daq_dummy.py │ │ └── skeleton.py │ ├── exceptions.py │ ├── experiment │ │ ├── __init__.py │ │ ├── base_experiment.py │ │ ├── config.py │ │ ├── dispertech │ │ │ ├── __init__.py │ │ │ ├── database.py │ │ │ ├── fiber_tracking.py │ │ │ └── util.py │ │ ├── nanoparticle_tracking │ │ │ ├── __init__.py │ │ │ ├── decorators.py │ │ │ ├── exceptions.py │ │ │ ├── localization.py │ │ │ ├── motor_test.py │ │ │ ├── np_tracking.py │ │ │ ├── saver.py │ │ │ └── waterfall_worker.py │ │ ├── publisher.py │ │ └── subscriber.py │ └── motors │ │ └── arduino_base.py ├── tests │ ├── __init__.py │ ├── test_controllers.py │ ├── test_examples.py │ ├── test_models.py │ └── test_zmq.py ├── tools │ ├── __init__.py │ └── worker_thread.py ├── util │ ├── __init__.py │ ├── circular_buffer.py │ ├── example_config.yml │ ├── importer.py │ └── log.py └── view │ ├── GUI │ ├── Icons │ │ ├── LICENSE.txt │ │ ├── arrow_bottom.png │ │ ├── arrow_left.png │ │ ├── arrow_right.png │ │ ├── arrow_top.png │ │ ├── avocado_calibrate.svg │ │ ├── duotone_chart.svg │ │ ├── duotone_edit.svg │ │ ├── hatch_ask.svg │ │ ├── hatch_download.svg │ │ ├── hatch_enlarge.svg │ │ ├── pictogram_close.svg │ │ ├── pictogram_crop.svg │ │ ├── pictogram_link.svg │ │ ├── pictogram_open.svg │ │ ├── pictogram_play.svg │ │ ├── pictogram_record.svg │ │ ├── pictogram_save.svg │ │ ├── science-and-fiction_capture.svg │ │ ├── science-and-fiction_upload.svg │ │ └── sketchy_create.svg │ ├── __init__.py │ ├── camera_focusing.py │ ├── camera_viewer_widget.py │ ├── config_tracking_widget.py │ ├── config_widget.py │ ├── designer │ │ ├── MainWindow.ui │ │ ├── config_general.ui │ │ ├── focusing_window.ui │ │ ├── histogram_tracks.ui │ │ └── tracking_config.ui │ ├── histogram_tracks_widget.py │ ├── histogram_widget.py │ ├── main_window.py │ ├── old │ │ ├── Monitor │ │ │ ├── LocateParticle.py │ │ │ ├── __init__.py │ │ │ ├── cameraViewer.py │ │ │ ├── clearQueueThread.py │ │ │ ├── crossCut.py │ │ │ ├── popOut.py │ │ │ ├── resources.py │ │ │ ├── resources.xml │ │ │ └── specialTaskTrack.py │ │ ├── __init__.py │ │ ├── mainwindow.py │ │ ├── messageWidget.py │ │ ├── trajectoryWidget.py │ │ ├── waterfallWidget.py │ │ └── workerThread.py │ ├── resources.py │ ├── resources.qrc │ └── tracks_widget.py │ ├── __init__.py │ ├── main.py │ └── subscriber_thread.py ├── requirements.txt ├── 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