├── .gitignore ├── .gitlab-ci.yml ├── .gitmodules ├── CHANGELOG.md ├── LICENSE ├── MANIFEST.in ├── Makefile ├── README.md ├── conda ├── build.sh └── meta.yaml ├── pyproject.toml ├── pyspoa.cpp ├── setup.py └── tests └── test_pyspoa.py /.gitignore: -------------------------------------------------------------------------------- 1 | .eggs/ 2 | dist/ 3 | build/ 4 | *~ 5 | *.so 6 | *-info/ 7 | tmp/ 8 | pyspoa/ 9 | venv*/ -------------------------------------------------------------------------------- /.gitlab-ci.yml: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/nanoporetech/pyspoa/HEAD/.gitlab-ci.yml -------------------------------------------------------------------------------- /.gitmodules: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/nanoporetech/pyspoa/HEAD/.gitmodules -------------------------------------------------------------------------------- /CHANGELOG.md: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/nanoporetech/pyspoa/HEAD/CHANGELOG.md -------------------------------------------------------------------------------- /LICENSE: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/nanoporetech/pyspoa/HEAD/LICENSE -------------------------------------------------------------------------------- /MANIFEST.in: -------------------------------------------------------------------------------- 1 | recursive-include src/ * 2 | -------------------------------------------------------------------------------- /Makefile: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/nanoporetech/pyspoa/HEAD/Makefile -------------------------------------------------------------------------------- /README.md: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/nanoporetech/pyspoa/HEAD/README.md -------------------------------------------------------------------------------- /conda/build.sh: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/nanoporetech/pyspoa/HEAD/conda/build.sh -------------------------------------------------------------------------------- /conda/meta.yaml: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/nanoporetech/pyspoa/HEAD/conda/meta.yaml -------------------------------------------------------------------------------- /pyproject.toml: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/nanoporetech/pyspoa/HEAD/pyproject.toml -------------------------------------------------------------------------------- /pyspoa.cpp: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/nanoporetech/pyspoa/HEAD/pyspoa.cpp -------------------------------------------------------------------------------- /setup.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/nanoporetech/pyspoa/HEAD/setup.py -------------------------------------------------------------------------------- /tests/test_pyspoa.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/nanoporetech/pyspoa/HEAD/tests/test_pyspoa.py --------------------------------------------------------------------------------