├── .Rbuildignore ├── .gitattributes ├── .github ├── .gitignore └── workflows │ ├── R-CMD-check.yaml │ └── pkgdown.yaml ├── .gitignore ├── CODE_OF_CONDUCT.md ├── CONTRIBUTING.md ├── DESCRIPTION ├── LICENSE ├── NAMESPACE ├── NEWS.md ├── R ├── addins.R ├── install.R ├── lift.R ├── liftr-package.R ├── parsers.R ├── prune.R ├── render_docker.R └── utils.R ├── README.md ├── _pkgdown.yml ├── inst ├── CITATION ├── examples │ ├── bioc-rnaseq.Rmd │ ├── bioc-rnaseq.bib │ ├── liftr-minimal.Rmd │ └── liftr-tidyverse.Rmd ├── logo │ └── logo.R ├── rstudio │ └── addins.dcf └── templates │ ├── base.Rmd │ ├── doc-pandoc.Rmd │ ├── doc-texlive.Rmd │ ├── pkg-bioc.Rmd │ ├── pkg-cran.Rmd │ ├── pkg-remotes.Rmd │ └── system-deps.Rmd ├── liftr.Rproj ├── man ├── addin_lift.Rd ├── addin_lift_render_docker.Rd ├── addin_prune_dangling.Rd ├── addin_prune_image.Rd ├── check_docker_install.Rd ├── check_docker_running.Rd ├── figures │ ├── liftr-workflow.png │ └── logo.png ├── install_docker.Rd ├── lift.Rd ├── 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