├── .build_bingocpp.sh ├── .coveragerc ├── .darglint ├── .github └── workflows │ ├── docs.yml │ ├── examples.yml │ ├── performance_benchmarks.yml │ ├── pylint.yml │ ├── pypi.yml │ └── tests.yml ├── .gitignore ├── .gitmodules ├── .pydocstyle ├── .pylintrc ├── .travis.yml ├── ENVIRONMENT.yml ├── LICENSE.txt ├── MANIFEST.in ├── README.md ├── bingo ├── .idea │ ├── bingo.iml │ ├── misc.xml │ └── modules.xml ├── __init__.py ├── chromosomes │ ├── __init__.py │ ├── chromosome.py │ ├── crossover.py │ ├── generator.py │ ├── multiple_floats.py │ ├── multiple_values.py │ └── mutation.py ├── evaluation │ ├── __init__.py │ ├── evaluation.py │ ├── fitness_function.py │ ├── gradient_mixin.py │ ├── random_subset_evaluation.py │ └── training_data.py ├── evolutionary_algorithms │ ├── __init__.py │ ├── age_fitness.py │ ├── ea_diagnostics.py │ ├── evolutionary_algorithm.py │ ├── generalized_crowding.py │ ├── mu_comma_lambda.py │ └── mu_plus_lambda.py ├── evolutionary_optimizers │ ├── __init__.py │ ├── archipelago.py │ ├── checkpoint_controller.py │ ├── evolutionary_optimizer.py │ ├── fitness_predictor.py │ ├── fitness_predictor_island.py │ ├── island.py │ ├── parallel_archipelago.py │ └── serial_archipelago.py ├── local_optimizers │ ├── __init__.py │ ├── local_opt_fitness.py │ ├── local_optimizer.py │ ├── normalized_marginal_likelihood.py │ ├── scipy_optimizer.py │ └── smcpy_optimizer.py ├── selection │ ├── __init__.py │ ├── age_fitness.py │ ├── deterministic_crowding.py │ ├── generalized_crowding.py │ ├── probabilistic_crowding.py │ ├── probabilistic_tournament.py │ ├── selection.py │ └── tournament.py ├── stats │ ├── __init__.py │ ├── hall_of_fame.py │ └── pareto_front.py ├── symbolic_regression │ ├── __init__.py │ ├── agraph │ │ ├── __init__.py │ │ ├── agraph.py │ │ ├── component_generator.py │ │ ├── crossover.py │ │ ├── evaluation_backend │ │ │ ├── __init__.py │ │ │ ├── evaluation_backend.py │ │ │ └── operator_eval.py │ │ ├── generator.py │ │ ├── mutation.py │ │ ├── onnx_interface.py │ │ ├── operator_definitions.py │ │ ├── simplification_backend │ │ │ ├── __init__.py │ │ │ ├── automatic_simplification.py │ │ │ ├── constant_folding.py │ │ │ ├── expression.py │ │ │ ├── interpreter.py │ │ │ ├── optional_expression_modification.py │ │ │ ├── simplification_backend.py │ │ │ └── simplify.py │ │ ├── string_generation.py │ │ └── string_parsing.py │ ├── atomic_potential_regression.py │ ├── benchmarking │ │ ├── benchmark.py │ │ ├── benchmark_definitions.py │ │ ├── benchmark_suite.py │ │ └── benchmark_test.py │ ├── equation.py │ ├── equation_regressor.py │ ├── explicit_regression.py │ ├── implicit_regression.py │ ├── implicit_regression_schmidt.py │ ├── srbench_interface.py │ └── symbolic_regressor.py ├── util │ ├── __init__.py │ ├── argument_validation.py │ ├── log.py │ └── probability_mass_function.py └── variation │ ├── __init__.py │ ├── add_random_individuals.py │ ├── var_and.py │ ├── var_or.py │ └── variation.py ├── conda_environment.yml ├── doc_requirements.txt ├── docs ├── Makefile ├── make.bat └── source │ ├── _high_level │ ├── data_formatting.rst │ ├── gpsr.rst │ └── sklearn_wrapper.nblink │ ├── _low_level │ ├── physics_fitness.nblink │ ├── tutorial_1.nblink │ ├── tutorial_2.nblink │ ├── tutorial_3.nblink │ └── tutorial_4.nblink │ ├── _static │ ├── agraph.svg │ ├── brackets.svg │ ├── crossover.svg │ ├── download_icon.svg │ ├── gpsr.svg │ ├── mutation.svg │ ├── open_book.svg │ ├── running.svg │ ├── selection.svg │ └── transparent_logo.png │ ├── conf.py │ ├── get_started.nblink │ ├── high_level.rst │ ├── index.rst │ ├── installation.rst │ └── low_level.rst ├── examples ├── .test_examples.sh ├── AgraphExample.py ├── BenchmarkingExample.py ├── OneMaxExample.py ├── SMCExample.py ├── SRParallelArchipelagoExample.py ├── SRSerialArchipelagoExample.py ├── Tutorial_1_One_Max.ipynb ├── Tutorial_2_Zero_Min.ipynb ├── Tutorial_3_Archipelagos_and_Logging.ipynb ├── Tutorial_4_Symbolic_Regression.ipynb ├── Tutorial_5_Benchmarking.ipynb ├── ZeroMinExample.py ├── get_started.ipynb ├── physics_informed_fitness.ipynb └── sklearn_wrapper.ipynb ├── media ├── logo.png ├── usage_example_1.png └── usage_example_2.png ├── pyproject.toml ├── requirements.txt ├── setup.py └── tests ├── .run_tests.sh ├── integration ├── agraph │ ├── test_agraph_eval_simp.py │ └── test_agraph_mutation_and_crossover.py ├── mpitests │ ├── mpitest_parallel_archipelago.py │ ├── mpitest_parallel_archipelago_and_multiprocessing.py │ └── mpitest_util.py ├── test_clo_explicit_regression.py ├── test_clo_optim.py ├── test_fitness_predictor_eval.py ├── test_fitness_predictor_island_evo.py ├── test_island_evo.py ├── test_parallel_archipelago_evo.py ├── test_serial_archipelago_evo.py └── test_smcpy_optimizer.py ├── performance_benchmarking ├── benchmark_data.py ├── continous_local_opt_benchmarks.py ├── evaluation_benchmark.py ├── fitness_benchmark.py ├── island_benchmarks.py ├── parallel_archipelago_benchmarks.py └── performance_benchmarks.py └── unit ├── chromosomes ├── test_chromosome.py ├── test_crossover_mutation_generation.py ├── test_multiple_float_chromosome.py └── test_multiple_value_chromosome.py ├── evaluation ├── test_base_evaluation.py ├── test_fitness_function.py ├── test_gradient_mixin.py ├── test_random_subset_evaluation.py └── test_training_data.py ├── evolutionary_algorithms ├── test_age_fitness_ea.py ├── test_ea_diagnostics.py ├── test_evolutionary_algorithm.py ├── test_generalized_crowding_ea.py ├── test_mu_comma_lambda.py └── test_mu_plus_lambda.py ├── evolutionary_optimizers ├── test_evolutionary_optimizer.py ├── test_fitness_predictor.py ├── test_fitness_predictor_island.py ├── test_island.py ├── test_parallel_archipelago.py └── test_serial_archipelago.py ├── local_optimizers ├── test_local_opt.py ├── test_normalized_marginal_likelihood.py └── test_scipy_optimizer.py ├── selection ├── test_age_fitness.py ├── test_crowding.py ├── test_probabilistic_tournament.py ├── test_selection.py └── test_tournament.py ├── stats ├── test_hall_of_fame.py └── test_pareto_front.py ├── symbolic_regression ├── agraph │ ├── evaluation_backend │ │ ├── test_evaluation_backend.py │ │ └── test_operator_eval.py │ ├── simplification_backend │ │ ├── test_cas_constant_folding.py │ │ ├── test_cas_interpreter.py │ │ ├── test_cas_optional_modifications.py │ │ ├── test_cas_simplification.py │ │ └── test_simplification_backend.py │ ├── test_agraph.py │ ├── test_agraph_component_generator.py │ ├── test_agraph_crossover.py │ ├── test_agraph_generator.py │ ├── test_agraph_mutation.py │ ├── test_onnx_interface.py │ ├── test_string_generation.py │ └── test_string_parsing.py ├── benchmarking │ ├── test_benchmark.py │ ├── test_benchmark_suite.py │ └── test_benchmark_test.py ├── test_atomic_potential_regression.py ├── test_bingocpp.py ├── test_equation.py ├── test_equation_regressor.py ├── test_explicit_regression.py ├── test_implicit_regression.py └── test_symbolic_regressor.py ├── util ├── test_argument_validation.py ├── test_log.py └── test_probability_mass_function.py └── variation ├── test_add_random_individuals.py ├── test_var_and.py ├── test_var_or.py └── test_variation.py /.build_bingocpp.sh: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/nasa/bingo/HEAD/.build_bingocpp.sh -------------------------------------------------------------------------------- /.coveragerc: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/nasa/bingo/HEAD/.coveragerc -------------------------------------------------------------------------------- /.darglint: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/nasa/bingo/HEAD/.darglint -------------------------------------------------------------------------------- /.github/workflows/docs.yml: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/nasa/bingo/HEAD/.github/workflows/docs.yml -------------------------------------------------------------------------------- /.github/workflows/examples.yml: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/nasa/bingo/HEAD/.github/workflows/examples.yml -------------------------------------------------------------------------------- /.github/workflows/performance_benchmarks.yml: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/nasa/bingo/HEAD/.github/workflows/performance_benchmarks.yml -------------------------------------------------------------------------------- /.github/workflows/pylint.yml: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/nasa/bingo/HEAD/.github/workflows/pylint.yml -------------------------------------------------------------------------------- /.github/workflows/pypi.yml: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/nasa/bingo/HEAD/.github/workflows/pypi.yml -------------------------------------------------------------------------------- /.github/workflows/tests.yml: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/nasa/bingo/HEAD/.github/workflows/tests.yml -------------------------------------------------------------------------------- /.gitignore: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/nasa/bingo/HEAD/.gitignore -------------------------------------------------------------------------------- /.gitmodules: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/nasa/bingo/HEAD/.gitmodules -------------------------------------------------------------------------------- /.pydocstyle: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/nasa/bingo/HEAD/.pydocstyle -------------------------------------------------------------------------------- /.pylintrc: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/nasa/bingo/HEAD/.pylintrc -------------------------------------------------------------------------------- /.travis.yml: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/nasa/bingo/HEAD/.travis.yml -------------------------------------------------------------------------------- /ENVIRONMENT.yml: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/nasa/bingo/HEAD/ENVIRONMENT.yml -------------------------------------------------------------------------------- /LICENSE.txt: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/nasa/bingo/HEAD/LICENSE.txt -------------------------------------------------------------------------------- /MANIFEST.in: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/nasa/bingo/HEAD/MANIFEST.in -------------------------------------------------------------------------------- /README.md: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/nasa/bingo/HEAD/README.md -------------------------------------------------------------------------------- /bingo/.idea/bingo.iml: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/nasa/bingo/HEAD/bingo/.idea/bingo.iml -------------------------------------------------------------------------------- /bingo/.idea/misc.xml: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/nasa/bingo/HEAD/bingo/.idea/misc.xml -------------------------------------------------------------------------------- /bingo/.idea/modules.xml: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/nasa/bingo/HEAD/bingo/.idea/modules.xml -------------------------------------------------------------------------------- /bingo/__init__.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/nasa/bingo/HEAD/bingo/__init__.py -------------------------------------------------------------------------------- /bingo/chromosomes/__init__.py: -------------------------------------------------------------------------------- 1 | -------------------------------------------------------------------------------- /bingo/chromosomes/chromosome.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/nasa/bingo/HEAD/bingo/chromosomes/chromosome.py -------------------------------------------------------------------------------- /bingo/chromosomes/crossover.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/nasa/bingo/HEAD/bingo/chromosomes/crossover.py -------------------------------------------------------------------------------- /bingo/chromosomes/generator.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/nasa/bingo/HEAD/bingo/chromosomes/generator.py -------------------------------------------------------------------------------- /bingo/chromosomes/multiple_floats.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/nasa/bingo/HEAD/bingo/chromosomes/multiple_floats.py -------------------------------------------------------------------------------- /bingo/chromosomes/multiple_values.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/nasa/bingo/HEAD/bingo/chromosomes/multiple_values.py -------------------------------------------------------------------------------- /bingo/chromosomes/mutation.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/nasa/bingo/HEAD/bingo/chromosomes/mutation.py -------------------------------------------------------------------------------- /bingo/evaluation/__init__.py: -------------------------------------------------------------------------------- 1 | -------------------------------------------------------------------------------- /bingo/evaluation/evaluation.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/nasa/bingo/HEAD/bingo/evaluation/evaluation.py -------------------------------------------------------------------------------- /bingo/evaluation/fitness_function.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/nasa/bingo/HEAD/bingo/evaluation/fitness_function.py -------------------------------------------------------------------------------- /bingo/evaluation/gradient_mixin.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/nasa/bingo/HEAD/bingo/evaluation/gradient_mixin.py -------------------------------------------------------------------------------- /bingo/evaluation/random_subset_evaluation.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/nasa/bingo/HEAD/bingo/evaluation/random_subset_evaluation.py -------------------------------------------------------------------------------- /bingo/evaluation/training_data.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/nasa/bingo/HEAD/bingo/evaluation/training_data.py -------------------------------------------------------------------------------- /bingo/evolutionary_algorithms/__init__.py: -------------------------------------------------------------------------------- 1 | -------------------------------------------------------------------------------- /bingo/evolutionary_algorithms/age_fitness.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/nasa/bingo/HEAD/bingo/evolutionary_algorithms/age_fitness.py -------------------------------------------------------------------------------- /bingo/evolutionary_algorithms/ea_diagnostics.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/nasa/bingo/HEAD/bingo/evolutionary_algorithms/ea_diagnostics.py -------------------------------------------------------------------------------- /bingo/evolutionary_algorithms/evolutionary_algorithm.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/nasa/bingo/HEAD/bingo/evolutionary_algorithms/evolutionary_algorithm.py -------------------------------------------------------------------------------- /bingo/evolutionary_algorithms/generalized_crowding.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/nasa/bingo/HEAD/bingo/evolutionary_algorithms/generalized_crowding.py -------------------------------------------------------------------------------- /bingo/evolutionary_algorithms/mu_comma_lambda.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/nasa/bingo/HEAD/bingo/evolutionary_algorithms/mu_comma_lambda.py -------------------------------------------------------------------------------- /bingo/evolutionary_algorithms/mu_plus_lambda.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/nasa/bingo/HEAD/bingo/evolutionary_algorithms/mu_plus_lambda.py -------------------------------------------------------------------------------- /bingo/evolutionary_optimizers/__init__.py: -------------------------------------------------------------------------------- 1 | -------------------------------------------------------------------------------- /bingo/evolutionary_optimizers/archipelago.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/nasa/bingo/HEAD/bingo/evolutionary_optimizers/archipelago.py -------------------------------------------------------------------------------- /bingo/evolutionary_optimizers/checkpoint_controller.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/nasa/bingo/HEAD/bingo/evolutionary_optimizers/checkpoint_controller.py -------------------------------------------------------------------------------- /bingo/evolutionary_optimizers/evolutionary_optimizer.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/nasa/bingo/HEAD/bingo/evolutionary_optimizers/evolutionary_optimizer.py -------------------------------------------------------------------------------- /bingo/evolutionary_optimizers/fitness_predictor.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/nasa/bingo/HEAD/bingo/evolutionary_optimizers/fitness_predictor.py -------------------------------------------------------------------------------- /bingo/evolutionary_optimizers/fitness_predictor_island.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/nasa/bingo/HEAD/bingo/evolutionary_optimizers/fitness_predictor_island.py -------------------------------------------------------------------------------- /bingo/evolutionary_optimizers/island.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/nasa/bingo/HEAD/bingo/evolutionary_optimizers/island.py -------------------------------------------------------------------------------- /bingo/evolutionary_optimizers/parallel_archipelago.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/nasa/bingo/HEAD/bingo/evolutionary_optimizers/parallel_archipelago.py -------------------------------------------------------------------------------- /bingo/evolutionary_optimizers/serial_archipelago.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/nasa/bingo/HEAD/bingo/evolutionary_optimizers/serial_archipelago.py -------------------------------------------------------------------------------- /bingo/local_optimizers/__init__.py: -------------------------------------------------------------------------------- 1 | -------------------------------------------------------------------------------- /bingo/local_optimizers/local_opt_fitness.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/nasa/bingo/HEAD/bingo/local_optimizers/local_opt_fitness.py -------------------------------------------------------------------------------- /bingo/local_optimizers/local_optimizer.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/nasa/bingo/HEAD/bingo/local_optimizers/local_optimizer.py -------------------------------------------------------------------------------- /bingo/local_optimizers/normalized_marginal_likelihood.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/nasa/bingo/HEAD/bingo/local_optimizers/normalized_marginal_likelihood.py -------------------------------------------------------------------------------- /bingo/local_optimizers/scipy_optimizer.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/nasa/bingo/HEAD/bingo/local_optimizers/scipy_optimizer.py -------------------------------------------------------------------------------- /bingo/local_optimizers/smcpy_optimizer.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/nasa/bingo/HEAD/bingo/local_optimizers/smcpy_optimizer.py -------------------------------------------------------------------------------- /bingo/selection/__init__.py: -------------------------------------------------------------------------------- 1 | -------------------------------------------------------------------------------- /bingo/selection/age_fitness.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/nasa/bingo/HEAD/bingo/selection/age_fitness.py -------------------------------------------------------------------------------- /bingo/selection/deterministic_crowding.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/nasa/bingo/HEAD/bingo/selection/deterministic_crowding.py -------------------------------------------------------------------------------- /bingo/selection/generalized_crowding.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/nasa/bingo/HEAD/bingo/selection/generalized_crowding.py -------------------------------------------------------------------------------- /bingo/selection/probabilistic_crowding.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/nasa/bingo/HEAD/bingo/selection/probabilistic_crowding.py -------------------------------------------------------------------------------- /bingo/selection/probabilistic_tournament.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/nasa/bingo/HEAD/bingo/selection/probabilistic_tournament.py -------------------------------------------------------------------------------- /bingo/selection/selection.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/nasa/bingo/HEAD/bingo/selection/selection.py -------------------------------------------------------------------------------- /bingo/selection/tournament.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/nasa/bingo/HEAD/bingo/selection/tournament.py -------------------------------------------------------------------------------- /bingo/stats/__init__.py: -------------------------------------------------------------------------------- 1 | -------------------------------------------------------------------------------- /bingo/stats/hall_of_fame.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/nasa/bingo/HEAD/bingo/stats/hall_of_fame.py -------------------------------------------------------------------------------- /bingo/stats/pareto_front.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/nasa/bingo/HEAD/bingo/stats/pareto_front.py -------------------------------------------------------------------------------- /bingo/symbolic_regression/__init__.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/nasa/bingo/HEAD/bingo/symbolic_regression/__init__.py -------------------------------------------------------------------------------- /bingo/symbolic_regression/agraph/__init__.py: -------------------------------------------------------------------------------- 1 | -------------------------------------------------------------------------------- /bingo/symbolic_regression/agraph/agraph.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/nasa/bingo/HEAD/bingo/symbolic_regression/agraph/agraph.py -------------------------------------------------------------------------------- /bingo/symbolic_regression/agraph/component_generator.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/nasa/bingo/HEAD/bingo/symbolic_regression/agraph/component_generator.py -------------------------------------------------------------------------------- /bingo/symbolic_regression/agraph/crossover.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/nasa/bingo/HEAD/bingo/symbolic_regression/agraph/crossover.py -------------------------------------------------------------------------------- /bingo/symbolic_regression/agraph/evaluation_backend/__init__.py: -------------------------------------------------------------------------------- 1 | -------------------------------------------------------------------------------- /bingo/symbolic_regression/agraph/evaluation_backend/evaluation_backend.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/nasa/bingo/HEAD/bingo/symbolic_regression/agraph/evaluation_backend/evaluation_backend.py -------------------------------------------------------------------------------- /bingo/symbolic_regression/agraph/evaluation_backend/operator_eval.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/nasa/bingo/HEAD/bingo/symbolic_regression/agraph/evaluation_backend/operator_eval.py -------------------------------------------------------------------------------- /bingo/symbolic_regression/agraph/generator.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/nasa/bingo/HEAD/bingo/symbolic_regression/agraph/generator.py -------------------------------------------------------------------------------- /bingo/symbolic_regression/agraph/mutation.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/nasa/bingo/HEAD/bingo/symbolic_regression/agraph/mutation.py -------------------------------------------------------------------------------- /bingo/symbolic_regression/agraph/onnx_interface.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/nasa/bingo/HEAD/bingo/symbolic_regression/agraph/onnx_interface.py -------------------------------------------------------------------------------- /bingo/symbolic_regression/agraph/operator_definitions.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/nasa/bingo/HEAD/bingo/symbolic_regression/agraph/operator_definitions.py -------------------------------------------------------------------------------- /bingo/symbolic_regression/agraph/simplification_backend/__init__.py: -------------------------------------------------------------------------------- 1 | -------------------------------------------------------------------------------- /bingo/symbolic_regression/agraph/simplification_backend/automatic_simplification.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/nasa/bingo/HEAD/bingo/symbolic_regression/agraph/simplification_backend/automatic_simplification.py -------------------------------------------------------------------------------- /bingo/symbolic_regression/agraph/simplification_backend/constant_folding.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/nasa/bingo/HEAD/bingo/symbolic_regression/agraph/simplification_backend/constant_folding.py -------------------------------------------------------------------------------- /bingo/symbolic_regression/agraph/simplification_backend/expression.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/nasa/bingo/HEAD/bingo/symbolic_regression/agraph/simplification_backend/expression.py -------------------------------------------------------------------------------- /bingo/symbolic_regression/agraph/simplification_backend/interpreter.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/nasa/bingo/HEAD/bingo/symbolic_regression/agraph/simplification_backend/interpreter.py -------------------------------------------------------------------------------- /bingo/symbolic_regression/agraph/simplification_backend/optional_expression_modification.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/nasa/bingo/HEAD/bingo/symbolic_regression/agraph/simplification_backend/optional_expression_modification.py -------------------------------------------------------------------------------- /bingo/symbolic_regression/agraph/simplification_backend/simplification_backend.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/nasa/bingo/HEAD/bingo/symbolic_regression/agraph/simplification_backend/simplification_backend.py -------------------------------------------------------------------------------- /bingo/symbolic_regression/agraph/simplification_backend/simplify.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/nasa/bingo/HEAD/bingo/symbolic_regression/agraph/simplification_backend/simplify.py -------------------------------------------------------------------------------- /bingo/symbolic_regression/agraph/string_generation.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/nasa/bingo/HEAD/bingo/symbolic_regression/agraph/string_generation.py -------------------------------------------------------------------------------- /bingo/symbolic_regression/agraph/string_parsing.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/nasa/bingo/HEAD/bingo/symbolic_regression/agraph/string_parsing.py -------------------------------------------------------------------------------- /bingo/symbolic_regression/atomic_potential_regression.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/nasa/bingo/HEAD/bingo/symbolic_regression/atomic_potential_regression.py -------------------------------------------------------------------------------- /bingo/symbolic_regression/benchmarking/benchmark.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/nasa/bingo/HEAD/bingo/symbolic_regression/benchmarking/benchmark.py -------------------------------------------------------------------------------- /bingo/symbolic_regression/benchmarking/benchmark_definitions.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/nasa/bingo/HEAD/bingo/symbolic_regression/benchmarking/benchmark_definitions.py -------------------------------------------------------------------------------- /bingo/symbolic_regression/benchmarking/benchmark_suite.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/nasa/bingo/HEAD/bingo/symbolic_regression/benchmarking/benchmark_suite.py -------------------------------------------------------------------------------- /bingo/symbolic_regression/benchmarking/benchmark_test.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/nasa/bingo/HEAD/bingo/symbolic_regression/benchmarking/benchmark_test.py -------------------------------------------------------------------------------- /bingo/symbolic_regression/equation.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/nasa/bingo/HEAD/bingo/symbolic_regression/equation.py -------------------------------------------------------------------------------- /bingo/symbolic_regression/equation_regressor.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/nasa/bingo/HEAD/bingo/symbolic_regression/equation_regressor.py -------------------------------------------------------------------------------- /bingo/symbolic_regression/explicit_regression.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/nasa/bingo/HEAD/bingo/symbolic_regression/explicit_regression.py -------------------------------------------------------------------------------- /bingo/symbolic_regression/implicit_regression.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/nasa/bingo/HEAD/bingo/symbolic_regression/implicit_regression.py -------------------------------------------------------------------------------- /bingo/symbolic_regression/implicit_regression_schmidt.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/nasa/bingo/HEAD/bingo/symbolic_regression/implicit_regression_schmidt.py -------------------------------------------------------------------------------- /bingo/symbolic_regression/srbench_interface.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/nasa/bingo/HEAD/bingo/symbolic_regression/srbench_interface.py -------------------------------------------------------------------------------- /bingo/symbolic_regression/symbolic_regressor.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/nasa/bingo/HEAD/bingo/symbolic_regression/symbolic_regressor.py -------------------------------------------------------------------------------- /bingo/util/__init__.py: -------------------------------------------------------------------------------- 1 | -------------------------------------------------------------------------------- /bingo/util/argument_validation.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/nasa/bingo/HEAD/bingo/util/argument_validation.py -------------------------------------------------------------------------------- /bingo/util/log.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/nasa/bingo/HEAD/bingo/util/log.py -------------------------------------------------------------------------------- /bingo/util/probability_mass_function.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/nasa/bingo/HEAD/bingo/util/probability_mass_function.py -------------------------------------------------------------------------------- /bingo/variation/__init__.py: -------------------------------------------------------------------------------- 1 | -------------------------------------------------------------------------------- /bingo/variation/add_random_individuals.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/nasa/bingo/HEAD/bingo/variation/add_random_individuals.py -------------------------------------------------------------------------------- /bingo/variation/var_and.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/nasa/bingo/HEAD/bingo/variation/var_and.py -------------------------------------------------------------------------------- /bingo/variation/var_or.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/nasa/bingo/HEAD/bingo/variation/var_or.py -------------------------------------------------------------------------------- /bingo/variation/variation.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/nasa/bingo/HEAD/bingo/variation/variation.py -------------------------------------------------------------------------------- /conda_environment.yml: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/nasa/bingo/HEAD/conda_environment.yml -------------------------------------------------------------------------------- /doc_requirements.txt: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/nasa/bingo/HEAD/doc_requirements.txt -------------------------------------------------------------------------------- /docs/Makefile: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/nasa/bingo/HEAD/docs/Makefile -------------------------------------------------------------------------------- /docs/make.bat: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/nasa/bingo/HEAD/docs/make.bat -------------------------------------------------------------------------------- /docs/source/_high_level/data_formatting.rst: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/nasa/bingo/HEAD/docs/source/_high_level/data_formatting.rst -------------------------------------------------------------------------------- /docs/source/_high_level/gpsr.rst: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/nasa/bingo/HEAD/docs/source/_high_level/gpsr.rst -------------------------------------------------------------------------------- /docs/source/_high_level/sklearn_wrapper.nblink: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/nasa/bingo/HEAD/docs/source/_high_level/sklearn_wrapper.nblink -------------------------------------------------------------------------------- /docs/source/_low_level/physics_fitness.nblink: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/nasa/bingo/HEAD/docs/source/_low_level/physics_fitness.nblink -------------------------------------------------------------------------------- /docs/source/_low_level/tutorial_1.nblink: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/nasa/bingo/HEAD/docs/source/_low_level/tutorial_1.nblink -------------------------------------------------------------------------------- /docs/source/_low_level/tutorial_2.nblink: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/nasa/bingo/HEAD/docs/source/_low_level/tutorial_2.nblink -------------------------------------------------------------------------------- /docs/source/_low_level/tutorial_3.nblink: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/nasa/bingo/HEAD/docs/source/_low_level/tutorial_3.nblink -------------------------------------------------------------------------------- /docs/source/_low_level/tutorial_4.nblink: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/nasa/bingo/HEAD/docs/source/_low_level/tutorial_4.nblink -------------------------------------------------------------------------------- /docs/source/_static/agraph.svg: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/nasa/bingo/HEAD/docs/source/_static/agraph.svg -------------------------------------------------------------------------------- /docs/source/_static/brackets.svg: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/nasa/bingo/HEAD/docs/source/_static/brackets.svg -------------------------------------------------------------------------------- /docs/source/_static/crossover.svg: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/nasa/bingo/HEAD/docs/source/_static/crossover.svg -------------------------------------------------------------------------------- /docs/source/_static/download_icon.svg: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/nasa/bingo/HEAD/docs/source/_static/download_icon.svg -------------------------------------------------------------------------------- /docs/source/_static/gpsr.svg: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/nasa/bingo/HEAD/docs/source/_static/gpsr.svg -------------------------------------------------------------------------------- /docs/source/_static/mutation.svg: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/nasa/bingo/HEAD/docs/source/_static/mutation.svg -------------------------------------------------------------------------------- /docs/source/_static/open_book.svg: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/nasa/bingo/HEAD/docs/source/_static/open_book.svg -------------------------------------------------------------------------------- /docs/source/_static/running.svg: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/nasa/bingo/HEAD/docs/source/_static/running.svg -------------------------------------------------------------------------------- /docs/source/_static/selection.svg: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/nasa/bingo/HEAD/docs/source/_static/selection.svg -------------------------------------------------------------------------------- /docs/source/_static/transparent_logo.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/nasa/bingo/HEAD/docs/source/_static/transparent_logo.png -------------------------------------------------------------------------------- /docs/source/conf.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/nasa/bingo/HEAD/docs/source/conf.py -------------------------------------------------------------------------------- /docs/source/get_started.nblink: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/nasa/bingo/HEAD/docs/source/get_started.nblink -------------------------------------------------------------------------------- /docs/source/high_level.rst: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/nasa/bingo/HEAD/docs/source/high_level.rst -------------------------------------------------------------------------------- /docs/source/index.rst: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/nasa/bingo/HEAD/docs/source/index.rst -------------------------------------------------------------------------------- /docs/source/installation.rst: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/nasa/bingo/HEAD/docs/source/installation.rst -------------------------------------------------------------------------------- /docs/source/low_level.rst: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/nasa/bingo/HEAD/docs/source/low_level.rst -------------------------------------------------------------------------------- /examples/.test_examples.sh: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/nasa/bingo/HEAD/examples/.test_examples.sh -------------------------------------------------------------------------------- /examples/AgraphExample.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/nasa/bingo/HEAD/examples/AgraphExample.py -------------------------------------------------------------------------------- /examples/BenchmarkingExample.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/nasa/bingo/HEAD/examples/BenchmarkingExample.py -------------------------------------------------------------------------------- /examples/OneMaxExample.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/nasa/bingo/HEAD/examples/OneMaxExample.py -------------------------------------------------------------------------------- /examples/SMCExample.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/nasa/bingo/HEAD/examples/SMCExample.py -------------------------------------------------------------------------------- /examples/SRParallelArchipelagoExample.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/nasa/bingo/HEAD/examples/SRParallelArchipelagoExample.py -------------------------------------------------------------------------------- /examples/SRSerialArchipelagoExample.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/nasa/bingo/HEAD/examples/SRSerialArchipelagoExample.py -------------------------------------------------------------------------------- /examples/Tutorial_1_One_Max.ipynb: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/nasa/bingo/HEAD/examples/Tutorial_1_One_Max.ipynb -------------------------------------------------------------------------------- /examples/Tutorial_2_Zero_Min.ipynb: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/nasa/bingo/HEAD/examples/Tutorial_2_Zero_Min.ipynb -------------------------------------------------------------------------------- /examples/Tutorial_3_Archipelagos_and_Logging.ipynb: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/nasa/bingo/HEAD/examples/Tutorial_3_Archipelagos_and_Logging.ipynb -------------------------------------------------------------------------------- /examples/Tutorial_4_Symbolic_Regression.ipynb: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/nasa/bingo/HEAD/examples/Tutorial_4_Symbolic_Regression.ipynb -------------------------------------------------------------------------------- /examples/Tutorial_5_Benchmarking.ipynb: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/nasa/bingo/HEAD/examples/Tutorial_5_Benchmarking.ipynb -------------------------------------------------------------------------------- /examples/ZeroMinExample.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/nasa/bingo/HEAD/examples/ZeroMinExample.py -------------------------------------------------------------------------------- /examples/get_started.ipynb: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/nasa/bingo/HEAD/examples/get_started.ipynb -------------------------------------------------------------------------------- /examples/physics_informed_fitness.ipynb: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/nasa/bingo/HEAD/examples/physics_informed_fitness.ipynb -------------------------------------------------------------------------------- /examples/sklearn_wrapper.ipynb: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/nasa/bingo/HEAD/examples/sklearn_wrapper.ipynb -------------------------------------------------------------------------------- /media/logo.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/nasa/bingo/HEAD/media/logo.png -------------------------------------------------------------------------------- /media/usage_example_1.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/nasa/bingo/HEAD/media/usage_example_1.png -------------------------------------------------------------------------------- /media/usage_example_2.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/nasa/bingo/HEAD/media/usage_example_2.png -------------------------------------------------------------------------------- /pyproject.toml: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/nasa/bingo/HEAD/pyproject.toml -------------------------------------------------------------------------------- /requirements.txt: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/nasa/bingo/HEAD/requirements.txt -------------------------------------------------------------------------------- /setup.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/nasa/bingo/HEAD/setup.py -------------------------------------------------------------------------------- /tests/.run_tests.sh: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/nasa/bingo/HEAD/tests/.run_tests.sh -------------------------------------------------------------------------------- /tests/integration/agraph/test_agraph_eval_simp.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/nasa/bingo/HEAD/tests/integration/agraph/test_agraph_eval_simp.py -------------------------------------------------------------------------------- /tests/integration/agraph/test_agraph_mutation_and_crossover.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/nasa/bingo/HEAD/tests/integration/agraph/test_agraph_mutation_and_crossover.py -------------------------------------------------------------------------------- /tests/integration/mpitests/mpitest_parallel_archipelago.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/nasa/bingo/HEAD/tests/integration/mpitests/mpitest_parallel_archipelago.py -------------------------------------------------------------------------------- /tests/integration/mpitests/mpitest_parallel_archipelago_and_multiprocessing.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/nasa/bingo/HEAD/tests/integration/mpitests/mpitest_parallel_archipelago_and_multiprocessing.py -------------------------------------------------------------------------------- /tests/integration/mpitests/mpitest_util.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/nasa/bingo/HEAD/tests/integration/mpitests/mpitest_util.py -------------------------------------------------------------------------------- /tests/integration/test_clo_explicit_regression.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/nasa/bingo/HEAD/tests/integration/test_clo_explicit_regression.py -------------------------------------------------------------------------------- /tests/integration/test_clo_optim.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/nasa/bingo/HEAD/tests/integration/test_clo_optim.py -------------------------------------------------------------------------------- /tests/integration/test_fitness_predictor_eval.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/nasa/bingo/HEAD/tests/integration/test_fitness_predictor_eval.py -------------------------------------------------------------------------------- /tests/integration/test_fitness_predictor_island_evo.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/nasa/bingo/HEAD/tests/integration/test_fitness_predictor_island_evo.py -------------------------------------------------------------------------------- /tests/integration/test_island_evo.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/nasa/bingo/HEAD/tests/integration/test_island_evo.py -------------------------------------------------------------------------------- /tests/integration/test_parallel_archipelago_evo.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/nasa/bingo/HEAD/tests/integration/test_parallel_archipelago_evo.py -------------------------------------------------------------------------------- /tests/integration/test_serial_archipelago_evo.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/nasa/bingo/HEAD/tests/integration/test_serial_archipelago_evo.py -------------------------------------------------------------------------------- /tests/integration/test_smcpy_optimizer.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/nasa/bingo/HEAD/tests/integration/test_smcpy_optimizer.py -------------------------------------------------------------------------------- /tests/performance_benchmarking/benchmark_data.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/nasa/bingo/HEAD/tests/performance_benchmarking/benchmark_data.py -------------------------------------------------------------------------------- /tests/performance_benchmarking/continous_local_opt_benchmarks.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/nasa/bingo/HEAD/tests/performance_benchmarking/continous_local_opt_benchmarks.py -------------------------------------------------------------------------------- /tests/performance_benchmarking/evaluation_benchmark.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/nasa/bingo/HEAD/tests/performance_benchmarking/evaluation_benchmark.py -------------------------------------------------------------------------------- /tests/performance_benchmarking/fitness_benchmark.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/nasa/bingo/HEAD/tests/performance_benchmarking/fitness_benchmark.py -------------------------------------------------------------------------------- /tests/performance_benchmarking/island_benchmarks.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/nasa/bingo/HEAD/tests/performance_benchmarking/island_benchmarks.py -------------------------------------------------------------------------------- /tests/performance_benchmarking/parallel_archipelago_benchmarks.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/nasa/bingo/HEAD/tests/performance_benchmarking/parallel_archipelago_benchmarks.py -------------------------------------------------------------------------------- /tests/performance_benchmarking/performance_benchmarks.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/nasa/bingo/HEAD/tests/performance_benchmarking/performance_benchmarks.py -------------------------------------------------------------------------------- /tests/unit/chromosomes/test_chromosome.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/nasa/bingo/HEAD/tests/unit/chromosomes/test_chromosome.py -------------------------------------------------------------------------------- /tests/unit/chromosomes/test_crossover_mutation_generation.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/nasa/bingo/HEAD/tests/unit/chromosomes/test_crossover_mutation_generation.py -------------------------------------------------------------------------------- /tests/unit/chromosomes/test_multiple_float_chromosome.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/nasa/bingo/HEAD/tests/unit/chromosomes/test_multiple_float_chromosome.py -------------------------------------------------------------------------------- /tests/unit/chromosomes/test_multiple_value_chromosome.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/nasa/bingo/HEAD/tests/unit/chromosomes/test_multiple_value_chromosome.py -------------------------------------------------------------------------------- /tests/unit/evaluation/test_base_evaluation.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/nasa/bingo/HEAD/tests/unit/evaluation/test_base_evaluation.py -------------------------------------------------------------------------------- /tests/unit/evaluation/test_fitness_function.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/nasa/bingo/HEAD/tests/unit/evaluation/test_fitness_function.py -------------------------------------------------------------------------------- /tests/unit/evaluation/test_gradient_mixin.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/nasa/bingo/HEAD/tests/unit/evaluation/test_gradient_mixin.py -------------------------------------------------------------------------------- /tests/unit/evaluation/test_random_subset_evaluation.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/nasa/bingo/HEAD/tests/unit/evaluation/test_random_subset_evaluation.py -------------------------------------------------------------------------------- /tests/unit/evaluation/test_training_data.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/nasa/bingo/HEAD/tests/unit/evaluation/test_training_data.py -------------------------------------------------------------------------------- /tests/unit/evolutionary_algorithms/test_age_fitness_ea.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/nasa/bingo/HEAD/tests/unit/evolutionary_algorithms/test_age_fitness_ea.py -------------------------------------------------------------------------------- /tests/unit/evolutionary_algorithms/test_ea_diagnostics.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/nasa/bingo/HEAD/tests/unit/evolutionary_algorithms/test_ea_diagnostics.py -------------------------------------------------------------------------------- /tests/unit/evolutionary_algorithms/test_evolutionary_algorithm.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/nasa/bingo/HEAD/tests/unit/evolutionary_algorithms/test_evolutionary_algorithm.py -------------------------------------------------------------------------------- /tests/unit/evolutionary_algorithms/test_generalized_crowding_ea.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/nasa/bingo/HEAD/tests/unit/evolutionary_algorithms/test_generalized_crowding_ea.py -------------------------------------------------------------------------------- /tests/unit/evolutionary_algorithms/test_mu_comma_lambda.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/nasa/bingo/HEAD/tests/unit/evolutionary_algorithms/test_mu_comma_lambda.py -------------------------------------------------------------------------------- /tests/unit/evolutionary_algorithms/test_mu_plus_lambda.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/nasa/bingo/HEAD/tests/unit/evolutionary_algorithms/test_mu_plus_lambda.py -------------------------------------------------------------------------------- /tests/unit/evolutionary_optimizers/test_evolutionary_optimizer.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/nasa/bingo/HEAD/tests/unit/evolutionary_optimizers/test_evolutionary_optimizer.py -------------------------------------------------------------------------------- /tests/unit/evolutionary_optimizers/test_fitness_predictor.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/nasa/bingo/HEAD/tests/unit/evolutionary_optimizers/test_fitness_predictor.py -------------------------------------------------------------------------------- /tests/unit/evolutionary_optimizers/test_fitness_predictor_island.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/nasa/bingo/HEAD/tests/unit/evolutionary_optimizers/test_fitness_predictor_island.py -------------------------------------------------------------------------------- /tests/unit/evolutionary_optimizers/test_island.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/nasa/bingo/HEAD/tests/unit/evolutionary_optimizers/test_island.py -------------------------------------------------------------------------------- /tests/unit/evolutionary_optimizers/test_parallel_archipelago.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/nasa/bingo/HEAD/tests/unit/evolutionary_optimizers/test_parallel_archipelago.py -------------------------------------------------------------------------------- /tests/unit/evolutionary_optimizers/test_serial_archipelago.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/nasa/bingo/HEAD/tests/unit/evolutionary_optimizers/test_serial_archipelago.py -------------------------------------------------------------------------------- /tests/unit/local_optimizers/test_local_opt.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/nasa/bingo/HEAD/tests/unit/local_optimizers/test_local_opt.py -------------------------------------------------------------------------------- /tests/unit/local_optimizers/test_normalized_marginal_likelihood.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/nasa/bingo/HEAD/tests/unit/local_optimizers/test_normalized_marginal_likelihood.py -------------------------------------------------------------------------------- /tests/unit/local_optimizers/test_scipy_optimizer.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/nasa/bingo/HEAD/tests/unit/local_optimizers/test_scipy_optimizer.py -------------------------------------------------------------------------------- /tests/unit/selection/test_age_fitness.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/nasa/bingo/HEAD/tests/unit/selection/test_age_fitness.py -------------------------------------------------------------------------------- /tests/unit/selection/test_crowding.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/nasa/bingo/HEAD/tests/unit/selection/test_crowding.py -------------------------------------------------------------------------------- /tests/unit/selection/test_probabilistic_tournament.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/nasa/bingo/HEAD/tests/unit/selection/test_probabilistic_tournament.py -------------------------------------------------------------------------------- /tests/unit/selection/test_selection.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/nasa/bingo/HEAD/tests/unit/selection/test_selection.py -------------------------------------------------------------------------------- /tests/unit/selection/test_tournament.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/nasa/bingo/HEAD/tests/unit/selection/test_tournament.py -------------------------------------------------------------------------------- /tests/unit/stats/test_hall_of_fame.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/nasa/bingo/HEAD/tests/unit/stats/test_hall_of_fame.py -------------------------------------------------------------------------------- /tests/unit/stats/test_pareto_front.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/nasa/bingo/HEAD/tests/unit/stats/test_pareto_front.py -------------------------------------------------------------------------------- /tests/unit/symbolic_regression/agraph/evaluation_backend/test_evaluation_backend.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/nasa/bingo/HEAD/tests/unit/symbolic_regression/agraph/evaluation_backend/test_evaluation_backend.py -------------------------------------------------------------------------------- /tests/unit/symbolic_regression/agraph/evaluation_backend/test_operator_eval.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/nasa/bingo/HEAD/tests/unit/symbolic_regression/agraph/evaluation_backend/test_operator_eval.py -------------------------------------------------------------------------------- /tests/unit/symbolic_regression/agraph/simplification_backend/test_cas_constant_folding.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/nasa/bingo/HEAD/tests/unit/symbolic_regression/agraph/simplification_backend/test_cas_constant_folding.py -------------------------------------------------------------------------------- /tests/unit/symbolic_regression/agraph/simplification_backend/test_cas_interpreter.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/nasa/bingo/HEAD/tests/unit/symbolic_regression/agraph/simplification_backend/test_cas_interpreter.py -------------------------------------------------------------------------------- /tests/unit/symbolic_regression/agraph/simplification_backend/test_cas_optional_modifications.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/nasa/bingo/HEAD/tests/unit/symbolic_regression/agraph/simplification_backend/test_cas_optional_modifications.py -------------------------------------------------------------------------------- /tests/unit/symbolic_regression/agraph/simplification_backend/test_cas_simplification.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/nasa/bingo/HEAD/tests/unit/symbolic_regression/agraph/simplification_backend/test_cas_simplification.py -------------------------------------------------------------------------------- /tests/unit/symbolic_regression/agraph/simplification_backend/test_simplification_backend.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/nasa/bingo/HEAD/tests/unit/symbolic_regression/agraph/simplification_backend/test_simplification_backend.py -------------------------------------------------------------------------------- /tests/unit/symbolic_regression/agraph/test_agraph.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/nasa/bingo/HEAD/tests/unit/symbolic_regression/agraph/test_agraph.py -------------------------------------------------------------------------------- /tests/unit/symbolic_regression/agraph/test_agraph_component_generator.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/nasa/bingo/HEAD/tests/unit/symbolic_regression/agraph/test_agraph_component_generator.py -------------------------------------------------------------------------------- /tests/unit/symbolic_regression/agraph/test_agraph_crossover.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/nasa/bingo/HEAD/tests/unit/symbolic_regression/agraph/test_agraph_crossover.py -------------------------------------------------------------------------------- /tests/unit/symbolic_regression/agraph/test_agraph_generator.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/nasa/bingo/HEAD/tests/unit/symbolic_regression/agraph/test_agraph_generator.py -------------------------------------------------------------------------------- /tests/unit/symbolic_regression/agraph/test_agraph_mutation.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/nasa/bingo/HEAD/tests/unit/symbolic_regression/agraph/test_agraph_mutation.py -------------------------------------------------------------------------------- /tests/unit/symbolic_regression/agraph/test_onnx_interface.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/nasa/bingo/HEAD/tests/unit/symbolic_regression/agraph/test_onnx_interface.py -------------------------------------------------------------------------------- /tests/unit/symbolic_regression/agraph/test_string_generation.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/nasa/bingo/HEAD/tests/unit/symbolic_regression/agraph/test_string_generation.py -------------------------------------------------------------------------------- /tests/unit/symbolic_regression/agraph/test_string_parsing.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/nasa/bingo/HEAD/tests/unit/symbolic_regression/agraph/test_string_parsing.py -------------------------------------------------------------------------------- /tests/unit/symbolic_regression/benchmarking/test_benchmark.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/nasa/bingo/HEAD/tests/unit/symbolic_regression/benchmarking/test_benchmark.py -------------------------------------------------------------------------------- /tests/unit/symbolic_regression/benchmarking/test_benchmark_suite.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/nasa/bingo/HEAD/tests/unit/symbolic_regression/benchmarking/test_benchmark_suite.py -------------------------------------------------------------------------------- /tests/unit/symbolic_regression/benchmarking/test_benchmark_test.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/nasa/bingo/HEAD/tests/unit/symbolic_regression/benchmarking/test_benchmark_test.py -------------------------------------------------------------------------------- /tests/unit/symbolic_regression/test_atomic_potential_regression.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/nasa/bingo/HEAD/tests/unit/symbolic_regression/test_atomic_potential_regression.py -------------------------------------------------------------------------------- /tests/unit/symbolic_regression/test_bingocpp.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/nasa/bingo/HEAD/tests/unit/symbolic_regression/test_bingocpp.py -------------------------------------------------------------------------------- /tests/unit/symbolic_regression/test_equation.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/nasa/bingo/HEAD/tests/unit/symbolic_regression/test_equation.py -------------------------------------------------------------------------------- /tests/unit/symbolic_regression/test_equation_regressor.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/nasa/bingo/HEAD/tests/unit/symbolic_regression/test_equation_regressor.py -------------------------------------------------------------------------------- /tests/unit/symbolic_regression/test_explicit_regression.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/nasa/bingo/HEAD/tests/unit/symbolic_regression/test_explicit_regression.py -------------------------------------------------------------------------------- /tests/unit/symbolic_regression/test_implicit_regression.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/nasa/bingo/HEAD/tests/unit/symbolic_regression/test_implicit_regression.py -------------------------------------------------------------------------------- /tests/unit/symbolic_regression/test_symbolic_regressor.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/nasa/bingo/HEAD/tests/unit/symbolic_regression/test_symbolic_regressor.py -------------------------------------------------------------------------------- /tests/unit/util/test_argument_validation.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/nasa/bingo/HEAD/tests/unit/util/test_argument_validation.py -------------------------------------------------------------------------------- /tests/unit/util/test_log.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/nasa/bingo/HEAD/tests/unit/util/test_log.py -------------------------------------------------------------------------------- /tests/unit/util/test_probability_mass_function.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/nasa/bingo/HEAD/tests/unit/util/test_probability_mass_function.py -------------------------------------------------------------------------------- /tests/unit/variation/test_add_random_individuals.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/nasa/bingo/HEAD/tests/unit/variation/test_add_random_individuals.py -------------------------------------------------------------------------------- /tests/unit/variation/test_var_and.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/nasa/bingo/HEAD/tests/unit/variation/test_var_and.py -------------------------------------------------------------------------------- /tests/unit/variation/test_var_or.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/nasa/bingo/HEAD/tests/unit/variation/test_var_or.py -------------------------------------------------------------------------------- /tests/unit/variation/test_variation.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/nasa/bingo/HEAD/tests/unit/variation/test_variation.py --------------------------------------------------------------------------------