├── doc
├── html
│ ├── doc.png
│ ├── bc_s.png
│ ├── bdwn.png
│ ├── nav_f.png
│ ├── nav_g.png
│ ├── nav_h.png
│ ├── open.png
│ ├── tab_a.png
│ ├── tab_b.png
│ ├── tab_h.png
│ ├── tab_s.png
│ ├── classCos.png
│ ├── classExp.png
│ ├── classLog.png
│ ├── classSin.png
│ ├── closed.png
│ ├── doxygen.png
│ ├── splitbar.png
│ ├── sync_off.png
│ ├── sync_on.png
│ ├── arrowdown.png
│ ├── arrowright.png
│ ├── classPower.png
│ ├── classSqrt.png
│ ├── folderopen.png
│ ├── classAbsolute.png
│ ├── classAddition.png
│ ├── classC__Load.png
│ ├── classDivision.png
│ ├── classX__Load.png
│ ├── folderclosed.png
│ ├── search
│ │ ├── close.png
│ │ ├── mag_sel.png
│ │ ├── search_l.png
│ │ ├── search_m.png
│ │ ├── search_r.png
│ │ ├── all_1.js
│ │ ├── classes_9.js
│ │ ├── files_3.js
│ │ ├── pages_0.js
│ │ ├── classes_c.js
│ │ ├── classes_2.js
│ │ ├── classes_b.js
│ │ ├── files_1.js
│ │ ├── classes_4.js
│ │ ├── classes_7.js
│ │ ├── files_0.js
│ │ ├── files_2.js
│ │ ├── variables_5.js
│ │ ├── all_11.js
│ │ ├── functions_e.js
│ │ ├── classes_1.js
│ │ ├── all_13.js
│ │ ├── classes_6.js
│ │ ├── variables_1.js
│ │ ├── variables_c.js
│ │ ├── functions_a.js
│ │ ├── variables_4.js
│ │ ├── variables_2.js
│ │ ├── functions_8.js
│ │ ├── functions_d.js
│ │ ├── variables_8.js
│ │ ├── classes_3.js
│ │ ├── classes_8.js
│ │ ├── all_c.js
│ │ ├── all_10.js
│ │ ├── classes_5.js
│ │ ├── variables_b.js
│ │ ├── variables_9.js
│ │ ├── functions_6.js
│ │ ├── functions_9.js
│ │ ├── classes_a.js
│ │ ├── all_12.js
│ │ ├── functions_7.js
│ │ ├── classes_0.js
│ │ ├── all_8.js
│ │ ├── variables_a.js
│ │ ├── variables_0.js
│ │ ├── functions_5.js
│ │ ├── variables_3.js
│ │ ├── all_9.js
│ │ ├── nomatches.html
│ │ ├── variables_7.js
│ │ ├── searchdata.js
│ │ ├── all_f.js
│ │ ├── functions_0.js
│ │ ├── functions_1.js
│ │ ├── all_7.js
│ │ ├── all_5.js
│ │ ├── functions_c.js
│ │ ├── functions_b.js
│ │ ├── all_2.js
│ │ ├── all_b.js
│ │ ├── all_d.js
│ │ ├── variables_6.js
│ │ ├── all_a.js
│ │ ├── all_0.html
│ │ ├── all_1.html
│ │ ├── all_10.html
│ │ ├── all_11.html
│ │ ├── all_12.html
│ │ ├── all_13.html
│ │ ├── all_2.html
│ │ ├── all_3.html
│ │ ├── all_4.html
│ │ ├── all_5.html
│ │ ├── all_6.html
│ │ ├── all_7.html
│ │ ├── all_8.html
│ │ ├── all_9.html
│ │ ├── all_a.html
│ │ ├── all_b.html
│ │ ├── all_c.html
│ │ ├── all_d.html
│ │ ├── all_e.html
│ │ ├── all_f.html
│ │ ├── classes_0.html
│ │ ├── classes_1.html
│ │ ├── classes_2.html
│ │ ├── classes_3.html
│ │ ├── classes_4.html
│ │ ├── classes_5.html
│ │ ├── classes_6.html
│ │ ├── classes_7.html
│ │ ├── classes_8.html
│ │ ├── classes_9.html
│ │ ├── classes_a.html
│ │ ├── classes_b.html
│ │ ├── classes_c.html
│ │ ├── files_0.html
│ │ ├── files_1.html
│ │ ├── files_2.html
│ │ ├── files_3.html
│ │ ├── pages_0.html
│ │ ├── functions_0.html
│ │ ├── functions_1.html
│ │ ├── functions_2.html
│ │ ├── functions_3.html
│ │ ├── functions_4.html
│ │ ├── functions_5.html
│ │ ├── functions_6.html
│ │ ├── functions_7.html
│ │ ├── functions_8.html
│ │ ├── functions_9.html
│ │ ├── functions_a.html
│ │ ├── functions_b.html
│ │ ├── functions_c.html
│ │ ├── functions_d.html
│ │ ├── functions_e.html
│ │ ├── variables_0.html
│ │ ├── variables_1.html
│ │ ├── variables_2.html
│ │ ├── variables_3.html
│ │ ├── variables_4.html
│ │ ├── variables_5.html
│ │ ├── variables_6.html
│ │ ├── variables_7.html
│ │ ├── variables_8.html
│ │ ├── variables_9.html
│ │ ├── variables_a.html
│ │ ├── variables_b.html
│ │ ├── variables_c.html
│ │ ├── all_e.js
│ │ ├── all_0.js
│ │ ├── functions_2.js
│ │ ├── all_3.js
│ │ ├── functions_3.js
│ │ ├── all_4.js
│ │ └── functions_4.js
│ ├── classOperation.png
│ ├── classSubtraction.png
│ ├── structTrainingData.png
│ ├── classMultiplication.png
│ ├── structFitnessMetric.png
│ ├── structImplicitRegression.png
│ ├── structStandardRegression.png
│ ├── structExplicitTrainingData.png
│ ├── structImplicitTrainingData.png
│ └── tabs.css
└── latex
│ ├── classCos.pdf
│ ├── classExp.pdf
│ ├── classLog.pdf
│ ├── classSin.pdf
│ ├── classSqrt.pdf
│ ├── classC__Load.pdf
│ ├── classPower.pdf
│ ├── classX__Load.pdf
│ ├── classAbsolute.pdf
│ ├── classAddition.pdf
│ ├── classDivision.pdf
│ ├── classOperation.pdf
│ ├── classSubtraction.pdf
│ ├── classMultiplication.pdf
│ ├── structFitnessMetric.pdf
│ ├── structTrainingData.pdf
│ ├── structImplicitRegression.pdf
│ ├── structStandardRegression.pdf
│ ├── structExplicitTrainingData.pdf
│ ├── structImplicitTrainingData.pdf
│ ├── dir_68267d1309a1af8e8297ef4c3efbcdba.tex
│ ├── dir_d44c64559bbebec7f509842c48db8b23.tex
│ ├── Makefile
│ ├── dir_dcbc573d067b13a200a39ad3adabc01a.tex
│ ├── training__data_8h.tex
│ ├── graph__manip_8h.tex
│ ├── fitness__metric_8h.tex
│ ├── files.tex
│ ├── classOperatorInterface.tex
│ └── hierarchy.tex
├── media
└── logo.png
├── .astylerc
├── .gitmodules
├── tests
├── test_main.cpp
├── utility_function_tests.cpp
└── testing_utils.h
├── .gitignore
├── include
├── bingocpp
│ ├── version.h
│ ├── version.h.in
│ ├── agraph
│ │ ├── simplification_backend
│ │ │ ├── template.h
│ │ │ ├── constant_expressions.h
│ │ │ └── simplification_backend.h
│ │ ├── constants.h
│ │ └── evaluation_backend
│ │ │ └── operator_eval.h
│ ├── gradient_mixin.h
│ └── training_data.h
├── benchmarking
│ ├── benchmark_logging.h
│ ├── benchmark_data.h
│ ├── benchmark_logging.cpp
│ └── benchmark_data.cpp
└── python
│ ├── py_equation.h
│ ├── py_gradient_mixin.h
│ └── py_fitness_function.h
├── cmake
├── Colors.cmake
└── ConfigSafeGuards.cmake
├── __init__.py
├── src
├── gradient_mixin.cpp
├── explicit_regression.cpp
├── agraph
│ └── simplification_backend
│ │ └── simplification_backend.cpp
└── implicit_regression.cpp
├── .travis.yml
├── app
├── fitness_function_pymodule.cpp
├── test-agraph-consts.csv
├── simplification_backend_pymodule.cpp
├── evaluation_backend_pymodule.cpp
├── bingocpp_pymodule.cpp
├── utils_pymodule.cpp
└── fitness_benchmarks.cpp
└── depricated
├── fitness_metric.cpp
└── acyclic_graph_nodes.h
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6 |
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5 | ];
6 |
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5 | ];
6 |
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4 | ];
5 |
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3 | ['simple_5fstack',['simple_stack',['../classAcyclicGraph.html#acea3997a10f2fe2acc6226f629413feb',1,'AcyclicGraph']]],
4 | ['stack',['stack',['../classAcyclicGraph.html#a0289993135a2d37ae5eaf5701801500f',1,'AcyclicGraph']]]
5 | ];
6 |
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1 | --suffix=none
2 | --delete-empty-lines
3 | --style=google
4 | --indent=spaces=2
5 | --attach-namespaces
6 | --indent-switches
7 | --indent-classes
8 | --break-blocks=all
9 | --pad-oper
10 | --pad-header
11 | --add-braces
12 | --convert-tabs
13 | --max-code-length=80
14 |
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3 | ['latexstring',['latexstring',['../classAcyclicGraph.html#a9534cfd26946835e4190bfa722856f56',1,'AcyclicGraph']]],
4 | ['load',['load',['../classAcyclicGraphManipulator.html#af84d3a060598f93d6b0752e99d7df019',1,'AcyclicGraphManipulator']]]
5 | ];
6 |
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4 | ['optimize_5fconstants',['optimize_constants',['../structFitnessMetric.html#ae4e27aefef6b54dddd6052bd80d37665',1,'FitnessMetric']]]
5 | ];
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3 | ['sin',['Sin',['../classSin.html',1,'']]],
4 | ['sqrt',['Sqrt',['../classSqrt.html',1,'']]],
5 | ['standardregression',['StandardRegression',['../structStandardRegression.html',1,'']]],
6 | ['subtraction',['Subtraction',['../classSubtraction.html',1,'']]]
7 | ];
8 |
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1 | var searchData=
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4 | ['x_5fload',['X_Load',['../classX__Load.html',1,'']]]
5 | ];
6 |
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5 | ];
6 |
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/.gitmodules:
--------------------------------------------------------------------------------
1 | [submodule "external/googletest"]
2 | path = external/googletest
3 | url = https://github.com/google/googletest
4 | [submodule "external/pybind"]
5 | path = external/pybind
6 | url = https://github.com/pybind/pybind11.git
7 | [submodule "external/eigen"]
8 | path = external/eigen
9 | url = https://github.com/eigenteam/eigen-git-mirror.git
10 |
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1 | var searchData=
2 | [
3 | ['absolute',['Absolute',['../classAbsolute.html',1,'']]],
4 | ['acyclicgraph',['AcyclicGraph',['../classAcyclicGraph.html',1,'']]],
5 | ['acyclicgraphmanipulator',['AcyclicGraphManipulator',['../classAcyclicGraphManipulator.html',1,'']]],
6 | ['addition',['Addition',['../classAddition.html',1,'']]]
7 | ];
8 |
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4 | ['lmfunctor',['LMFunctor',['../structLMFunctor.html',1,'']]],
5 | ['load',['load',['../classAcyclicGraphManipulator.html#af84d3a060598f93d6b0752e99d7df019',1,'AcyclicGraphManipulator']]],
6 | ['log',['Log',['../classLog.html',1,'']]]
7 | ];
8 |
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7 |
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4 | ['ag_5fsize',['ag_size',['../classAcyclicGraphManipulator.html#a1b0e2746882dd6cffae75018c831d99d',1,'AcyclicGraphManipulator']]],
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6 | ];
7 |
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/tests/test_main.cpp:
--------------------------------------------------------------------------------
1 | /*!
2 | * \file test_main.cc
3 | *
4 | * \author Geoffrey F. Bomarito
5 | * \date
6 | *
7 | * This file contains the main function for driving unit tests.
8 | */
9 |
10 | #include
11 |
12 | #include
13 | #include
14 | #include
15 |
16 | #include "gtest/gtest.h"
17 |
18 | int main(int argc, char **argv) {
19 | srand (time(NULL));
20 | ::testing::InitGoogleTest(&argc, argv);
21 | return RUN_ALL_TESTS();
22 | }
23 |
24 |
25 |
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6 |
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7 | ];
8 |
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8 |
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/doc/latex/dir_68267d1309a1af8e8297ef4c3efbcdba.tex:
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1 | \hypertarget{dir_68267d1309a1af8e8297ef4c3efbcdba}{}\section{/users0/gbomarit/\+Projects/\+Genetic\+\_\+\+Programming/bingo/bingocpp/src Directory Reference}
2 | \label{dir_68267d1309a1af8e8297ef4c3efbcdba}\index{/users0/gbomarit/\+Projects/\+Genetic\+\_\+\+Programming/bingo/bingocpp/src Directory Reference@{/users0/gbomarit/\+Projects/\+Genetic\+\_\+\+Programming/bingo/bingocpp/src Directory Reference}}
3 | \subsection*{Files}
4 | \begin{DoxyCompactItemize}
5 | \end{DoxyCompactItemize}
6 |
--------------------------------------------------------------------------------
/doc/html/search/nomatches.html:
--------------------------------------------------------------------------------
1 |
2 |
3 |
4 |
5 |
6 |
7 |
8 |
11 |
12 |
13 |
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1 | var searchData=
2 | [
3 | ['op_5fvec',['op_vec',['../classAcyclicGraphManipulator.html#a23c0c3e199c8d25e4ca4946410ceb96b',1,'AcyclicGraphManipulator']]],
4 | ['oper_5finterface',['oper_interface',['../classAcyclicGraph.html#a82c104a4c80268bd7705be59c99b73c7',1,'AcyclicGraph']]],
5 | ['opt_5frate',['opt_rate',['../classAcyclicGraph.html#a8d3ba0273e9b1084dc9b165e5f9231fb',1,'AcyclicGraph::opt_rate()'],['../classAcyclicGraphManipulator.html#ac6d1c55c9a9012663f66b3c027abef82',1,'AcyclicGraphManipulator::opt_rate()']]]
6 | ];
7 |
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/doc/latex/dir_d44c64559bbebec7f509842c48db8b23.tex:
--------------------------------------------------------------------------------
1 | \hypertarget{dir_d44c64559bbebec7f509842c48db8b23}{}\section{/users0/gbomarit/\+Projects/\+Genetic\+\_\+\+Programming/bingo/bingocpp/include Directory Reference}
2 | \label{dir_d44c64559bbebec7f509842c48db8b23}\index{/users0/gbomarit/\+Projects/\+Genetic\+\_\+\+Programming/bingo/bingocpp/include Directory Reference@{/users0/gbomarit/\+Projects/\+Genetic\+\_\+\+Programming/bingo/bingocpp/include Directory Reference}}
3 | \subsection*{Directories}
4 | \begin{DoxyCompactItemize}
5 | \end{DoxyCompactItemize}
6 |
--------------------------------------------------------------------------------
/.gitignore:
--------------------------------------------------------------------------------
1 | # Prerequisites
2 | *.d
3 |
4 | # Compiled Object files
5 | *.slo
6 | *.lo
7 | *.o
8 | *.obj
9 |
10 | # Precompiled Headers
11 | *.gch
12 | *.pch
13 |
14 | # Compiled Dynamic libraries
15 | *.so
16 | *.dylib
17 | *.dll
18 |
19 | # Fortran module files
20 | *.mod
21 | *.smod
22 |
23 | # Compiled Static libraries
24 | *.lai
25 | *.la
26 | *.a
27 | *.lib
28 |
29 | # Executables
30 | *.exe
31 | *.out
32 | *.app
33 | *.x
34 |
35 | # Build directory
36 | build/
37 | Debug/
38 | Release/
39 | Build/
40 |
41 | # Python Build
42 | __pycache__/
43 |
--------------------------------------------------------------------------------
/include/bingocpp/version.h:
--------------------------------------------------------------------------------
1 | /*
2 | * This file contains definitions made in CMakeLists.txt
3 | * that we want available in the source code.
4 | * In the source code, include "BingoCpp/version.h" (no .in suffix).
5 | * This header file will be generated, and filled with the
6 | * right definition values. Change the namings as you wish,
7 | * but make sure they match up with whats in CMakeLists.txt.
8 | */
9 | #define PROJECT_VERSION_MAJOR 0
10 | #define PROJECT_VERSION_MINOR 4
11 | #define PROJECT_VERSION_PATCH 0
12 | #define PROJECT_VERSION_TWEAK 0
13 |
--------------------------------------------------------------------------------
/doc/html/search/searchdata.js:
--------------------------------------------------------------------------------
1 | var indexSectionsWithContent =
2 | {
3 | 0: "abcdefgilmnoprstuvxy",
4 | 1: "acdefilmopstx",
5 | 2: "fgtu",
6 | 3: "acdegilmnoprsuv",
7 | 4: "acdfgmnorstxy",
8 | 5: "b"
9 | };
10 |
11 | var indexSectionNames =
12 | {
13 | 0: "all",
14 | 1: "classes",
15 | 2: "files",
16 | 3: "functions",
17 | 4: "variables",
18 | 5: "pages"
19 | };
20 |
21 | var indexSectionLabels =
22 | {
23 | 0: "All",
24 | 1: "Classes",
25 | 2: "Files",
26 | 3: "Functions",
27 | 4: "Variables",
28 | 5: "Pages"
29 | };
30 |
31 |
--------------------------------------------------------------------------------
/doc/html/search/all_f.js:
--------------------------------------------------------------------------------
1 | var searchData=
2 | [
3 | ['term_5fvec',['term_vec',['../classAcyclicGraphManipulator.html#a4eae07e6d85c11dd5c24e74beecb2682',1,'AcyclicGraphManipulator']]],
4 | ['terminal_5fprob',['terminal_prob',['../classAcyclicGraphManipulator.html#a0b11805aca890b75517094e6afd98875',1,'AcyclicGraphManipulator']]],
5 | ['train',['train',['../structLMFunctor.html#a025c08d9282710fb0766dcee6dd8ff07',1,'LMFunctor']]],
6 | ['training_5fdata_2eh',['training_data.h',['../training__data_8h.html',1,'']]],
7 | ['trainingdata',['TrainingData',['../structTrainingData.html',1,'']]]
8 | ];
9 |
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/doc/latex/Makefile:
--------------------------------------------------------------------------------
1 | all: refman.pdf
2 |
3 | pdf: refman.pdf
4 |
5 | refman.pdf: clean refman.tex
6 | pdflatex refman
7 | makeindex refman.idx
8 | pdflatex refman
9 | latex_count=8 ; \
10 | while egrep -s 'Rerun (LaTeX|to get cross-references right)' refman.log && [ $$latex_count -gt 0 ] ;\
11 | do \
12 | echo "Rerunning latex...." ;\
13 | pdflatex refman ;\
14 | latex_count=`expr $$latex_count - 1` ;\
15 | done
16 | makeindex refman.idx
17 | pdflatex refman
18 |
19 |
20 | clean:
21 | rm -f *.ps *.dvi *.aux *.toc *.idx *.ind *.ilg *.log *.out *.brf *.blg *.bbl refman.pdf
22 |
--------------------------------------------------------------------------------
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1 | var searchData=
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5 | ['add_5fnode_5ftype',['add_node_type',['../classAcyclicGraphManipulator.html#aea284c38a894e8bd6a7d19f0c94ce6c1',1,'AcyclicGraphManipulator']]]
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7 |
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/include/bingocpp/version.h.in:
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1 | /*
2 | * This file contains definitions made in CMakeLists.txt
3 | * that we want available in the source code.
4 | * In the source code, include "BingoCpp/version.h" (no .in suffix).
5 | * This header file will be generated, and filled with the
6 | * right definition values. Change the namings as you wish,
7 | * but make sure they match up with whats in CMakeLists.txt.
8 | */
9 | #define PROJECT_VERSION_MAJOR @PROJECT_VERSION_MAJOR@
10 | #define PROJECT_VERSION_MINOR @PROJECT_VERSION_MINOR@
11 | #define PROJECT_VERSION_PATCH @PROJECT_VERSION_PATCH@
12 | #define PROJECT_VERSION_TWEAK @PROJECT_VERSION_TWEAK@
13 |
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1 | var searchData=
2 | [
3 | ['calculate_5fpartials',['calculate_partials',['../utils_8h.html#a5836ec6058e585f69258a177ae67a000',1,'utils.cpp']]],
4 | ['complexity',['complexity',['../classAcyclicGraph.html#a66f52b6e177fdef6f9578e400d8efe93',1,'AcyclicGraph']]],
5 | ['copy',['copy',['../classAcyclicGraph.html#a0e3956f4b7ea48b386e32032ac139e04',1,'AcyclicGraph']]],
6 | ['count_5fconstants',['count_constants',['../classAcyclicGraph.html#a0f430cfe917cb859478a595560acd590',1,'AcyclicGraph']]],
7 | ['crossover',['crossover',['../classAcyclicGraphManipulator.html#a48cbf21ddadc69fd9122ad923532b105',1,'AcyclicGraphManipulator']]]
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9 |
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/include/benchmarking/benchmark_logging.h:
--------------------------------------------------------------------------------
1 | #ifndef APP_BENCMARK_UTILS_BENCHMARK_LOGGING_H_
2 | #define APP_BENCMARK_UTILS_BENCHMARK_LOGGING_H_
3 |
4 | #include
5 |
6 | #include
7 |
8 | void PrintHeader(std::string title="PERFORMANCE BENCHMARKS");
9 | void PrintResults(const Eigen::ArrayXd &run_times, const std::string &name);
10 | std::string StringPrecision(double val, int precision);
11 | void OutputParams(const std::string &name, const std::string &mean,
12 | const std::string &std, const std::string &min,
13 | const std::string &max);
14 |
15 | #endif //APP_BENCHMARK_UTILS_BENCHMARK_LOGGING_H_
--------------------------------------------------------------------------------
/cmake/Colors.cmake:
--------------------------------------------------------------------------------
1 | IF(NOT WIN32)
2 | string(ASCII 27 Esc)
3 | set(ColorReset "${Esc}[m")
4 | set(ColorBold "${Esc}[1m")
5 | set(Red "${Esc}[31m")
6 | set(Green "${Esc}[32m")
7 | set(Yellow "${Esc}[33m")
8 | set(Blue "${Esc}[34m")
9 | set(Magenta "${Esc}[35m")
10 | set(Cyan "${Esc}[36m")
11 | set(White "${Esc}[37m")
12 | set(BoldRed "${Esc}[1;31m")
13 | set(BoldGreen "${Esc}[1;32m")
14 | set(BoldYellow "${Esc}[1;33m")
15 | set(BoldBlue "${Esc}[1;34m")
16 | set(BoldMagenta "${Esc}[1;35m")
17 | set(BoldCyan "${Esc}[1;36m")
18 | set(BoldWhite "${Esc}[1;37m")
19 | ENDIF()
20 |
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1 | var searchData=
2 | [
3 | ['implicitregression',['ImplicitRegression',['../structImplicitRegression.html',1,'']]],
4 | ['implicittrainingdata',['ImplicitTrainingData',['../structImplicitTrainingData.html',1,'ImplicitTrainingData'],['../structImplicitTrainingData.html#a517aa36137750f3d4299491b030b7431',1,'ImplicitTrainingData::ImplicitTrainingData(Eigen::ArrayXXd vx)'],['../structImplicitTrainingData.html#a5bea19d7ebed073cab7dbad3a0aeaeb2',1,'ImplicitTrainingData::ImplicitTrainingData(Eigen::ArrayXXd vx, Eigen::ArrayXXd vdx_dt)']]],
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7 |
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6 | ['fitness_5fmetric_2eh',['fitness_metric.h',['../fitness__metric_8h.html',1,'']]],
7 | ['fitnessmetric',['FitnessMetric',['../structFitnessMetric.html',1,'']]],
8 | ['float_5flim',['float_lim',['../classAcyclicGraphManipulator.html#a6591f90b81ad497237fc80e923dae793',1,'AcyclicGraphManipulator']]]
9 | ];
10 |
--------------------------------------------------------------------------------
/__init__.py:
--------------------------------------------------------------------------------
1 | from .build.bingocpp import Equation, \
2 | AGraph, \
3 | ExplicitRegression, \
4 | ExplicitTrainingData, \
5 | ImplicitRegression, \
6 | ImplicitTrainingData, \
7 | evaluation_backend, \
8 | simplification_backend, \
9 | FitnessFunction, \
10 | VectorBasedFunction, \
11 | TrainingData, \
12 | GradientMixin, \
13 | VectorGradientMixin
14 |
15 | del build
16 |
--------------------------------------------------------------------------------
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3 | ['savitzky_5fgolay',['savitzky_golay',['../utils_8h.html#a477f6a4d628d505fd6b0551cf2832850',1,'utils.cpp']]],
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5 | ['simplify_5fstack',['simplify_stack',['../classAcyclicGraphManipulator.html#af53180fce6c3aa0deeaa9db2d1877990',1,'AcyclicGraphManipulator']]],
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8 |
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2 | [
3 | ['rand_5foperator',['rand_operator',['../classAcyclicGraphManipulator.html#a7a2a7243ed3ee04a3ce424b1b9a9d594',1,'AcyclicGraphManipulator']]],
4 | ['rand_5foperator_5fparams',['rand_operator_params',['../classAcyclicGraphManipulator.html#affb7623093d462e3f03507c3b24f6fa4',1,'AcyclicGraphManipulator']]],
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8 | ];
9 |
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/doc/latex/dir_dcbc573d067b13a200a39ad3adabc01a.tex:
--------------------------------------------------------------------------------
1 | \hypertarget{dir_dcbc573d067b13a200a39ad3adabc01a}{}\section{/users0/gbomarit/\+Projects/\+Genetic\+\_\+\+Programming/bingo/bingocpp/include/\+Bingo\+Cpp Directory Reference}
2 | \label{dir_dcbc573d067b13a200a39ad3adabc01a}\index{/users0/gbomarit/\+Projects/\+Genetic\+\_\+\+Programming/bingo/bingocpp/include/\+Bingo\+Cpp Directory Reference@{/users0/gbomarit/\+Projects/\+Genetic\+\_\+\+Programming/bingo/bingocpp/include/\+Bingo\+Cpp Directory Reference}}
3 | \subsection*{Files}
4 | \begin{DoxyCompactItemize}
5 | \item
6 | file \hyperlink{fitness__metric_8h}{fitness\+\_\+metric.\+h}
7 | \item
8 | file \hyperlink{graph__manip_8h}{graph\+\_\+manip.\+h}
9 | \item
10 | file \hyperlink{training__data_8h}{training\+\_\+data.\+h}
11 | \item
12 | file \hyperlink{utils_8h}{utils.\+h}
13 | \end{DoxyCompactItemize}
14 |
--------------------------------------------------------------------------------
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4 | ['calculate_5fpartials',['calculate_partials',['../utils_8h.html#a5836ec6058e585f69258a177ae67a000',1,'utils.cpp']]],
5 | ['complexity',['complexity',['../classAcyclicGraph.html#a66f52b6e177fdef6f9578e400d8efe93',1,'AcyclicGraph']]],
6 | ['constants',['constants',['../classAcyclicGraph.html#a06e93c34292ca14a3e963b2c2cc4b57a',1,'AcyclicGraph']]],
7 | ['copy',['copy',['../classAcyclicGraph.html#a0e3956f4b7ea48b386e32032ac139e04',1,'AcyclicGraph']]],
8 | ['cos',['Cos',['../classCos.html',1,'']]],
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10 | ['crossover',['crossover',['../classAcyclicGraphManipulator.html#a48cbf21ddadc69fd9122ad923532b105',1,'AcyclicGraphManipulator']]]
11 | ];
12 |
--------------------------------------------------------------------------------
/include/benchmarking/benchmark_data.h:
--------------------------------------------------------------------------------
1 | #ifndef APP_BENCMARK_UTILS_BENCHMARK_DATA_H_
2 | #define APP_BENCMARK_UTILS_BENCHMARK_DATA_H_
3 |
4 | #include
5 | #include
6 |
7 | using namespace bingo;
8 |
9 | struct BenchmarkTestData {
10 | std::vector indv_list;
11 | Eigen::ArrayXXd x_vals;
12 | BenchmarkTestData() {}
13 | BenchmarkTestData(std::vector &il, Eigen::ArrayXXd &x):
14 | indv_list(il), x_vals(x) {}
15 | };
16 |
17 | void LoadBenchmarkData(BenchmarkTestData &benchmark_test_data);
18 | void LoadAgraphIndvidualData(std::vector &indv_list);
19 | void SetIndvConstants(AGraph &indv, std::string &const_string);
20 | void SetIndvStack(AGraph &indv, std::string &stack_string);
21 | Eigen::ArrayXXd LoadAgraphXVals();
22 | double StandardDeviation(const Eigen::ArrayXd &vec);
23 |
24 | #endif // APP_BENCMARK_UTILS_BENCHMARK_DATA_H_
25 |
--------------------------------------------------------------------------------
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5 | ['operation',['Operation',['../classOperation.html',1,'']]],
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11 |
--------------------------------------------------------------------------------
/cmake/ConfigSafeGuards.cmake:
--------------------------------------------------------------------------------
1 | # guard against in-source builds
2 | if(${CMAKE_SOURCE_DIR} STREQUAL ${CMAKE_BINARY_DIR})
3 | message(FATAL_ERROR "In-source builds not allowed. Please make a new directory (called a build directory) and run CMake from there.")
4 | endif()
5 |
6 | # guard against bad build-type strings
7 | if (NOT CMAKE_BUILD_TYPE)
8 | message(STATUS "No build type selected, default to Debug")
9 | set(CMAKE_BUILD_TYPE "Debug")
10 | endif()
11 |
12 | string(TOLOWER "${CMAKE_BUILD_TYPE}" cmake_build_type_tolower)
13 | string(TOUPPER "${CMAKE_BUILD_TYPE}" cmake_build_type_toupper)
14 | if( NOT cmake_build_type_tolower STREQUAL "debug"
15 | AND NOT cmake_build_type_tolower STREQUAL "release"
16 | AND NOT cmake_build_type_tolower STREQUAL "profile"
17 | AND NOT cmake_build_type_tolower STREQUAL "relwithdebinfo"
18 | AND NOT cmake_build_type_tolower STREQUAL "coverage")
19 | message(FATAL_ERROR "Unknown build type \"${CMAKE_BUILD_TYPE}\". Allowed values are Debug, Coverage, Release, Profile, RelWithDebInfo (case-insensitive).")
20 | endif()
21 |
--------------------------------------------------------------------------------
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