├── R ├── gcCor.R ├── makeCovariates.R ├── makeOffset.R ├── randomize.R └── txt2bin.R ├── README.md ├── data ├── K.bin ├── K.txt ├── X.bin ├── X.txt ├── Y.bin ├── Y.txt ├── chr11.gz └── chr11.gz.tbi └── src ├── ASVCF ├── Makefile ├── countAS.c ├── createASVCF.sh ├── pasteFiles.c ├── qcFilterBam.c ├── qcFilterBam.h └── zpaste.c ├── Makefile ├── main.c ├── makeUsage.sh ├── nbem.c ├── nbem.h ├── nbglm.c ├── nbglm.h ├── parseVCF.c ├── parseVCF.h ├── sort.c ├── sort.h ├── usage.txt ├── util.c └── util.h /R/gcCor.R: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/natsuhiko/rasqual/HEAD/R/gcCor.R -------------------------------------------------------------------------------- /R/makeCovariates.R: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/natsuhiko/rasqual/HEAD/R/makeCovariates.R 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