├── .gitignore ├── README.md ├── pubmed_download.py ├── requirements.txt ├── scripts ├── build_biorex_datasets.sh ├── run_biorex_exp.sh └── run_test_pred.sh └── src ├── dataset_format_converter ├── annotation.py ├── convert_pubtator_2_tsv.py ├── document.py ├── drugprot_loader.py ├── sentence_spliter.py └── utils.py ├── run_ncbi_rel_exp.py ├── tf_wrapper.py └── utils ├── run_pubtator_eval.py └── sampling └── run_sample_subset_from_tsv.py /.gitignore: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/ncbi/BioREx/HEAD/.gitignore -------------------------------------------------------------------------------- /README.md: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/ncbi/BioREx/HEAD/README.md -------------------------------------------------------------------------------- /pubmed_download.py: 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