├── .github └── ISSUE_TEMPLATE │ ├── bug-report-template.md │ └── feature-request-template.md ├── LICENSE.txt ├── PRIVACY.md ├── README.md ├── dist ├── fcs.py └── run_fcsadaptor.sh └── examples ├── FCS_combo_test.fcs_adaptor_report.txt ├── FCS_combo_test.fcs_gx_report.txt └── FCS_combo_test.taxonomy.rpt /.github/ISSUE_TEMPLATE/bug-report-template.md: -------------------------------------------------------------------------------- 1 | --- 2 | name: Bug Report Template 3 | about: Create a report to help us improve 4 | title: "[BUG]: " 5 | labels: '' 6 | assignees: '' 7 | 8 | --- 9 | 10 | *Describe the bug* 11 | A clear and concise description of what the bug is. 12 | 13 | *To Reproduce* 14 | Copy the full ``run_fcsadaptor.sh``/``fcs.py`` command used. 15 | 16 | If you are having trouble with your genome, please ensure that you can run the pipeline with one of our test genomes first. If your installation works fine with the sample input, please tell us if you are willing and able to share your genome with us, if asked. 17 | 18 | *Software versions (please complete the following information):* 19 | - OS [e.g. CentOS 7, macOS , etc.]. 20 | - Cloud Platform VM [e.g. AWS , GCP], if applicable. 21 | - Docker or Singularity version [``docker --version``]/[``singularity --version``]. 22 | - Docker or Singularity FCS image version [``docker image ls``]. 23 | - Python version if using FCS-GX [``python --version``]. 24 | 25 | *Log Files* 26 | Please rerun with the ``--debug`` flag and attach an archive (e.g. zip or tarball) of the logs in the directory [``debug/tmp-outdir*.log``] for FCS-adaptor or the saved log file [``run_gx.py ... > GX.log 2>&1``] for FCS-GX. 27 | 28 | *Additional context* 29 | Add any other context about the problem here. 30 | -------------------------------------------------------------------------------- /.github/ISSUE_TEMPLATE/feature-request-template.md: -------------------------------------------------------------------------------- 1 | --- 2 | name: Feature Request Template 3 | about: Suggest an idea for this project 4 | title: "[FEATURE REQUEST]: <title>" 5 | labels: '' 6 | assignees: '' 7 | 8 | --- 9 | 10 | *Is this a feature request for FCS-adaptor or FCS-GX?* 11 | 12 | *Describe the problem you'd like to be solved* 13 | A clear and concise description of what the problem is. 14 | 15 | *Describe the solution you'd like* 16 | A clear and concise description of what you want to happen. 17 | 18 | *Describe alternatives you've considered* 19 | A clear and concise description of any alternative solutions or features you've considered. 20 | -------------------------------------------------------------------------------- /LICENSE.txt: -------------------------------------------------------------------------------- 1 | LICENSING TERMS 2 | 3 | NCBI FCS tool suite 4 | 5 | This software authored by NCBI is a "United States 6 | Government Work" under the terms of the United States Copyright 7 | Act. It was written as part of the authors' official duties as United 8 | States Government employees and thus cannot be copyrighted. This 9 | software is freely available to the public for use. The National 10 | Library of Medicine and the U.S. Government have not placed any 11 | restriction on its use or reproduction. 12 | 13 | Although all reasonable efforts have been taken to ensure the accuracy 14 | and reliability of the software and data, the NLM and the 15 | U.S. Government do not and cannot warrant the performance or results 16 | that may be obtained by using this software or data. The NLM and the 17 | U.S. Government disclaim all warranties, express or implied, including 18 | warranties of performance, merchantability or fitness for any 19 | particular purpose. 20 | 21 | Please cite NCBI in any work or product based on this material. 22 | 23 | -------------------------------------------------------------------------------- /PRIVACY.md: -------------------------------------------------------------------------------- 1 | # Privacy 2 | 3 | ## Privacy Statement 4 | We collect limited usage data for each run of FCS. The information collected helps us determine how FCS is being used in the scientific community. The reports help us to support FCS development, so we encourage users to report usage when possible. Additional privacy and security policy information can be found on the [NLM Web Policies](https://www.nlm.nih.gov/web_policies.html). page. 5 | The following is the usage data that is currently collected: 6 | 7 | | Reported parameter | Description | 8 | | ----------- | ----------- | 9 | | IP | The apparent IP address of the machine running FCS | 10 | | ncbi_architecture | Host operating system | 11 | | ncbi_container_engine | FCS container used (docker, singularity) | 12 | | ncbi_duration | Duration of the application running time | 13 | | ncbi_exit_status | Exit Status | 14 | | ncbi_gxdb | FCS-GX database version | 15 | | ncbi_mem_gib | Host memory (GiB) | 16 | | ncbi_mode | FCS run mode (db, screen, clean) | 17 | | ncbi_op | FCS run operation (genome, get, check, all) | 18 | | ncbi_python_version | Host Python version | 19 | | sgversion | FCS software version | 20 | 21 | ## Opt out of usage reporting 22 | You can disable usage reporting by setting the `--no-report-analytics` parameter for the FCS-GX `fcs.py` runner script. 23 | -------------------------------------------------------------------------------- /README.md: -------------------------------------------------------------------------------- 1 | # FCS 2 | 3 | The NCBI Foreign Contamination Screen (FCS) is a tool suite for identifying and removing contaminant sequences in genome assemblies. Contaminants are defined as sequences in a dataset that do not originate from the biological source organism and can arise from a variety of environmental and laboratory sources. FCS will help you remove contaminants from genomes before submission to GenBank. 4 | 5 | ## FCS-adaptor 6 | FCS-adaptor detects adaptor and vector contamination in genome sequences. FCS-adaptor is a high-throughput implementation of [NCBI VecScreen](https://www.ncbi.nlm.nih.gov/tools/vecscreen/about/). The FCS-adaptor executable retrieves a Docker or Singularity container and runs a pipeline to screen input sequences against a database of adaptors and vectors using stringent BLAST searches. 7 | 8 | Please read the [wiki](https://github.com/ncbi/fcs/wiki/FCS-adaptor-quickstart) for instructions on how to run FCS-adaptor. 9 | 10 | ## FCS-GX 11 | FCS-GX detects contamination from foreign organisms in genome sequences using the genome cross-species aligner (GX). The FCS-GX executable retrieves a Docker or Singularity container and runs a pipeline to align sequences to a large database of NCBI genomes through modified k-mer seeds and assign a most likely taxonomic division. FCS-GX classifies sequences as contaminant when their taxonomic assignment is different from the user-provided taxonomic identifier. 12 | 13 | Please read the [wiki](https://github.com/ncbi/fcs/wiki/FCS-GX-quickstart) for instructions on how to run FCS-GX. 14 | 15 | ## NEWS 16 | :exclamation: FCS is live on on [Galaxy](https://usegalaxy.org/)! Tutorial [here](https://training.galaxyproject.org/training-material/topics/sequence-analysis/tutorials/ncbi-fcs/tutorial.html). 17 | 18 | ## REFERENCES 19 | 20 | ### FCS-GX 21 | Astashyn A, Tvedte ES, Sweeney D, Sapojnikov V, Bouk N, Joukov V, Mozes E, Strope PK, Sylla PM, Wagner L, Bidwell SL, Brown LC, Clark K, Davis EW, Smith-White B, Hlavina W, Pruitt KD, Schneider VA, Murphy TD. Rapid and sensitive detection of genome contamination at scale with FCS-GX. Genome Biol. 2024 Feb 26;25(1):60. doi: 10.1186/s13059-024-03198-7. PMID: 38409096; PMCID: PMC10898089. 22 | 23 | [Read the FCS-GX paper](https://genomebiology.biomedcentral.com/articles/10.1186/s13059-024-03198-7) 24 | 25 | ## LICENSING 26 | The NCBI FCS tool suite software authored by NCBI is a "United States 27 | Government Work" under the terms of the United States Copyright 28 | Act. It was written as part of the authors' official duties as United 29 | States Government employees and thus cannot be copyrighted. This 30 | software is freely available to the public for use. The National 31 | Library of Medicine and the U.S. Government have not placed any 32 | restriction on its use or reproduction. 33 | 34 | Although all reasonable efforts have been taken to ensure the accuracy 35 | and reliability of the software and data, the NLM and the 36 | U.S. Government do not and cannot warrant the performance or results 37 | that may be obtained by using this software or data. The NLM and the 38 | U.S. Government disclaim all warranties, express or implied, including 39 | warranties of performance, merchantability or fitness for any 40 | particular purpose. 41 | 42 | Please cite NCBI in any work or product based on this material. 43 | 44 | ## FUNDING 45 | This work was supported by the National Center for Biotechnology Information of the National Library of Medicine (NLM), National Institutes of Health. 46 | 47 | FCS is part of the [NIH Comparative Genomics Resource (CGR)](https://www.ncbi.nlm.nih.gov/comparative-genomics-resource/), an NLM project to establish an ecosystem to facilitate reliable comparative genomics analyses for all eukaryotic organisms. 48 | 49 | -------------------------------------------------------------------------------- /dist/fcs.py: -------------------------------------------------------------------------------- 1 | #!/usr/bin/env python3 2 | # pylint: disable=C0301,C0114,C0103,C0116,R0913,R0914,W0511,R1732,R0916 3 | """ 4 | PUBLIC DOMAIN NOTICE 5 | National Center for Biotechnology Information 6 | 7 | This software is a "United States Government Work" under the 8 | terms of the United States Copyright Act. It was written as part of 9 | the authors' official duties as United States Government employees and 10 | thus cannot be copyrighted. This software is freely available 11 | to the public for use. The National Library of Medicine and the U.S. 12 | Government have not placed any restriction on its use or reproduction. 13 | 14 | Although all reasonable efforts have been taken to ensure the accuracy 15 | and reliability of the software and data, the NLM and the U.S. 16 | Government do not and cannot warrant the performance or results that 17 | may be obtained by using this software or data. The NLM and the U.S. 18 | Government disclaim all warranties, express or implied, including 19 | warranties of performance, merchantability or fitness for any particular 20 | purpose. 21 | 22 | Please cite NCBI in any work or product based on this material. 23 | 24 | """ 25 | 26 | import sys 27 | import argparse 28 | import os 29 | from pathlib import Path 30 | import subprocess 31 | import urllib.request 32 | import urllib.parse 33 | import atexit 34 | import time 35 | import platform 36 | import shutil 37 | import json 38 | 39 | assert ( 40 | sys.version_info.major >= 3 and sys.version_info.minor >= 7 41 | ), f"\nPython version: {sys.version_info}. Require python 3.7 or newer.\n" 42 | 43 | 44 | CONTAINER = "run_gx" 45 | DEFAULT_CONTAINER_DB = "/app/db/gxdb/" 46 | DEFAULT_VERSION = "0.5.5" 47 | DEFAULT_DOCKER_IMAGE = f"ncbi/fcs-gx:{DEFAULT_VERSION}" 48 | GX_BIN_DIR = Path("/app/bin") 49 | 50 | start_time = time.time() 51 | 52 | # data that will be reported back to NCBI at the end of execution. 53 | 54 | 55 | class GlobalStat: 56 | opt_in = False 57 | mode = "" 58 | exit_status = 1 59 | ncbi_op = "" 60 | container_engine = "" 61 | gxdb = "" 62 | gx_db_path = "" 63 | 64 | 65 | @atexit.register 66 | def report_to_ncbi_stat(): 67 | if not GlobalStat.opt_in: 68 | return 69 | url = "https://www.ncbi.nlm.nih.gov/stat?" 70 | elapsed_time = round(time.time() - start_time) 71 | # required 72 | url_args = {"ncbi_app": "fcs"} 73 | url_args["ncbi_op"] = GlobalStat.ncbi_op 74 | # not required 75 | python_version = sys.version.split()[0] 76 | architecture = platform.platform() 77 | mem_bytes = os.sysconf("SC_PAGE_SIZE") * os.sysconf("SC_PHYS_PAGES") # e.g. 4015976448 78 | mem_gib = mem_bytes / (1024.0**3) # e.g. 3.74 79 | url_args["ncbi_mem_gib"] = mem_gib 80 | url_args["ncbi_python_version"] = python_version 81 | url_args["ncbi_exit_status"] = GlobalStat.exit_status 82 | url_args["sgversion"] = DEFAULT_VERSION 83 | url_args["ncbi_architecture"] = architecture 84 | url_args["ncbi_duration"] = elapsed_time 85 | url_args["ncbi_mode"] = GlobalStat.mode 86 | url_args["ncbi_container_engine"] = GlobalStat.container_engine 87 | url_args["ncbi_gxdb"] = GlobalStat.gxdb 88 | url += urllib.parse.urlencode(url_args) 89 | 90 | try: 91 | with urllib.request.urlopen(url) as _: 92 | pass 93 | except Exception: # pylint: disable=W0703, W0612 94 | pass 95 | 96 | 97 | def find_argument(command, argument): 98 | """ 99 | this method looks into the command input for the value of an 100 | argument and its position 101 | 102 | example: 103 | find_argument("cmd -a A -b -c", "-a") would produce ('A', 6) 104 | 105 | However, this method has its limitations. It assumes uniqueness of args 106 | it assumes that args-values are not named such that an argument's name 107 | is a part of another argument's name 108 | example: 109 | find_argument("cmd not-a -a A", "-a") would produce ('-a', 9) 110 | which not desired 111 | 112 | Returns: value (str) 113 | position (int) 114 | 115 | """ 116 | arg_pos = command.find(argument + " ") 117 | # check that we have found it 118 | if arg_pos == -1: 119 | arg_pos = command.find(argument + "=") 120 | if arg_pos == -1: 121 | return None, None 122 | val = command[(arg_pos + len(argument)) :] 123 | string_size = len(val) 124 | a = 0 125 | while string_size > a and (val[a] == " " or val[a] == "="): 126 | a += 1 127 | if a == string_size: 128 | return None, None 129 | b = a 130 | while string_size > b and val[b] != " ": 131 | b += 1 132 | return val[a:b], arg_pos + len(argument) 133 | 134 | 135 | class RunFCS: 136 | def __init__(self, parser): 137 | self.parser = parser 138 | self.args, self.extra_args = parser.parse_known_args() 139 | self.joined_extra_args = " ".join(self.extra_args) 140 | 141 | using_singularity = ( 142 | self.args.docker_image.endswith(".sif") 143 | or self.args.docker_image.startswith("docker://") 144 | and shutil.which("singularity") 145 | ) 146 | GlobalStat.container_engine = "singularity" if using_singularity else "docker" 147 | self.mount_arg = ( 148 | "-v" 149 | if GlobalStat.container_engine == "docker" 150 | else "--bind" if GlobalStat.container_engine == "singularity" else "" 151 | ) 152 | self.directory_volume_map = {} 153 | 154 | def substitute_file_argument(self, cmd, argument, pos, volume, create_dir=False): 155 | self.directory_volume_map[volume] = Path(os.path.abspath(os.path.dirname(argument))) 156 | file_name = os.path.basename(argument) 157 | replacement = str(Path(volume) / file_name) 158 | if create_dir: 159 | os.makedirs(self.directory_volume_map[volume], exist_ok=True) 160 | return cmd[:pos] + cmd[pos:].replace(argument, replacement, 1) 161 | 162 | def substitute_directory_argument(self, cmd, argument, pos, volume, create_dir=False): 163 | self.directory_volume_map[volume] = Path(os.path.realpath(argument)) 164 | if create_dir: 165 | os.makedirs(self.directory_volume_map[volume], exist_ok=True) 166 | return cmd[:pos] + cmd[pos:].replace(argument, volume, 1) 167 | 168 | def safe_exec(self, args): 169 | if self.args.debug: 170 | print("safe_exec: ", " ".join(args)) 171 | if not self.args.dry_run: 172 | subprocess.run(args, shell=False, check=True, text=True, stdout=sys.stdout, stderr=sys.stderr) 173 | 174 | def make_dirs(self, path, exist_ok): 175 | if self.args.debug: 176 | print("make_dirs: ", path, exist_ok) 177 | if not self.args.dry_run: 178 | os.makedirs(path, exist_ok=exist_ok) 179 | 180 | def get_db_build_date(self): 181 | try: 182 | file_list = [f for f in os.listdir(GlobalStat.gx_db_path) if f.endswith(".meta.jsonl")] 183 | if file_list: 184 | with open(os.path.join(GlobalStat.gx_db_path, file_list[0])) as f: # pylint: disable=W1514 185 | file_content = json.load(f) 186 | GlobalStat.gxdb = file_content["build-date"] 187 | except Exception as e: # pylint: disable=W0703 188 | if self.args.debug: 189 | print(f"Failed to extract the database's build-date: {e}") 190 | 191 | def run_sync_files(self): 192 | extra_docker_arg = [] 193 | 194 | if GlobalStat.container_engine == "docker": 195 | # GP-34570: -i to propagate keyboard-interrupt signals; -t to connect stdout. 196 | extra_docker_arg = ["-it", "--rm"] 197 | 198 | sync_files_args = [ 199 | GlobalStat.container_engine, 200 | "run" if GlobalStat.container_engine == "docker" else "exec", 201 | *extra_docker_arg, 202 | ] 203 | 204 | for volume, path in self.directory_volume_map.items(): 205 | sync_files_args += [self.mount_arg, str(path) + ":" + volume] 206 | 207 | sync_files_args += [ 208 | self.args.docker_image, 209 | "python3", 210 | str(GX_BIN_DIR / "sync_files"), 211 | self.args.cmd, 212 | ] + self.joined_extra_args.split() 213 | 214 | self.safe_exec(sync_files_args) 215 | 216 | if GlobalStat.opt_in: 217 | self.get_db_build_date() 218 | 219 | def run_gx(self): 220 | docker_args = [ 221 | GlobalStat.container_engine, 222 | "run" if GlobalStat.container_engine == "docker" else "exec", 223 | ] 224 | 225 | if self.args.env_file is not None: 226 | docker_args += ["--env-file", self.args.env_file] 227 | 228 | if GlobalStat.container_engine == "docker": 229 | docker_args += ["-i", "--rm"] 230 | 231 | for volume, path in self.directory_volume_map.items(): 232 | docker_args += [self.mount_arg, str(path) + ":" + volume] 233 | 234 | if GlobalStat.mode == "screen": 235 | docker_args += [ 236 | self.args.docker_image, 237 | "python3", 238 | str(GX_BIN_DIR / "run_gx"), 239 | ] + self.joined_extra_args.split() 240 | else: 241 | docker_args += [ 242 | self.args.docker_image, 243 | str(GX_BIN_DIR / "gx"), 244 | "clean-genome", 245 | ] + self.joined_extra_args.split() 246 | 247 | self.safe_exec(docker_args) 248 | 249 | if GlobalStat.opt_in: 250 | self.get_db_build_date() 251 | 252 | def modify_screen_arguments(self): 253 | cmd = self.joined_extra_args 254 | argument, pos = find_argument(cmd, "--gx-db") 255 | if argument is not None: 256 | cmd = self.substitute_file_argument(cmd, argument, pos, DEFAULT_CONTAINER_DB) 257 | GlobalStat.gx_db_path = Path(os.path.abspath(os.path.dirname(argument))) / os.path.basename(argument) 258 | 259 | argument, pos = find_argument(cmd, "--fasta") 260 | if argument is not None: 261 | cmd = self.substitute_file_argument(cmd, argument, pos, "/sample-volume/") 262 | 263 | argument, pos = find_argument(cmd, "--out-dir") 264 | if argument is not None: 265 | cmd = self.substitute_directory_argument(cmd, argument, pos, "/output-volume/", True) 266 | elif "--help" not in cmd: 267 | self.directory_volume_map["/output-volume/"] = Path(os.path.realpath(".")) 268 | cmd += " --out-dir=/output-volume/" 269 | 270 | self.joined_extra_args = cmd 271 | 272 | def modify_db_arguments(self): 273 | cmd = self.joined_extra_args 274 | argument, pos = find_argument(cmd, "--dir") 275 | if argument is not None: 276 | cmd = self.substitute_directory_argument(cmd, argument, pos, DEFAULT_CONTAINER_DB, True) 277 | GlobalStat.gx_db_path = Path(os.path.realpath(argument)) 278 | elif "--help" not in cmd: 279 | print("Error: database path not specified") 280 | print('Please specify "--dir=path/to/db"') 281 | self.parser.print_usage() 282 | sys.exit() 283 | 284 | argument, pos = find_argument(cmd, "--mft") 285 | if argument is None and "--help" not in cmd: 286 | print("Error: database source is required") 287 | print('Please specify "--mft=url/or/path/to/db"') 288 | print("Please see https://github.com/ncbi/fcs/wiki/") 289 | self.parser.print_usage() 290 | sys.exit() 291 | elif argument is not None and Path(argument).exists(): 292 | cmd = self.substitute_file_argument(cmd, argument, pos, "/mft-volume/") 293 | 294 | self.joined_extra_args = cmd 295 | 296 | def modify_clean_arguments(self): 297 | cmd = self.joined_extra_args 298 | argument, pos = find_argument(cmd, "--input") 299 | if argument is None: 300 | argument, pos = find_argument(cmd, "-i") 301 | if argument is not None: 302 | cmd = self.substitute_file_argument(cmd, argument, pos, "/sample-volume/") 303 | 304 | argument, pos = find_argument(cmd, "--action-report") 305 | if argument is not None: 306 | cmd = self.substitute_file_argument(cmd, argument, pos, "/report-volume/") 307 | elif "--help" not in cmd: 308 | print("Error: action report file is required") 309 | print('Please specify "--action-report=path/to/action-report-file"') 310 | sys.exit() 311 | 312 | argument, pos = find_argument(cmd, "--output") 313 | if argument is None: 314 | argument, pos = find_argument(cmd, "-o") 315 | # add arguments section 316 | if argument is not None: 317 | cmd = self.substitute_file_argument(cmd, argument, pos, "/output-volume/", True) 318 | 319 | argument, pos = find_argument(cmd, "--contam-fasta-out") 320 | if argument is not None: 321 | cmd = self.substitute_file_argument(cmd, argument, pos, "/contam-out-volume/", True) 322 | 323 | self.joined_extra_args = cmd 324 | 325 | def run_screen_mode(self): 326 | GlobalStat.mode = "screen" 327 | self.modify_screen_arguments() 328 | if self.args.cmd == "genome": 329 | self.run_gx() 330 | elif self.args.cmd in ["adaptor", "all"]: 331 | print(f'"{self.args.cmd}" command not yet supported') 332 | self.parser.print_help() 333 | else: 334 | print("Error: Wrong command for screen mode") 335 | self.parser.print_help() 336 | 337 | def run_db_mode(self): 338 | GlobalStat.mode = "db" 339 | self.modify_db_arguments() 340 | if self.args.cmd in ["get", "check"]: 341 | self.run_sync_files() 342 | 343 | def run_clean_mode(self): 344 | GlobalStat.mode = "clean" 345 | self.modify_clean_arguments() 346 | if self.args.cmd in ["genome"]: 347 | self.run_gx() 348 | 349 | def run(self): 350 | if hasattr(self.args, "func"): 351 | self.args.func(self) 352 | else: 353 | self.parser.print_help() 354 | 355 | 356 | def configure_parser(parser): 357 | parser.add_argument( 358 | "--image", 359 | dest="docker_image", 360 | default=os.getenv("FCS_DEFAULT_IMAGE", "ncbi/fcs-gx:latest"), 361 | help="Dockerhub registry path, or a filepath to Singularity .sif image. default=$FCS_DEFAULT_IMAGE", 362 | ) 363 | 364 | parser.add_argument( 365 | "--debug", 366 | action="store_true", 367 | help="Debug mode", 368 | ) 369 | parser.add_argument( 370 | "--no-report-analytics", 371 | action="store_true", 372 | help="Do not send usage stats to NCBI. NCBI does not collect any personal information", 373 | ) 374 | parser.add_argument( 375 | "--env-file", 376 | default=None, 377 | help="file with environment variables", 378 | ) 379 | parser.add_argument( 380 | "--dry-run", 381 | dest="dry_run", 382 | action="store_true", 383 | help="do not actually do anything", 384 | ) 385 | return parser 386 | 387 | 388 | def main() -> int: 389 | parser = argparse.ArgumentParser( 390 | description="test", 391 | formatter_class=argparse.ArgumentDefaultsHelpFormatter, 392 | add_help=False, 393 | ) 394 | parser = configure_parser(parser) 395 | _, args = parser.parse_known_args() 396 | num_of_unknown_args = len(args) 397 | 398 | parser = argparse.ArgumentParser( 399 | description="Run FCS Tools", 400 | formatter_class=argparse.ArgumentDefaultsHelpFormatter, 401 | add_help=(len(sys.argv) <= 2), 402 | ) 403 | parser = configure_parser(parser) 404 | 405 | subparsers = parser.add_subparsers(dest="mode") 406 | # screen 407 | parser_screen = subparsers.add_parser("screen", add_help=(num_of_unknown_args <= 2)) 408 | parser_screen.add_argument( 409 | "cmd", 410 | choices=["genome", "adaptor", "all"], 411 | ) 412 | parser_screen.set_defaults(func=RunFCS.run_screen_mode) 413 | # db 414 | parser_db = subparsers.add_parser("db", add_help=(num_of_unknown_args <= 2)) 415 | parser_db.add_argument( 416 | "cmd", 417 | choices=["get", "check"], 418 | ) 419 | parser_db.set_defaults(func=RunFCS.run_db_mode) 420 | # clean 421 | parser_clean = subparsers.add_parser("clean", add_help=(num_of_unknown_args <= 2)) 422 | parser_clean.add_argument( 423 | "cmd", 424 | choices=["genome"], 425 | ) 426 | parser_clean.set_defaults(func=RunFCS.run_clean_mode) 427 | 428 | args, extra_args = parser.parse_known_args() 429 | 430 | if len(sys.argv) <= 1: 431 | parser.print_usage() 432 | sys.exit() 433 | 434 | GlobalStat.opt_in = ( 435 | not args.no_report_analytics 436 | and "--help" not in extra_args 437 | and not args.dry_run 438 | and os.getenv("DO_NOT_TRACK", "0") == "0" # GP-37725 439 | and os.getenv("NCBI_FCS_REPORT_ANALYTICS", "1") == "1" # GP-37725 440 | ) 441 | 442 | if ( # If none of the banner-switches are set, display the banner. GP-37725 443 | not args.no_report_analytics 444 | and os.getenv("DO_NOT_TRACK") is None 445 | and os.getenv("NCBI_FCS_REPORT_ANALYTICS") is None 446 | ): 447 | print( 448 | """ 449 | -------------------------------------------------------------------------------------------- 450 | 451 | NCBI collects limited usage data for each run of FCS by default. To disable usage reporting: 452 | 453 | python3 fcs.py --no-report-analytics ... 454 | 455 | or export NCBI_FCS_REPORT_ANALYTICS=1 to enable, 456 | or export NCBI_FCS_REPORT_ANALYTICS=0 to disable the reporting. 457 | 458 | Usage data collected by NCBI is documented in the FCS privacy notice 459 | at https://github.com/ncbi/fcs/blob/main/PRIVACY.md 460 | 461 | --------------------------------------------------------------------------------------------""", 462 | file=sys.stderr, 463 | ) 464 | 465 | if hasattr(args, "cmd"): 466 | GlobalStat.ncbi_op = args.cmd 467 | retcode = 0 468 | try: 469 | gx = RunFCS(parser) 470 | gx.run() 471 | GlobalStat.exit_status = 0 472 | except (RuntimeError, ValueError, KeyboardInterrupt) as exc: 473 | if args.debug: 474 | raise 475 | retcode = 1 476 | print(exc) 477 | return retcode 478 | 479 | 480 | if __name__ == "__main__": 481 | sys.exit(main()) 482 | -------------------------------------------------------------------------------- /dist/run_fcsadaptor.sh: -------------------------------------------------------------------------------- 1 | #!/bin/bash 2 | 3 | SCRIPT_NAME=$0 4 | DEFAULT_VERSION="0.5.5" 5 | DOCKER_IMAGE=ncbi/fcs-adaptor:${DEFAULT_VERSION} 6 | SINGULARITY_IMAGE="" 7 | CONTAINER_ENGINE="docker" 8 | 9 | usage() 10 | { 11 | cat <<EOF 12 | Usage: 13 | $SCRIPT_NAME [options] 14 | 15 | Options: 16 | 17 | --help 18 | --fasta-input <file> input FASTA file (required) 19 | --output-dir <directory> output path (required) 20 | --image <file> dockerhub address or sif file (required for singularity only) 21 | --container-engine <string> default docker 22 | --debug debug 23 | 24 | Taxonomy (exactly one required): 25 | --prok prokaryotes 26 | --euk eukaryotes 27 | 28 | EOF 29 | exit $1 30 | } 31 | 32 | DOCKER=docker 33 | DEBUG="" 34 | 35 | while [[ $# -gt 0 ]] 36 | do 37 | case $1 in 38 | -h|--help) 39 | echo "usage: " 40 | usage 0 41 | ;; 42 | --fasta-input) 43 | FASTA_INPUT="$2" 44 | shift # past argument 45 | ;; 46 | --output-dir) 47 | OUTPUT_DIR="$2" 48 | shift 49 | ;; 50 | --image) 51 | DOCKER_IMAGE="$2" 52 | SINGULARITY_IMAGE="$2" 53 | shift 54 | ;; 55 | --euk) 56 | TAX=--euk 57 | ;; 58 | --prok) 59 | TAX=--prok 60 | ;; 61 | --container-engine) 62 | CONTAINER_ENGINE=$2 63 | shift 64 | ;; 65 | --debug) 66 | DEBUG="--debug" 67 | shift 68 | ;; 69 | 70 | -*) 71 | echo "invalid option : '$1'" 72 | usage 10 73 | ;; 74 | *) 75 | echo "$SCRIPT_NAME does not accept any positional arguments" 76 | echo "$@" 77 | usage 10 78 | ;; 79 | esac 80 | shift 81 | done 82 | 83 | if [[ -z $TAX ]] 84 | then 85 | printf -- "Error: Taxonomy must be specified using --euk or --prok\n" 86 | usage 10 87 | fi 88 | 89 | # get full path and expand symlinks 90 | EXPANDED_FASTA=$(readlink -e $FASTA_INPUT) 91 | if [[ $? != 0 ]] ; then 92 | echo "Error: File not found $FASTA_INPUT"; exit 1; 93 | fi 94 | 95 | EXPANDED_OUTPUT=$(readlink -e $OUTPUT_DIR) 96 | if [[ $? != 0 ]] ; then 97 | echo "Error: File not found $OUTPUT_DIR"; exit 1; 98 | fi 99 | 100 | 101 | FASTA_DIRNAME=$(dirname "$EXPANDED_FASTA") 102 | FASTA_FILENAME=$(basename "$EXPANDED_FASTA") 103 | 104 | # this only needs set one time, but gives a misleading error message if not done 105 | #gcloud auth configure-docker us-east4-docker.pkg.dev 106 | 107 | if [[ ${CONTAINER_ENGINE} == "docker" ]] 108 | then 109 | $DOCKER pull $DOCKER_IMAGE 110 | CONTAINER=run_av_screen_x 111 | 112 | function finish { 113 | $DOCKER stop $CONTAINER 114 | $DOCKER rm $CONTAINER 115 | } 116 | trap finish EXIT 117 | 118 | $DOCKER run --rm --init --name $CONTAINER --user "$(id -u):$(id -g)" -v $FASTA_DIRNAME:/sample-volume/ \ 119 | -v $EXPANDED_OUTPUT:/output-volume/ $DOCKER_IMAGE \ 120 | /app/fcs/bin/av_screen_x -o /output-volume/ $TAX /sample-volume/$FASTA_FILENAME $DEBUG 121 | 122 | elif [[ ${CONTAINER_ENGINE} == "singularity" ]] 123 | then 124 | if [[ -n "$SINGULARITY_IMAGE" ]] 125 | then 126 | singularity run $CONTAINER --bind $FASTA_DIRNAME:/sample-volume/ \ 127 | --bind $EXPANDED_OUTPUT:/output-volume/ $SINGULARITY_IMAGE \ 128 | /app/fcs/bin/av_screen_x -o /output-volume/ $TAX /sample-volume/$FASTA_FILENAME $DEBUG 129 | else 130 | echo "--image is required when specifying --container-engine singularity" 131 | fi 132 | else 133 | echo "No container engine ${CONTAINER_ENGINE}" 134 | fi 135 | -------------------------------------------------------------------------------- /examples/FCS_combo_test.fcs_adaptor_report.txt: -------------------------------------------------------------------------------- 1 | #accession length action range name 2 | seq_00001 230276 ACTION_TRIM 1..58 CONTAMINATION_SOURCE_TYPE_ADAPTOR:NGB00360.1:Illumina PCR Primer 3 | seq_00002 813242 ACTION_TRIM 1..58 CONTAMINATION_SOURCE_TYPE_ADAPTOR:NGB00360.1:Illumina PCR Primer 4 | seq_00003 316678 ACTION_TRIM 1..58 CONTAMINATION_SOURCE_TYPE_ADAPTOR:NGB00360.1:Illumina PCR Primer 5 | seq_00004 1531991 ACTION_TRIM 1..58 CONTAMINATION_SOURCE_TYPE_ADAPTOR:NGB00360.1:Illumina PCR Primer 6 | seq_00005 576932 ACTION_TRIM 1..58 CONTAMINATION_SOURCE_TYPE_ADAPTOR:NGB00360.1:Illumina PCR Primer 7 | seq_00006 270219 ACTION_TRIM 100001..100058 CONTAMINATION_SOURCE_TYPE_ADAPTOR:NGB00360.1:Illumina PCR Primer 8 | seq_00007 1090998 ACTION_TRIM 100001..100058 CONTAMINATION_SOURCE_TYPE_ADAPTOR:NGB00360.1:Illumina PCR Primer 9 | seq_00008 562701 ACTION_TRIM 100001..100058 CONTAMINATION_SOURCE_TYPE_ADAPTOR:NGB00360.1:Illumina PCR Primer 10 | seq_00009 439946 ACTION_TRIM 100001..100058 CONTAMINATION_SOURCE_TYPE_ADAPTOR:NGB00360.1:Illumina PCR Primer 11 | seq_00010 745809 ACTION_TRIM 100001..100058 CONTAMINATION_SOURCE_TYPE_ADAPTOR:NGB00360.1:Illumina PCR Primer 12 | seq_00018 522 ACTION_EXCLUDE CONTAMINATION_SOURCE_TYPE_ADAPTOR:NGB00360.1:Illumina PCR Primer 13 | -------------------------------------------------------------------------------- /examples/FCS_combo_test.fcs_gx_report.txt: -------------------------------------------------------------------------------- 1 | ##[["FCS genome report", 2, 1], {"git-rev": "v0.5.2", "run-date": "Thu Apr 4 13:48:05 2024", "db": {"build-date": "2023-01-24", "seqs": 3025824, "Gbp": 709.264}, "run-info": {"agg-cvg": 0.999888, "asserted-div": "fung:budding yeasts", "inferred-primary-divs": ["fung:budding yeasts", "fung:ascomycetes"], "corrected-primary-divs": ["fung:budding yeasts", "fung:ascomycetes"], "genome-hash": "dec361901f6aaa92"}}] 2 | #seq_id start_pos end_pos seq_len action div agg_cont_cov top_tax_name 3 | seq_00011 1 908 667816 TRIM anml:primates 100 Homo sapiens 4 | seq_00012 100011 100963 1079187 FIX anml:primates 100 Homo sapiens 5 | seq_00013 1 963 925431 TRIM prok:g-proteobacteria 100 Pseudomonas aeruginosa 6 | seq_00014 100011 100979 785343 FIX prok:g-proteobacteria 100 Pseudomonas paraeruginosa 7 | seq_00019 1 1000 1000 EXCLUDE anml:primates 100 Homo sapiens 8 | seq_00020 1 1000 1000 EXCLUDE anml:primates 100 Homo sapiens 9 | seq_00021 1 1000 1000 EXCLUDE anml:primates 99 Macaca fascicularis 10 | seq_00022 1 1000 1000 EXCLUDE anml:primates 100 Homo sapiens 11 | seq_00023 1 1000 1000 EXCLUDE anml:primates 100 Homo sapiens 12 | seq_00024 1 1000 1000 EXCLUDE anml:primates 100 Homo sapiens 13 | seq_00025 1 1000 1000 EXCLUDE anml:primates 100 Homo sapiens 14 | seq_00026 1 1000 1000 EXCLUDE anml:primates 100 Homo sapiens 15 | seq_00027 1 1000 1000 EXCLUDE anml:primates 100 Homo sapiens 16 | seq_00028 1 1000 1000 EXCLUDE anml:primates 100 Homo sapiens 17 | seq_00029 1 1000 1000 EXCLUDE anml:primates 100 Homo sapiens 18 | seq_00030 1 1000 1000 EXCLUDE anml:primates 100 Homo sapiens 19 | seq_00031 1 1000 1000 EXCLUDE anml:primates 100 Homo sapiens 20 | seq_00032 1 1000 1000 EXCLUDE anml:primates 100 Homo sapiens 21 | seq_00033 1 1000 1000 EXCLUDE anml:primates 100 Homo sapiens 22 | seq_00034 1 1000 1000 EXCLUDE anml:primates 100 Homo sapiens 23 | seq_00035 1 1000 1000 EXCLUDE anml:primates 100 Homo sapiens 24 | seq_00036 1 1000 1000 EXCLUDE anml:primates 100 Homo sapiens 25 | seq_00037 1 1000 1000 EXCLUDE anml:primates 100 Homo sapiens 26 | seq_00038 1 1000 1000 EXCLUDE anml:primates 100 Homo sapiens 27 | seq_00039 1 1000 1000 EXCLUDE anml:primates 100 Homo sapiens 28 | seq_00040 1 1000 1000 EXCLUDE anml:primates 100 Homo sapiens 29 | seq_00041 1 1000 1000 EXCLUDE anml:primates 92 Homo sapiens 30 | seq_00042 1 1000 1000 EXCLUDE anml:primates 100 Homo sapiens 31 | seq_00043 1 1000 1000 EXCLUDE anml:primates 100 Homo sapiens 32 | seq_00044 1 1000 1000 EXCLUDE anml:primates 100 Homo sapiens 33 | seq_00045 1 1000 1000 EXCLUDE anml:primates 81 Homo sapiens 34 | seq_00046 1 1000 1000 EXCLUDE anml:primates 100 Homo sapiens 35 | seq_00047 1 1000 1000 EXCLUDE anml:primates 100 Homo sapiens 36 | seq_00048 1 1000 1000 EXCLUDE anml:primates 100 Homo sapiens 37 | seq_00049 1 1000 1000 EXCLUDE anml:primates 100 Macaca fascicularis 38 | seq_00050 1 1000 1000 EXCLUDE anml:primates 100 Homo sapiens 39 | seq_00051 1 1000 1000 EXCLUDE anml:primates 100 Homo sapiens 40 | seq_00052 1 1000 1000 EXCLUDE anml:primates 100 Homo sapiens 41 | seq_00053 1 1000 1000 EXCLUDE anml:primates 100 Homo sapiens 42 | seq_00054 1 1000 1000 EXCLUDE anml:primates 100 Homo sapiens 43 | seq_00055 1 1000 1000 EXCLUDE anml:primates 100 Homo sapiens 44 | seq_00056 1 1000 1000 EXCLUDE anml:primates 100 Homo sapiens 45 | seq_00057 1 1000 1000 EXCLUDE anml:primates 100 Homo sapiens 46 | seq_00058 1 1000 1000 EXCLUDE anml:primates 100 Homo sapiens 47 | seq_00059 1 1000 1000 EXCLUDE anml:primates 100 Homo sapiens 48 | seq_00060 1 1000 1000 EXCLUDE anml:primates 100 Homo sapiens 49 | seq_00061 1 1000 1000 EXCLUDE anml:primates 100 Homo sapiens 50 | seq_00062 1 1000 1000 EXCLUDE anml:primates 100 Homo sapiens 51 | seq_00063 1 1000 1000 EXCLUDE anml:primates 100 Homo sapiens 52 | seq_00064 1 1000 1000 EXCLUDE anml:primates 100 Homo sapiens 53 | seq_00065 1 1000 1000 EXCLUDE anml:primates 100 Homo sapiens 54 | seq_00066 1 1000 1000 EXCLUDE anml:primates 100 Macaca fascicularis 55 | seq_00067 1 1000 1000 EXCLUDE anml:primates 100 Homo sapiens 56 | seq_00068 1 1000 1000 EXCLUDE anml:primates 100 Homo sapiens 57 | seq_00069 1 1000 1000 EXCLUDE anml:primates 100 Homo sapiens 58 | seq_00070 1 1000 1000 EXCLUDE anml:primates 100 Homo sapiens 59 | seq_00071 1 1000 1000 EXCLUDE anml:primates 100 Homo sapiens 60 | seq_00072 1 1000 1000 EXCLUDE anml:primates 100 Homo sapiens 61 | seq_00073 1 1000 1000 EXCLUDE anml:primates 100 Homo sapiens 62 | seq_00074 1 1000 1000 EXCLUDE anml:primates 100 Homo sapiens 63 | seq_00075 1 1000 1000 EXCLUDE anml:primates 100 Homo sapiens 64 | seq_00076 1 1000 1000 EXCLUDE anml:primates 100 Macaca fascicularis 65 | seq_00077 1 1000 1000 EXCLUDE anml:primates 100 Homo sapiens 66 | seq_00078 1 1000 1000 EXCLUDE anml:primates 100 Homo sapiens 67 | seq_00079 1 1000 1000 EXCLUDE anml:primates 98 Homo sapiens 68 | seq_00080 1 1000 1000 EXCLUDE anml:primates 100 Homo sapiens 69 | seq_00081 1 1000 1000 EXCLUDE anml:primates 100 Homo sapiens 70 | seq_00082 1 1000 1000 EXCLUDE anml:primates 100 Homo sapiens 71 | seq_00083 1 1000 1000 EXCLUDE anml:primates 100 Homo sapiens 72 | seq_00084 1 1000 1000 EXCLUDE anml:primates 100 Homo sapiens 73 | seq_00085 1 1000 1000 EXCLUDE anml:primates 100 Homo sapiens 74 | seq_00086 1 1000 1000 EXCLUDE anml:primates 100 Homo sapiens 75 | seq_00087 1 1000 1000 EXCLUDE anml:primates 100 Homo sapiens 76 | seq_00088 1 1000 1000 EXCLUDE anml:primates 100 Homo sapiens 77 | seq_00089 1 1000 1000 EXCLUDE anml:primates 100 Homo sapiens 78 | seq_00090 1 1000 1000 EXCLUDE anml:primates 100 Homo sapiens 79 | seq_00091 1 1000 1000 EXCLUDE anml:primates 100 Homo sapiens 80 | seq_00092 1 1000 1000 EXCLUDE anml:primates 100 Homo sapiens 81 | seq_00093 1 1000 1000 EXCLUDE anml:primates 100 Homo sapiens 82 | seq_00094 1 1000 1000 EXCLUDE anml:primates 100 Homo sapiens 83 | seq_00095 1 1000 1000 EXCLUDE anml:primates 100 Homo sapiens 84 | seq_00096 1 1000 1000 EXCLUDE anml:primates 100 Homo sapiens 85 | seq_00097 1 1000 1000 EXCLUDE anml:primates 100 Homo sapiens 86 | seq_00098 1 1000 1000 EXCLUDE anml:primates 100 Homo sapiens 87 | seq_00099 1 1000 1000 EXCLUDE anml:primates 100 Homo sapiens 88 | seq_00100 1 1000 1000 EXCLUDE anml:primates 100 Homo sapiens 89 | seq_00101 1 1000 1000 EXCLUDE anml:primates 100 Homo sapiens 90 | seq_00102 1 1000 1000 EXCLUDE anml:primates 100 Homo sapiens 91 | seq_00103 1 1000 1000 EXCLUDE anml:primates 100 Homo sapiens 92 | seq_00104 1 1000 1000 EXCLUDE anml:primates 100 Homo sapiens 93 | seq_00105 1 1000 1000 EXCLUDE anml:primates 100 Homo sapiens 94 | seq_00106 1 1000 1000 EXCLUDE anml:primates 100 Homo sapiens 95 | seq_00107 1 1000 1000 EXCLUDE anml:primates 100 Homo sapiens 96 | seq_00108 1 1000 1000 EXCLUDE anml:primates 100 Homo sapiens 97 | seq_00109 1 1000 1000 EXCLUDE anml:primates 99 Macaca fascicularis 98 | seq_00110 1 1000 1000 EXCLUDE anml:primates 100 Homo sapiens 99 | seq_00111 1 1000 1000 EXCLUDE anml:primates 100 Homo sapiens 100 | seq_00112 1 1000 1000 EXCLUDE anml:primates 100 Homo sapiens 101 | seq_00113 1 1000 1000 EXCLUDE anml:primates 100 Homo sapiens 102 | seq_00114 1 1000 1000 EXCLUDE anml:primates 100 Homo sapiens 103 | seq_00115 1 1000 1000 EXCLUDE anml:primates 100 Homo sapiens 104 | seq_00116 1 1000 1000 EXCLUDE anml:primates 100 Macaca fascicularis 105 | seq_00117 1 1000 1000 EXCLUDE anml:primates 100 Homo sapiens 106 | seq_00118 1 1000 1000 EXCLUDE anml:primates 100 Homo sapiens 107 | seq_00119 1 1000 1000 EXCLUDE anml:primates 100 Macaca fascicularis 108 | seq_00120 1 1000 1000 EXCLUDE anml:primates 100 Homo sapiens 109 | seq_00121 1 1000 1000 EXCLUDE anml:primates 100 Homo sapiens 110 | seq_00122 1 1000 1000 EXCLUDE anml:primates 100 Homo sapiens 111 | seq_00123 1 1000 1000 EXCLUDE anml:primates 100 Homo sapiens 112 | seq_00124 1 1000 1000 EXCLUDE anml:primates 100 Homo sapiens 113 | seq_00125 1 1000 1000 EXCLUDE anml:primates 100 Homo sapiens 114 | seq_00126 1 1000 1000 EXCLUDE anml:primates 100 Homo sapiens 115 | seq_00127 1 1000 1000 EXCLUDE anml:primates 98 Homo sapiens 116 | seq_00128 1 1000 1000 EXCLUDE anml:primates 100 Homo sapiens 117 | seq_00129 1 1000 1000 EXCLUDE anml:primates 100 Homo sapiens 118 | seq_00130 1 1000 1000 EXCLUDE anml:primates 100 Homo sapiens 119 | seq_00131 1 1000 1000 EXCLUDE anml:primates 98 Homo sapiens 120 | seq_00132 1 1000 1000 EXCLUDE anml:primates 100 Homo sapiens 121 | seq_00133 1 1000 1000 EXCLUDE anml:primates 100 Homo sapiens 122 | seq_00134 1 1000 1000 EXCLUDE anml:primates 100 Homo sapiens 123 | seq_00135 1 1000 1000 EXCLUDE anml:primates 100 Homo sapiens 124 | seq_00136 1 1000 1000 EXCLUDE anml:primates 100 Homo sapiens 125 | seq_00137 1 1000 1000 EXCLUDE anml:primates 100 Homo sapiens 126 | seq_00138 1 1000 1000 EXCLUDE anml:primates 100 Homo sapiens 127 | seq_00139 1 1000 1000 EXCLUDE anml:primates 100 Homo sapiens 128 | seq_00140 1 1000 1000 EXCLUDE anml:primates 99 Homo sapiens 129 | seq_00141 1 1000 1000 EXCLUDE anml:primates 100 Homo sapiens 130 | seq_00142 1 1000 1000 EXCLUDE anml:primates 100 Homo sapiens 131 | seq_00143 1 1000 1000 EXCLUDE anml:primates 99 Homo sapiens 132 | seq_00144 1 1000 1000 EXCLUDE anml:primates 99 Homo sapiens 133 | seq_00145 1 1000 1000 EXCLUDE anml:primates 100 Homo sapiens 134 | seq_00146 1 1000 1000 EXCLUDE anml:primates 100 Homo sapiens 135 | seq_00147 1 1000 1000 EXCLUDE anml:primates 100 Homo sapiens 136 | seq_00148 1 1000 1000 EXCLUDE anml:primates 100 Homo sapiens 137 | seq_00149 1 1000 1000 EXCLUDE anml:primates 100 Homo sapiens 138 | seq_00150 1 1000 1000 EXCLUDE anml:primates 100 Homo sapiens 139 | seq_00151 1 1000 1000 EXCLUDE anml:primates 100 Homo sapiens 140 | seq_00152 1 1000 1000 EXCLUDE anml:primates 100 Homo sapiens 141 | seq_00153 1 1000 1000 EXCLUDE anml:primates 100 Homo sapiens 142 | seq_00154 1 1000 1000 EXCLUDE anml:primates 100 Homo sapiens 143 | seq_00155 1 1000 1000 EXCLUDE anml:primates 100 Homo sapiens 144 | seq_00156 1 1000 1000 EXCLUDE anml:primates 100 Homo sapiens 145 | seq_00157 1 1000 1000 EXCLUDE anml:primates 100 Homo sapiens 146 | seq_00158 1 1000 1000 EXCLUDE anml:primates 100 Homo sapiens 147 | seq_00159 1 1000 1000 EXCLUDE anml:primates 100 Homo sapiens 148 | seq_00160 1 1000 1000 EXCLUDE anml:primates 100 Homo sapiens 149 | seq_00161 1 1000 1000 EXCLUDE anml:primates 100 Homo sapiens 150 | seq_00162 1 1000 1000 EXCLUDE anml:primates 100 Homo sapiens 151 | seq_00163 1 1000 1000 EXCLUDE anml:primates 100 Homo sapiens 152 | seq_00164 1 1000 1000 EXCLUDE anml:primates 100 Homo sapiens 153 | seq_00165 1 1000 1000 EXCLUDE anml:primates 100 Homo sapiens 154 | seq_00166 1 1000 1000 EXCLUDE anml:primates 100 Homo sapiens 155 | seq_00167 1 1000 1000 EXCLUDE anml:primates 100 Homo sapiens 156 | seq_00168 1 1000 1000 EXCLUDE anml:primates 100 Homo sapiens 157 | seq_00169 1 1000 1000 EXCLUDE anml:primates 100 Homo sapiens 158 | seq_00170 1 1000 1000 EXCLUDE anml:primates 100 Homo sapiens 159 | seq_00171 1 1000 1000 EXCLUDE anml:primates 100 Homo sapiens 160 | seq_00172 1 1000 1000 EXCLUDE anml:primates 100 Homo sapiens 161 | seq_00173 1 1000 1000 EXCLUDE anml:primates 99 Macaca fascicularis 162 | seq_00174 1 1000 1000 EXCLUDE anml:primates 100 Homo sapiens 163 | seq_00175 1 1000 1000 EXCLUDE anml:primates 100 Homo sapiens 164 | seq_00176 1 1000 1000 EXCLUDE anml:primates 100 Homo sapiens 165 | seq_00177 1 1000 1000 EXCLUDE anml:primates 100 Homo sapiens 166 | seq_00178 1 1000 1000 EXCLUDE anml:primates 100 Homo sapiens 167 | seq_00179 1 1000 1000 EXCLUDE anml:primates 100 Homo sapiens 168 | seq_00180 1 1000 1000 EXCLUDE anml:primates 100 Homo sapiens 169 | seq_00181 1 1000 1000 EXCLUDE anml:primates 100 Homo sapiens 170 | seq_00182 1 1000 1000 EXCLUDE anml:primates 100 Homo sapiens 171 | seq_00183 1 1000 1000 EXCLUDE anml:primates 100 Homo sapiens 172 | seq_00184 1 1000 1000 EXCLUDE anml:primates 100 Homo sapiens 173 | seq_00185 1 1000 1000 EXCLUDE anml:primates 100 Homo sapiens 174 | seq_00186 1 1000 1000 EXCLUDE anml:primates 100 Homo sapiens 175 | seq_00187 1 1000 1000 EXCLUDE anml:primates 100 Homo sapiens 176 | seq_00188 1 1000 1000 EXCLUDE anml:primates 100 Homo sapiens 177 | seq_00189 1 1000 1000 EXCLUDE anml:primates 100 Homo sapiens 178 | seq_00190 1 1000 1000 EXCLUDE anml:primates 100 Homo sapiens 179 | seq_00191 1 1000 1000 EXCLUDE anml:primates 100 Homo sapiens 180 | seq_00192 1 1000 1000 EXCLUDE anml:primates 100 Homo sapiens 181 | seq_00193 1 1000 1000 EXCLUDE anml:primates 100 Homo sapiens 182 | seq_00194 1 1000 1000 EXCLUDE anml:primates 100 Homo sapiens 183 | seq_00195 1 1000 1000 EXCLUDE anml:primates 100 Homo sapiens 184 | seq_00196 1 1000 1000 EXCLUDE anml:primates 100 Homo sapiens 185 | seq_00197 1 1000 1000 EXCLUDE anml:primates 100 Homo sapiens 186 | seq_00198 1 1000 1000 EXCLUDE anml:primates 100 Homo sapiens 187 | seq_00199 1 1000 1000 EXCLUDE anml:primates 100 Homo sapiens 188 | seq_00200 1 1000 1000 EXCLUDE anml:primates 100 Homo sapiens 189 | seq_00201 1 1000 1000 EXCLUDE anml:primates 100 Homo sapiens 190 | seq_00202 1 1000 1000 EXCLUDE anml:primates 96 Homo sapiens 191 | seq_00203 1 1000 1000 EXCLUDE anml:primates 100 Macaca fascicularis 192 | seq_00204 1 1000 1000 EXCLUDE anml:primates 100 Homo sapiens 193 | seq_00205 1 1000 1000 EXCLUDE anml:primates 100 Homo sapiens 194 | seq_00206 1 1000 1000 EXCLUDE anml:primates 100 Homo sapiens 195 | seq_00207 1 1000 1000 EXCLUDE anml:primates 100 Homo sapiens 196 | seq_00208 1 1000 1000 EXCLUDE anml:primates 100 Homo sapiens 197 | seq_00209 1 1000 1000 EXCLUDE anml:primates 100 Homo sapiens 198 | seq_00210 1 1000 1000 EXCLUDE anml:primates 100 Homo sapiens 199 | seq_00211 1 1000 1000 EXCLUDE anml:primates 100 Homo sapiens 200 | seq_00212 1 1000 1000 EXCLUDE anml:primates 98 Homo sapiens 201 | seq_00213 1 1000 1000 EXCLUDE anml:primates 100 Homo sapiens 202 | seq_00214 1 1000 1000 EXCLUDE anml:primates 100 Homo sapiens 203 | seq_00215 1 1000 1000 EXCLUDE anml:primates 100 Homo sapiens 204 | seq_00216 1 1000 1000 EXCLUDE anml:primates 100 Homo sapiens 205 | seq_00217 1 1000 1000 EXCLUDE anml:primates 100 Homo sapiens 206 | seq_00218 1 1000 1000 EXCLUDE anml:primates 100 Homo sapiens 207 | seq_00219 1 1000 1000 EXCLUDE prok:g-proteobacteria 100 Pseudomonas aeruginosa 208 | seq_00220 1 1000 1000 EXCLUDE prok:g-proteobacteria 100 Pseudomonas paraeruginosa 209 | seq_00221 1 1000 1000 EXCLUDE prok:g-proteobacteria 100 Pseudomonas aeruginosa 210 | seq_00222 1 1000 1000 EXCLUDE prok:g-proteobacteria 100 Pseudomonas aeruginosa 211 | seq_00223 1 1000 1000 EXCLUDE prok:g-proteobacteria 100 Pseudomonas paraeruginosa 212 | seq_00224 1 1000 1000 EXCLUDE prok:g-proteobacteria 100 Pseudomonas aeruginosa 213 | seq_00225 1 1000 1000 EXCLUDE prok:g-proteobacteria 100 Pseudomonas aeruginosa 214 | seq_00226 1 1000 1000 EXCLUDE prok:g-proteobacteria 100 Pseudomonas aeruginosa 215 | seq_00227 1 1000 1000 EXCLUDE prok:g-proteobacteria 100 Pseudomonas aeruginosa 216 | seq_00228 1 1000 1000 EXCLUDE prok:g-proteobacteria 100 Pseudomonas aeruginosa 217 | seq_00229 1 1000 1000 EXCLUDE prok:g-proteobacteria 100 Pseudomonas paraeruginosa 218 | seq_00230 1 1000 1000 EXCLUDE prok:g-proteobacteria 100 Pseudomonas aeruginosa 219 | seq_00231 1 1000 1000 EXCLUDE prok:g-proteobacteria 100 Pseudomonas aeruginosa 220 | seq_00232 1 1000 1000 EXCLUDE prok:g-proteobacteria 100 Pseudomonas aeruginosa 221 | seq_00233 1 1000 1000 EXCLUDE prok:g-proteobacteria 100 Pseudomonas paraeruginosa 222 | seq_00234 1 1000 1000 EXCLUDE prok:g-proteobacteria 100 Pseudomonas paraeruginosa 223 | seq_00235 1 1000 1000 EXCLUDE prok:g-proteobacteria 100 Pseudomonas aeruginosa 224 | seq_00236 1 1000 1000 EXCLUDE prok:g-proteobacteria 100 Pseudomonas aeruginosa 225 | seq_00237 1 1000 1000 EXCLUDE prok:g-proteobacteria 100 Pseudomonas paraeruginosa 226 | seq_00238 1 1000 1000 EXCLUDE prok:g-proteobacteria 100 Pseudomonas aeruginosa 227 | seq_00239 1 1000 1000 EXCLUDE prok:g-proteobacteria 100 Pseudomonas aeruginosa 228 | seq_00240 1 1000 1000 EXCLUDE prok:g-proteobacteria 100 Pseudomonas aeruginosa 229 | seq_00241 1 1000 1000 EXCLUDE prok:g-proteobacteria 100 Pseudomonas aeruginosa 230 | seq_00242 1 1000 1000 EXCLUDE prok:g-proteobacteria 100 Pseudomonas aeruginosa 231 | seq_00243 1 1000 1000 EXCLUDE prok:g-proteobacteria 100 Pseudomonas aeruginosa 232 | seq_00244 1 1000 1000 EXCLUDE prok:g-proteobacteria 100 Pseudomonas aeruginosa 233 | seq_00245 1 1000 1000 EXCLUDE prok:g-proteobacteria 100 Pseudomonas paraeruginosa 234 | seq_00246 1 1000 1000 EXCLUDE prok:g-proteobacteria 100 Pseudomonas aeruginosa 235 | seq_00247 1 1000 1000 EXCLUDE prok:g-proteobacteria 100 Pseudomonas aeruginosa 236 | seq_00248 1 1000 1000 EXCLUDE prok:g-proteobacteria 100 Pseudomonas aeruginosa 237 | seq_00249 1 1000 1000 EXCLUDE prok:g-proteobacteria 100 Pseudomonas aeruginosa 238 | seq_00250 1 1000 1000 EXCLUDE prok:g-proteobacteria 100 Pseudomonas aeruginosa 239 | seq_00251 1 1000 1000 EXCLUDE prok:g-proteobacteria 100 Pseudomonas aeruginosa 240 | seq_00252 1 1000 1000 EXCLUDE prok:g-proteobacteria 100 Pseudomonas aeruginosa 241 | seq_00253 1 1000 1000 EXCLUDE prok:g-proteobacteria 100 Pseudomonas aeruginosa 242 | seq_00254 1 1000 1000 EXCLUDE prok:g-proteobacteria 100 Pseudomonas aeruginosa 243 | seq_00255 1 1000 1000 EXCLUDE prok:g-proteobacteria 100 Pseudomonas aeruginosa 244 | seq_00256 1 1000 1000 EXCLUDE prok:g-proteobacteria 100 Pseudomonas aeruginosa 245 | seq_00257 1 1000 1000 EXCLUDE prok:g-proteobacteria 100 Pseudomonas aeruginosa 246 | seq_00258 1 1000 1000 EXCLUDE prok:g-proteobacteria 100 Pseudomonas aeruginosa 247 | seq_00259 1 1000 1000 EXCLUDE prok:g-proteobacteria 100 Pseudomonas aeruginosa 248 | seq_00260 1 1000 1000 EXCLUDE prok:g-proteobacteria 100 Pseudomonas aeruginosa 249 | seq_00261 1 1000 1000 EXCLUDE prok:g-proteobacteria 100 Pseudomonas aeruginosa 250 | seq_00262 1 1000 1000 EXCLUDE prok:g-proteobacteria 100 Pseudomonas aeruginosa 251 | seq_00263 1 1000 1000 EXCLUDE prok:g-proteobacteria 100 Pseudomonas paraeruginosa 252 | seq_00264 1 1000 1000 EXCLUDE prok:g-proteobacteria 100 Pseudomonas aeruginosa 253 | seq_00265 1 1000 1000 EXCLUDE prok:g-proteobacteria 100 Pseudomonas aeruginosa 254 | seq_00266 1 1000 1000 EXCLUDE prok:g-proteobacteria 100 Pseudomonas aeruginosa 255 | seq_00267 1 1000 1000 EXCLUDE prok:g-proteobacteria 100 Pseudomonas aeruginosa 256 | seq_00268 1 1000 1000 EXCLUDE prok:g-proteobacteria 100 Pseudomonas aeruginosa 257 | seq_00269 1 1000 1000 EXCLUDE prok:g-proteobacteria 100 Pseudomonas aeruginosa 258 | seq_00270 1 1000 1000 EXCLUDE prok:g-proteobacteria 100 Pseudomonas paraeruginosa 259 | seq_00271 1 1000 1000 EXCLUDE prok:g-proteobacteria 100 Pseudomonas aeruginosa 260 | seq_00272 1 1000 1000 EXCLUDE prok:g-proteobacteria 100 Pseudomonas paraeruginosa 261 | seq_00273 1 1000 1000 EXCLUDE prok:g-proteobacteria 100 Pseudomonas aeruginosa 262 | seq_00274 1 1000 1000 EXCLUDE prok:g-proteobacteria 100 Pseudomonas aeruginosa 263 | seq_00275 1 1000 1000 EXCLUDE prok:g-proteobacteria 100 Pseudomonas aeruginosa 264 | seq_00276 1 1000 1000 EXCLUDE prok:g-proteobacteria 100 Pseudomonas aeruginosa 265 | seq_00277 1 1000 1000 EXCLUDE prok:g-proteobacteria 100 Pseudomonas aeruginosa 266 | seq_00278 1 1000 1000 EXCLUDE prok:g-proteobacteria 100 Pseudomonas aeruginosa 267 | seq_00279 1 1000 1000 EXCLUDE prok:g-proteobacteria 100 Pseudomonas paraeruginosa 268 | seq_00280 1 1000 1000 EXCLUDE prok:g-proteobacteria 100 Pseudomonas aeruginosa 269 | seq_00281 1 1000 1000 EXCLUDE prok:g-proteobacteria 100 Pseudomonas aeruginosa 270 | seq_00282 1 1000 1000 EXCLUDE prok:g-proteobacteria 100 Pseudomonas aeruginosa 271 | seq_00283 1 1000 1000 EXCLUDE prok:g-proteobacteria 100 Pseudomonas aeruginosa 272 | seq_00284 1 1000 1000 EXCLUDE prok:g-proteobacteria 100 Pseudomonas aeruginosa 273 | seq_00285 1 1000 1000 EXCLUDE prok:g-proteobacteria 100 Pseudomonas aeruginosa 274 | seq_00286 1 1000 1000 EXCLUDE prok:g-proteobacteria 100 Pseudomonas aeruginosa 275 | seq_00287 1 1000 1000 EXCLUDE prok:g-proteobacteria 100 Pseudomonas aeruginosa 276 | seq_00288 1 1000 1000 EXCLUDE prok:g-proteobacteria 100 Pseudomonas aeruginosa 277 | seq_00289 1 1000 1000 EXCLUDE prok:g-proteobacteria 100 Pseudomonas aeruginosa 278 | seq_00290 1 1000 1000 EXCLUDE prok:g-proteobacteria 100 Pseudomonas aeruginosa 279 | seq_00291 1 1000 1000 EXCLUDE prok:g-proteobacteria 100 Pseudomonas aeruginosa 280 | seq_00292 1 1000 1000 EXCLUDE prok:g-proteobacteria 100 Pseudomonas aeruginosa 281 | seq_00293 1 1000 1000 EXCLUDE prok:g-proteobacteria 100 Pseudomonas aeruginosa 282 | seq_00294 1 1000 1000 EXCLUDE prok:g-proteobacteria 100 Pseudomonas aeruginosa 283 | seq_00295 1 1000 1000 EXCLUDE prok:g-proteobacteria 100 Pseudomonas aeruginosa 284 | seq_00296 1 1000 1000 EXCLUDE prok:g-proteobacteria 100 Pseudomonas aeruginosa 285 | seq_00297 1 1000 1000 EXCLUDE prok:g-proteobacteria 100 Pseudomonas aeruginosa 286 | seq_00298 1 1000 1000 EXCLUDE prok:g-proteobacteria 100 Pseudomonas aeruginosa 287 | seq_00299 1 1000 1000 EXCLUDE prok:g-proteobacteria 100 Pseudomonas aeruginosa 288 | seq_00300 1 1000 1000 EXCLUDE prok:g-proteobacteria 100 Pseudomonas aeruginosa 289 | seq_00301 1 1000 1000 EXCLUDE prok:g-proteobacteria 100 Pseudomonas aeruginosa 290 | seq_00302 1 1000 1000 EXCLUDE prok:g-proteobacteria 100 Pseudomonas aeruginosa 291 | seq_00303 1 1000 1000 EXCLUDE prok:g-proteobacteria 100 Pseudomonas aeruginosa 292 | seq_00304 1 1000 1000 EXCLUDE prok:g-proteobacteria 100 Pseudomonas aeruginosa 293 | seq_00305 1 1000 1000 EXCLUDE prok:g-proteobacteria 100 Pseudomonas aeruginosa 294 | seq_00306 1 1000 1000 EXCLUDE prok:g-proteobacteria 100 Pseudomonas aeruginosa 295 | seq_00307 1 1000 1000 EXCLUDE prok:g-proteobacteria 100 Pseudomonas aeruginosa 296 | seq_00308 1 1000 1000 EXCLUDE prok:g-proteobacteria 100 Pseudomonas aeruginosa 297 | seq_00309 1 1000 1000 EXCLUDE prok:g-proteobacteria 100 Pseudomonas aeruginosa 298 | seq_00310 1 1000 1000 EXCLUDE prok:g-proteobacteria 100 Pseudomonas aeruginosa 299 | seq_00311 1 1000 1000 EXCLUDE prok:g-proteobacteria 100 Pseudomonas aeruginosa 300 | seq_00312 1 1000 1000 EXCLUDE prok:g-proteobacteria 100 Pseudomonas aeruginosa 301 | seq_00313 1 1000 1000 EXCLUDE prok:g-proteobacteria 100 Pseudomonas aeruginosa 302 | seq_00314 1 1000 1000 EXCLUDE prok:g-proteobacteria 100 Pseudomonas paraeruginosa 303 | seq_00315 1 1000 1000 EXCLUDE prok:g-proteobacteria 100 Pseudomonas aeruginosa 304 | seq_00316 1 1000 1000 EXCLUDE prok:g-proteobacteria 100 Pseudomonas aeruginosa 305 | seq_00317 1 1000 1000 EXCLUDE prok:g-proteobacteria 100 Pseudomonas aeruginosa 306 | seq_00318 1 1000 1000 EXCLUDE prok:g-proteobacteria 100 Pseudomonas aeruginosa 307 | seq_00319 1 1000 1000 EXCLUDE prok:g-proteobacteria 100 Pseudomonas aeruginosa 308 | seq_00320 1 1000 1000 EXCLUDE prok:g-proteobacteria 100 Pseudomonas aeruginosa 309 | seq_00321 1 1000 1000 EXCLUDE prok:g-proteobacteria 100 Pseudomonas aeruginosa 310 | seq_00322 1 1000 1000 EXCLUDE prok:g-proteobacteria 100 Pseudomonas aeruginosa 311 | seq_00323 1 1000 1000 EXCLUDE prok:g-proteobacteria 100 Pseudomonas aeruginosa 312 | seq_00324 1 1000 1000 EXCLUDE prok:g-proteobacteria 100 Pseudomonas aeruginosa 313 | seq_00325 1 1000 1000 EXCLUDE prok:g-proteobacteria 100 Pseudomonas aeruginosa 314 | seq_00326 1 1000 1000 EXCLUDE prok:g-proteobacteria 100 Pseudomonas aeruginosa 315 | seq_00327 1 1000 1000 EXCLUDE prok:g-proteobacteria 100 Pseudomonas aeruginosa 316 | seq_00328 1 1000 1000 EXCLUDE prok:g-proteobacteria 100 Pseudomonas paraeruginosa 317 | seq_00329 1 1000 1000 EXCLUDE prok:g-proteobacteria 100 Pseudomonas aeruginosa 318 | seq_00330 1 1000 1000 EXCLUDE prok:g-proteobacteria 100 Pseudomonas aeruginosa 319 | seq_00331 1 1000 1000 EXCLUDE prok:g-proteobacteria 100 Pseudomonas aeruginosa 320 | seq_00332 1 1000 1000 EXCLUDE prok:g-proteobacteria 100 Pseudomonas aeruginosa 321 | seq_00333 1 1000 1000 EXCLUDE prok:g-proteobacteria 100 Pseudomonas aeruginosa 322 | seq_00334 1 1000 1000 EXCLUDE prok:g-proteobacteria 100 Pseudomonas aeruginosa 323 | seq_00335 1 1000 1000 EXCLUDE prok:g-proteobacteria 100 Pseudomonas aeruginosa 324 | seq_00336 1 1000 1000 EXCLUDE prok:g-proteobacteria 100 Pseudomonas aeruginosa 325 | seq_00337 1 1000 1000 EXCLUDE prok:g-proteobacteria 100 Pseudomonas aeruginosa 326 | seq_00338 1 1000 1000 EXCLUDE prok:g-proteobacteria 100 Pseudomonas paraeruginosa 327 | seq_00339 1 1000 1000 EXCLUDE prok:g-proteobacteria 100 Pseudomonas aeruginosa 328 | seq_00340 1 1000 1000 EXCLUDE prok:g-proteobacteria 100 Pseudomonas aeruginosa 329 | seq_00341 1 1000 1000 EXCLUDE prok:g-proteobacteria 100 Pseudomonas paraeruginosa 330 | seq_00342 1 1000 1000 EXCLUDE prok:g-proteobacteria 100 Pseudomonas aeruginosa 331 | seq_00343 1 1000 1000 EXCLUDE prok:g-proteobacteria 100 Pseudomonas aeruginosa 332 | seq_00344 1 1000 1000 EXCLUDE prok:g-proteobacteria 100 Pseudomonas aeruginosa 333 | seq_00345 1 1000 1000 EXCLUDE prok:g-proteobacteria 100 Pseudomonas aeruginosa 334 | seq_00346 1 1000 1000 EXCLUDE prok:g-proteobacteria 100 Pseudomonas aeruginosa 335 | seq_00347 1 1000 1000 EXCLUDE prok:g-proteobacteria 100 Pseudomonas aeruginosa 336 | seq_00348 1 1000 1000 EXCLUDE prok:g-proteobacteria 100 Pseudomonas aeruginosa 337 | seq_00349 1 1000 1000 EXCLUDE prok:g-proteobacteria 100 Pseudomonas aeruginosa 338 | seq_00350 1 1000 1000 EXCLUDE prok:g-proteobacteria 100 Pseudomonas paraeruginosa 339 | seq_00351 1 1000 1000 EXCLUDE prok:g-proteobacteria 100 Pseudomonas aeruginosa 340 | seq_00352 1 1000 1000 EXCLUDE prok:g-proteobacteria 100 Pseudomonas aeruginosa 341 | seq_00353 1 1000 1000 EXCLUDE prok:g-proteobacteria 100 Pseudomonas aeruginosa 342 | seq_00354 1 1000 1000 EXCLUDE prok:g-proteobacteria 100 Pseudomonas aeruginosa 343 | seq_00355 1 1000 1000 EXCLUDE prok:g-proteobacteria 100 Pseudomonas aeruginosa 344 | seq_00356 1 1000 1000 EXCLUDE prok:g-proteobacteria 100 Pseudomonas aeruginosa 345 | seq_00357 1 1000 1000 EXCLUDE prok:g-proteobacteria 100 Pseudomonas aeruginosa 346 | seq_00358 1 1000 1000 EXCLUDE prok:g-proteobacteria 100 Pseudomonas aeruginosa 347 | seq_00359 1 1000 1000 EXCLUDE prok:g-proteobacteria 100 Pseudomonas aeruginosa 348 | seq_00360 1 1000 1000 EXCLUDE prok:g-proteobacteria 100 Pseudomonas paraeruginosa 349 | seq_00361 1 1000 1000 EXCLUDE prok:g-proteobacteria 100 Pseudomonas aeruginosa 350 | seq_00362 1 1000 1000 EXCLUDE prok:g-proteobacteria 100 Pseudomonas aeruginosa 351 | seq_00363 1 1000 1000 EXCLUDE prok:g-proteobacteria 100 Pseudomonas aeruginosa 352 | seq_00364 1 1000 1000 EXCLUDE prok:g-proteobacteria 100 Pseudomonas aeruginosa 353 | seq_00365 1 1000 1000 EXCLUDE prok:g-proteobacteria 100 Pseudomonas aeruginosa 354 | seq_00366 1 1000 1000 EXCLUDE prok:g-proteobacteria 100 Pseudomonas aeruginosa 355 | seq_00367 1 1000 1000 EXCLUDE prok:g-proteobacteria 100 Pseudomonas paraeruginosa 356 | seq_00368 1 1000 1000 EXCLUDE prok:g-proteobacteria 100 Pseudomonas aeruginosa 357 | seq_00369 1 1000 1000 EXCLUDE prok:g-proteobacteria 100 Pseudomonas aeruginosa 358 | seq_00370 1 1000 1000 EXCLUDE prok:g-proteobacteria 100 Pseudomonas paraeruginosa 359 | seq_00371 1 1000 1000 EXCLUDE prok:g-proteobacteria 100 Pseudomonas paraeruginosa 360 | seq_00372 1 1000 1000 EXCLUDE prok:g-proteobacteria 100 Pseudomonas aeruginosa 361 | seq_00373 1 1000 1000 EXCLUDE prok:g-proteobacteria 100 Pseudomonas paraeruginosa 362 | seq_00374 1 1000 1000 EXCLUDE prok:g-proteobacteria 100 Pseudomonas aeruginosa 363 | seq_00375 1 1000 1000 EXCLUDE prok:g-proteobacteria 100 Pseudomonas aeruginosa 364 | seq_00376 1 1000 1000 EXCLUDE prok:g-proteobacteria 100 Pseudomonas aeruginosa 365 | seq_00377 1 1000 1000 EXCLUDE prok:g-proteobacteria 100 Pseudomonas aeruginosa 366 | seq_00378 1 1000 1000 EXCLUDE prok:g-proteobacteria 100 Pseudomonas aeruginosa 367 | seq_00379 1 1000 1000 EXCLUDE prok:g-proteobacteria 100 Pseudomonas aeruginosa 368 | seq_00380 1 1000 1000 EXCLUDE prok:g-proteobacteria 100 Pseudomonas aeruginosa 369 | seq_00381 1 1000 1000 EXCLUDE prok:g-proteobacteria 100 Pseudomonas aeruginosa 370 | seq_00382 1 1000 1000 EXCLUDE prok:g-proteobacteria 100 Pseudomonas aeruginosa 371 | seq_00383 1 1000 1000 EXCLUDE prok:g-proteobacteria 100 Pseudomonas aeruginosa 372 | seq_00384 1 1000 1000 EXCLUDE prok:g-proteobacteria 100 Pseudomonas aeruginosa 373 | seq_00385 1 1000 1000 EXCLUDE prok:g-proteobacteria 100 Pseudomonas aeruginosa 374 | seq_00386 1 1000 1000 EXCLUDE prok:g-proteobacteria 100 Pseudomonas aeruginosa 375 | seq_00387 1 1000 1000 EXCLUDE prok:g-proteobacteria 100 Pseudomonas aeruginosa 376 | seq_00388 1 1000 1000 EXCLUDE prok:g-proteobacteria 100 Pseudomonas aeruginosa 377 | seq_00389 1 1000 1000 EXCLUDE prok:g-proteobacteria 100 Pseudomonas aeruginosa 378 | seq_00390 1 1000 1000 EXCLUDE prok:g-proteobacteria 100 Pseudomonas aeruginosa 379 | seq_00391 1 1000 1000 EXCLUDE prok:g-proteobacteria 100 Pseudomonas aeruginosa 380 | seq_00392 1 1000 1000 EXCLUDE prok:g-proteobacteria 100 Pseudomonas paraeruginosa 381 | seq_00393 1 1000 1000 EXCLUDE prok:g-proteobacteria 100 Pseudomonas aeruginosa 382 | seq_00394 1 1000 1000 EXCLUDE prok:g-proteobacteria 100 Pseudomonas aeruginosa 383 | seq_00395 1 1000 1000 EXCLUDE prok:g-proteobacteria 100 Pseudomonas aeruginosa 384 | seq_00396 1 1000 1000 EXCLUDE prok:g-proteobacteria 100 Pseudomonas aeruginosa 385 | seq_00397 1 1000 1000 EXCLUDE prok:g-proteobacteria 100 Pseudomonas paraeruginosa 386 | seq_00398 1 1000 1000 EXCLUDE prok:g-proteobacteria 100 Pseudomonas aeruginosa 387 | seq_00399 1 1000 1000 EXCLUDE prok:g-proteobacteria 100 Pseudomonas aeruginosa 388 | seq_00400 1 1000 1000 EXCLUDE prok:g-proteobacteria 100 Pseudomonas aeruginosa 389 | seq_00401 1 1000 1000 EXCLUDE prok:g-proteobacteria 100 Pseudomonas paraeruginosa 390 | seq_00402 1 1000 1000 EXCLUDE prok:g-proteobacteria 100 Pseudomonas aeruginosa 391 | seq_00403 1 1000 1000 EXCLUDE prok:g-proteobacteria 100 Pseudomonas aeruginosa 392 | seq_00404 1 1000 1000 EXCLUDE prok:g-proteobacteria 100 Pseudomonas aeruginosa 393 | seq_00405 1 1000 1000 EXCLUDE prok:g-proteobacteria 100 Pseudomonas aeruginosa 394 | seq_00406 1 1000 1000 EXCLUDE prok:g-proteobacteria 100 Pseudomonas aeruginosa 395 | seq_00407 1 1000 1000 EXCLUDE prok:g-proteobacteria 100 Pseudomonas aeruginosa 396 | seq_00408 1 1000 1000 EXCLUDE prok:g-proteobacteria 100 Pseudomonas aeruginosa 397 | seq_00409 1 1000 1000 EXCLUDE prok:g-proteobacteria 100 Pseudomonas aeruginosa 398 | seq_00410 1 1000 1000 EXCLUDE prok:g-proteobacteria 100 Pseudomonas aeruginosa 399 | seq_00411 1 1000 1000 EXCLUDE prok:g-proteobacteria 100 Pseudomonas aeruginosa 400 | seq_00412 1 1000 1000 EXCLUDE prok:g-proteobacteria 100 Pseudomonas aeruginosa 401 | seq_00413 1 1000 1000 EXCLUDE prok:g-proteobacteria 100 Pseudomonas aeruginosa 402 | seq_00414 1 1000 1000 EXCLUDE prok:g-proteobacteria 100 Pseudomonas aeruginosa 403 | seq_00415 1 1000 1000 EXCLUDE prok:g-proteobacteria 100 Pseudomonas aeruginosa 404 | seq_00416 1 1000 1000 EXCLUDE prok:g-proteobacteria 100 Pseudomonas aeruginosa 405 | seq_00417 1 1000 1000 EXCLUDE prok:g-proteobacteria 100 Pseudomonas aeruginosa 406 | seq_00418 1 1000 1000 EXCLUDE prok:g-proteobacteria 100 Pseudomonas aeruginosa 407 | -------------------------------------------------------------------------------- /examples/FCS_combo_test.taxonomy.rpt: -------------------------------------------------------------------------------- 1 | ##[["GX taxonomy analysis report", 3, 1], {"git-rev": "v0.5.2", "run-date": "Thu Apr 4 13:48:05 2024", "db": {"build-date": "2023-01-24", "seqs": 3025824, "Gbp": 709.264}, "run-info": {"agg-cvg": 0.999888, "asserted-div": "fung:budding yeasts", "inferred-primary-divs": ["fung:budding yeasts", "fung:ascomycetes"], "corrected-primary-divs": ["fung:budding yeasts", "fung:ascomycetes"], "genome-hash": "dec361901f6aaa92"}}] 2 | #seq-id seq-len (xp,lc,co,n,mt,pt,pm)-len cvg-by-all sep1 tax-name-1 tax-id-1 div-1 cvg-by-div-1 cvg-by-tax-1 score-1 sep2 tax-id-2 div-2 cvg-by-div-2 cvg-by-tax-2 score-2 sep3 tax-id-3 div-3 cvg-by-div-3 cvg-by-tax-3 score-3 sep4 tax-id-4 div-4 cvg-by-div-4 cvg-by-tax-4 score-4 sep5 reserved result div div_pct_cvg 3 | seq_00001 230276 6513,1927,2600,0,0,0,0 230253 | Saccharomyces cerevisiae x Saccharomyces eubayanus x Saccharomyces kudriavzevii x Saccharomyces uvarum 2528333 fung:budding yeasts 230253 220479 3218 | 27292 fung:budding yeasts 230253 203200 3076 | 2767002 fung:chytrids 5195 3302 127 | 1754190 fung:chytrids 5195 2846 120 | n/a primary-div fung:budding yeasts 100 4 | seq_00002 813242 15154,4875,10320,0,0,0,0 813224 | Saccharomyces cerevisiae 559292 fung:budding yeasts 813224 813223 6379 | 27292 fung:budding yeasts 813224 811047 6364 | 483514 fung:ascomycetes 77074 10010 186 | 2767002 fung:chytrids 20380 9440 181 | n/a primary-div fung:budding yeasts 100 5 | seq_00003 316678 6294,1909,540,0,0,0,0 316652 | Saccharomyces cerevisiae 559292 fung:budding yeasts 316652 316620 3979 | 341458 fung:budding yeasts 316652 275391 3673 | 1329386 fung:fungi 7309 4086 80 | 212818 fung:ascomycetes 18257 2832 74 | n/a primary-div fung:budding yeasts 100 6 | seq_00004 1531991 44235,9003,20000,0,0,0,0 1531248 | Saccharomyces pastorianus 27292 fung:budding yeasts 1531248 1518851 8676 | 341458 fung:budding yeasts 1531248 1429471 8428 | 2545709 fung:ascomycetes 141396 8123 171 | 1540922 fung:basidiomycetes 34260 7882 150 | n/a primary-div fung:budding yeasts 100 7 | seq_00005 576932 15065,3341,8340,0,0,0,0 576923 | Saccharomyces pastorianus 27292 fung:budding yeasts 576923 572660 5338 | 2528333 fung:budding yeasts 576923 554164 5203 | 1116209 fung:ascomycetes 60079 6926 121 | 321146 fung:ascomycetes 60079 6328 121 | n/a primary-div fung:budding yeasts 100 8 | seq_00006 270219 3630,2183,4040,0,0,0,0 270219 | Saccharomyces cerevisiae 559292 fung:budding yeasts 270219 270219 3676 | 27292 fung:budding yeasts 270219 258952 3555 | 5763 prst:protists 8716 7351 149 | 402676 fung:ascomycetes 21186 6932 144 | n/a primary-div fung:budding yeasts 100 9 | seq_00007 1090998 27474,6697,7240,0,0,0,0 1090998 | Saccharomyces pastorianus 27292 fung:budding yeasts 1090998 1079336 7310 | 341458 fung:budding yeasts 1090998 1019677 7127 | 1814901 fung:ascomycetes 105640 9153 158 | 1450760 fung:ascomycetes 105640 8592 154 | n/a primary-div fung:budding yeasts 100 10 | seq_00008 562701 8166,3543,9920,0,0,0,0 562701 | Saccharomyces cerevisiae 559292 fung:budding yeasts 562701 562686 5305 | 27292 fung:budding yeasts 562701 543256 5120 | 1274793 fung:fungi 21472 6655 144 | 65126 prst:alveolates 7486 6082 143 | n/a primary-div fung:budding yeasts 100 11 | seq_00009 439946 1874,5977,1140,0,0,0,0 439946 | Saccharomyces cerevisiae 559292 fung:budding yeasts 439946 439946 4690 | 27292 fung:budding yeasts 439946 430553 4576 | 483514 fung:ascomycetes 23163 5542 117 | 320787 prok:CFB group bacteria 10876 4443 95 | n/a primary-div fung:budding yeasts 100 12 | seq_00010 745809 13523,5207,10160,0,0,0,0 745809 | Saccharomyces cerevisiae 559292 fung:budding yeasts 745809 745775 6107 | 27292 fung:budding yeasts 745809 727586 5943 | 1758292 fung:ascomycetes 72118 13522 179 | 402676 fung:ascomycetes 72118 7052 163 | n/a primary-div fung:budding yeasts 100 13 | seq_00011~~1..908 908 0,0,0,0,0,0,0 908 | Homo sapiens 9606 anml:primates 908 908 211 | 9541 anml:primates 908 894 152 | 9685 anml:mammals 908 351 47 | 9361 anml:mammals 908 356 39 | n/a contaminant(div) anml:primates 100 14 | seq_00011~~909..667816 666908 1894,4975,3640,0,0,0,0 666908 | Saccharomyces cerevisiae 559292 fung:budding yeasts 666908 666816 5775 | 341458 fung:budding yeasts 666908 641489 5655 | 315204 fung:ascomycetes 63185 11250 148 | 147560 fung:ascomycetes 63185 9391 146 | n/a primary-div fung:budding yeasts 100 15 | seq_00012~1..100000 100000 357,1594,3640,0,0,0,0 100000 | Saccharomyces cerevisiae 559292 fung:budding yeasts 100000 100000 2236 | 27292 fung:budding yeasts 100000 98843 2211 | 2767002 fung:chytrids 7138 5808 132 | 1754190 fung:chytrids 7138 2474 115 | n/a primary-div fung:budding yeasts 100 16 | seq_00012~100011..1079187~~1..953 953 0,0,0,0,0,0,0 953 | Homo sapiens 9606 anml:primates 953 953 218 | 9541 anml:primates 953 908 115 | 1987369 fung:budding yeasts 327 270 17 | 172621 fung:ascomycetes 70 70 12 | n/a contaminant(div) anml:primates 100 17 | seq_00012~100011..1079187~~954..979177 978224 31123,5948,19080,0,0,0,0 978224 | Saccharomyces pastorianus 27292 fung:budding yeasts 978224 954098 6814 | 341458 fung:budding yeasts 978224 891758 6676 | 321614 fung:ascomycetes 106995 13179 719 | 2754530 fung:ascomycetes 106995 13495 636 | n/a primary-div fung:budding yeasts 100 18 | seq_00013~~1..963 963 0,0,0,0,0,0,0 963 | Pseudomonas aeruginosa 208964 prok:g-proteobacteria 963 963 218 | 2994495 prok:g-proteobacteria 963 962 140 | 582680 prok:high GC Gram+ 236 236 16 | 2528333 fung:budding yeasts 101 99 10 | n/a contaminant(div) prok:g-proteobacteria 100 19 | seq_00013~~964..925431 924468 24345,7271,9060,0,0,0,0 924468 | Saccharomyces pastorianus 27292 fung:budding yeasts 924468 918851 6752 | 341458 fung:budding yeasts 924468 882834 6641 | 698492 fung:ascomycetes 88981 6551 136 | 28567 fung:ascomycetes 88981 7792 136 | n/a primary-div fung:budding yeasts 100 20 | seq_00014~1..100000 100000 3510,723,0,0,0,0,0 100000 | Saccharomyces pastorianus 27292 fung:budding yeasts 100000 99232 2188 | 2528333 fung:budding yeasts 100000 88313 2051 | 1420909 fung:ascomycetes 3746 1398 60 | 937334 prok:firmicutes 1709 1425 58 | n/a primary-div fung:budding yeasts 100 21 | seq_00014~100011..785343~~1..969 969 0,0,0,0,0,0,0 969 | Pseudomonas paraeruginosa 2994495 prok:g-proteobacteria 969 969 220 | 208964 prok:g-proteobacteria 969 969 220 | 559292 fung:budding yeasts 258 236 17 | 1781167 prok:b-proteobacteria 145 145 14 | n/a contaminant(div) prok:g-proteobacteria 100 22 | seq_00014~100011..785343~~970..685333 684364 11464,4637,6460,0,0,0,0 684364 | Saccharomyces pastorianus 27292 fung:budding yeasts 684364 678608 5738 | 341458 fung:budding yeasts 684364 652614 5711 | 342668 fung:ascomycetes 59381 7031 144 | 223409 fung:ascomycetes 59381 7503 141 | n/a primary-div fung:budding yeasts 100 23 | seq_00015 1091291 20286,6407,10680,0,0,0,0 1091291 | Saccharomyces cerevisiae 559292 fung:budding yeasts 1091291 1091291 7387 | 27292 fung:budding yeasts 1091291 1076477 7261 | 436113 prok:mycoplasmas 1231 898 208 | 155726 fung:fungi 43730 12164 172 | n/a primary-div fung:budding yeasts 100 24 | seq_00016 948066 25770,5293,6920,0,0,0,0 948066 | uncultured Saccharomyces 341458 fung:budding yeasts 948066 887734 6655 | 27292 fung:budding yeasts 948066 936308 6629 | 2857063 fung:ascomycetes 93250 13236 171 | 158046 fung:ascomycetes 93250 8066 152 | n/a primary-div fung:budding yeasts 100 25 | seq_00017 85779 0,13188,0,0,0,0,0 85779 | Saccharomyces cerevisiae 559292 fung:budding yeasts 85779 85779 2071 | 1987369 fung:budding yeasts 85779 65346 1195 | 96803 anml:crustaceans 9956 9804 160 | 1392251 fung:ascomycetes 6537 6333 94 | n/a primary-div fung:budding yeasts 100 26 | seq_00018 522 0,382,140,0,0,0,0 316 | Halomonas massiliensis 1816686 prok:g-proteobacteria 129 121 60 | 2721130 prok:firmicutes 316 80 59 | 112498 fung:ascomycetes 212 76 59 | 5801 prst:alveolates 150 150 58 | n/a primary-div fung:ascomycetes 41 27 | seq_00019 1000 0,64,0,0,0,0,0 1000 | Homo sapiens 9606 anml:primates 1000 1000 224 | 9541 anml:primates 1000 967 121 | | | n/a contaminant(human) anml:primates 100 28 | seq_00020 1000 0,0,0,0,0,0,0 1000 | Homo sapiens 9606 anml:primates 1000 1000 224 | 9541 anml:primates 1000 1000 147 | 1366115 anml:insects 223 212 16 | 29053 anml:insects 223 107 11 | n/a contaminant(human) anml:primates 100 29 | seq_00021 1000 0,0,0,0,0,0,0 985 | Macaca fascicularis 9541 anml:primates 985 985 125 | 9606 anml:primates 985 438 56 | | | n/a contaminant(human) anml:primates 99 30 | seq_00022 1000 0,0,160,0,0,0,0 1000 | Homo sapiens 9606 anml:primates 1000 1000 224 | 284031 prok:high GC Gram+ 408 271 18 | 1367973 prok:high GC Gram+ 408 244 17 | 169388 fung:ascomycetes 215 215 16 | n/a contaminant(human) anml:primates 100 31 | seq_00023 1000 0,0,460,0,0,0,0 1000 | Homo sapiens 9606 anml:primates 1000 1000 224 | 9541 anml:primates 1000 1000 166 | 9837 anml:mammals 881 425 93 | 73337 anml:mammals 881 564 91 | n/a contaminant(human) anml:primates 100 32 | seq_00024 1000 0,0,160,0,0,0,0 1000 | Homo sapiens 9606 anml:primates 1000 1000 224 | 9541 anml:primates 1000 687 146 | 9796 anml:mammals 487 373 51 | 38626 anml:marsupials 178 178 49 | n/a contaminant(human) anml:primates 100 33 | seq_00025 1000 0,0,0,0,0,0,0 1000 | Homo sapiens 9606 anml:primates 1000 1000 224 | 9541 anml:primates 1000 1000 156 | 9823 anml:mammals 450 227 69 | 9739 anml:mammals 450 325 53 | n/a contaminant(human) anml:primates 100 34 | seq_00026 1000 0,0,140,0,0,0,0 1000 | Homo sapiens 9606 anml:primates 1000 1000 224 | 9541 anml:primates 1000 982 177 | 1911570 prok:a-proteobacteria 279 279 30 | 74381 prst:algae 128 128 17 | n/a contaminant(human) anml:primates 100 35 | seq_00027 1000 0,0,0,0,0,0,0 1000 | Homo sapiens 9606 anml:primates 1000 1000 224 | 9541 anml:primates 1000 978 141 | 73337 anml:mammals 360 206 37 | 27675 anml:mammals 360 360 31 | n/a contaminant(human) anml:primates 100 36 | seq_00028 1000 0,0,0,0,0,0,0 1000 | Homo sapiens 9606 anml:primates 1000 1000 224 | 9541 anml:primates 1000 987 143 | | | n/a contaminant(human) anml:primates 100 37 | seq_00029 1000 0,0,0,0,0,0,0 1000 | Homo sapiens 9606 anml:primates 1000 1000 224 | 9541 anml:primates 1000 996 150 | | | n/a contaminant(human) anml:primates 100 38 | seq_00030 1000 0,0,0,0,0,0,0 1000 | Homo sapiens 9606 anml:primates 1000 1000 224 | 9541 anml:primates 1000 1000 171 | 9739 anml:mammals 696 696 60 | 1911570 prok:a-proteobacteria 287 287 30 | n/a contaminant(human) anml:primates 100 39 | seq_00031 1000 0,0,0,0,0,0,0 1000 | Homo sapiens 9606 anml:primates 1000 1000 224 | 9541 anml:primates 1000 998 125 | 158386 plnt:plants 128 128 14 | | n/a contaminant(human) anml:primates 100 40 | seq_00032 1000 0,0,0,0,0,0,0 1000 | Homo sapiens 9606 anml:primates 1000 1000 224 | 9541 anml:primates 1000 999 114 | | | n/a contaminant(human) anml:primates 100 41 | seq_00033 1000 0,0,0,0,0,0,0 1000 | Homo sapiens 9606 anml:primates 1000 1000 224 | 9541 anml:primates 1000 979 189 | 73337 anml:mammals 987 947 98 | 59479 anml:mammals 987 924 96 | n/a contaminant(human) anml:primates 100 42 | seq_00034 1000 0,0,0,0,0,0,0 1000 | Homo sapiens 9606 anml:primates 1000 1000 224 | 9541 anml:primates 1000 965 177 | 73337 anml:mammals 531 351 52 | 291302 anml:mammals 531 324 48 | n/a contaminant(human) anml:primates 100 43 | seq_00035 1000 0,0,0,0,0,0,0 1000 | Homo sapiens 9606 anml:primates 1000 1000 224 | 9541 anml:primates 1000 964 144 | 291302 anml:mammals 619 619 49 | 885580 anml:rodents 353 231 40 | n/a contaminant(human) anml:primates 100 44 | seq_00036 1000 0,0,0,0,0,0,0 1000 | Homo sapiens 9606 anml:primates 1000 1000 224 | 9541 anml:primates 1000 973 173 | 9796 anml:mammals 1000 979 95 | 73337 anml:mammals 1000 957 95 | n/a contaminant(human) anml:primates 100 45 | seq_00037 1000 0,0,0,0,0,0,0 1000 | Homo sapiens 9606 anml:primates 1000 1000 224 | 9541 anml:primates 1000 987 142 | | | n/a contaminant(human) anml:primates 100 46 | seq_00038 1000 0,95,0,0,0,0,0 1000 | Homo sapiens 9606 anml:primates 1000 1000 224 | 9541 anml:primates 1000 999 176 | 37032 anml:mammals 269 269 29 | | n/a contaminant(human) anml:primates 100 47 | seq_00039 1000 0,0,0,0,0,0,0 1000 | Homo sapiens 9606 anml:primates 1000 1000 224 | 9541 anml:primates 1000 987 168 | 73337 anml:mammals 1000 978 91 | 9796 anml:mammals 1000 830 83 | n/a contaminant(human) anml:primates 100 48 | seq_00040 1000 0,0,0,0,0,0,0 1000 | Homo sapiens 9606 anml:primates 1000 1000 224 | 9541 anml:primates 1000 971 144 | 9837 anml:mammals 882 828 73 | 99487 anml:mammals 882 790 65 | n/a contaminant(human) anml:primates 100 49 | seq_00041 1000 0,0,0,0,0,0,0 1000 | Homo sapiens 9606 anml:primates 920 893 96 | 9541 anml:primates 920 581 67 | 67082 virs:eukaryotic viruses 298 298 58 | 59479 anml:mammals 280 270 37 | n/a contaminant(div) anml:primates 92 50 | seq_00042 1000 0,0,0,0,0,0,0 1000 | Homo sapiens 9606 anml:primates 1000 1000 224 | 9541 anml:primates 1000 969 158 | 67082 virs:eukaryotic viruses 549 414 69 | 2759193 virs:prokaryotic viruses 590 590 67 | n/a contaminant(human) anml:primates 100 51 | seq_00043 1000 0,0,60,0,0,0,0 1000 | Homo sapiens 9606 anml:primates 1000 1000 224 | 9541 anml:primates 1000 986 174 | 9796 anml:mammals 694 596 112 | 9995 anml:rodents 362 265 112 | n/a contaminant(human) anml:primates 100 52 | seq_00044 1000 0,0,0,0,0,0,0 1000 | Homo sapiens 9606 anml:primates 1000 1000 224 | 9541 anml:primates 1000 990 159 | 291302 anml:mammals 962 952 85 | 59479 anml:mammals 962 913 81 | n/a contaminant(human) anml:primates 100 53 | seq_00045 1000 0,0,0,0,0,0,0 814 | Homo sapiens 9606 anml:primates 814 731 80 | 9483 anml:primates 814 645 67 | 67082 virs:eukaryotic viruses 414 414 65 | 2759193 virs:prokaryotic viruses 282 282 49 | n/a contaminant(div) anml:primates 81 54 | seq_00046 1000 0,0,0,0,0,0,0 1000 | Homo sapiens 9606 anml:primates 1000 1000 224 | 9541 anml:primates 1000 713 130 | 5857 prst:alveolates 353 321 54 | 1237626 prst:alveolates 353 262 53 | n/a contaminant(human) anml:primates 100 55 | seq_00047 1000 0,109,0,0,0,0,0 1000 | Homo sapiens 9606 anml:primates 1000 1000 224 | 9541 anml:primates 1000 1000 144 | 8030 anml:fishes 335 335 29 | 6579 anml:molluscs 170 170 18 | n/a contaminant(human) anml:primates 100 56 | seq_00048 1000 0,104,0,0,0,0,0 1000 | Homo sapiens 9606 anml:primates 1000 1000 224 | 9541 anml:primates 1000 742 135 | 37032 anml:mammals 265 265 36 | 1911570 prok:a-proteobacteria 322 322 33 | n/a contaminant(human) anml:primates 100 57 | seq_00049 1000 0,0,0,0,0,0,0 1000 | Macaca fascicularis 9541 anml:primates 1000 984 129 | 9606 anml:primates 1000 1000 118 | 9361 anml:mammals 836 713 50 | 8407 anml:amphibians 760 760 45 | n/a contaminant(human) anml:primates 100 58 | seq_00050 1000 0,66,0,0,0,0,0 1000 | Homo sapiens 9606 anml:primates 1000 1000 224 | 9541 anml:primates 1000 958 144 | 1911570 prok:a-proteobacteria 346 346 30 | | n/a contaminant(human) anml:primates 100 59 | seq_00051 1000 0,0,0,0,0,0,0 1000 | Homo sapiens 9606 anml:primates 1000 1000 224 | 9541 anml:primates 1000 1000 147 | 7757 anml:fishes 244 244 18 | | n/a contaminant(human) anml:primates 100 60 | seq_00052 1000 0,110,0,0,0,0,0 1000 | Homo sapiens 9606 anml:primates 1000 1000 224 | 9541 anml:primates 1000 1000 187 | 9796 anml:mammals 813 637 52 | 27675 anml:mammals 813 360 45 | n/a contaminant(human) anml:primates 100 61 | seq_00053 1000 0,0,0,0,0,0,0 1000 | Homo sapiens 9606 anml:primates 1000 1000 224 | 9541 anml:primates 1000 1000 182 | 291302 anml:mammals 819 819 64 | | n/a contaminant(human) anml:primates 100 62 | seq_00054 1000 0,113,0,0,0,0,0 1000 | Homo sapiens 9606 anml:primates 1000 1000 224 | 9541 anml:primates 1000 1000 156 | | | n/a contaminant(human) anml:primates 100 63 | seq_00055 1000 0,0,600,0,0,0,0 1000 | Homo sapiens 9606 anml:primates 1000 1000 224 | 9541 anml:primates 1000 1000 216 | 9796 anml:mammals 999 963 184 | 37032 anml:mammals 999 944 176 | n/a contaminant(div) anml:primates 100 64 | seq_00056 1000 0,0,0,0,0,0,0 1000 | Homo sapiens 9606 anml:primates 1000 1000 224 | 9541 anml:primates 1000 975 190 | 9796 anml:mammals 984 937 86 | 73337 anml:mammals 984 944 82 | n/a contaminant(human) anml:primates 100 65 | seq_00057 1000 0,63,0,0,0,0,0 1000 | Homo sapiens 9606 anml:primates 1000 1000 224 | 9483 anml:primates 1000 960 115 | 27675 anml:mammals 166 166 30 | | n/a contaminant(human) anml:primates 100 66 | seq_00058 1000 0,0,0,0,0,0,0 1000 | Homo sapiens 9606 anml:primates 1000 1000 224 | 9541 anml:primates 1000 1000 212 | 9796 anml:mammals 976 849 76 | 99487 anml:mammals 976 923 75 | n/a contaminant(human) anml:primates 100 67 | seq_00059 1000 0,0,0,0,0,0,0 1000 | Homo sapiens 9606 anml:primates 1000 1000 224 | 9541 anml:primates 1000 1000 220 | 9986 anml:rodents 999 995 199 | 9796 anml:mammals 997 974 183 | n/a contaminant(div) anml:primates 100 68 | seq_00060 1000 0,0,0,0,0,0,0 1000 | Homo sapiens 9606 anml:primates 1000 1000 224 | 9541 anml:primates 1000 1000 173 | 452646 anml:mammals 992 960 68 | 9823 anml:mammals 992 933 63 | n/a contaminant(human) anml:primates 100 69 | seq_00061 1000 0,0,0,0,0,0,0 1000 | Homo sapiens 9606 anml:primates 1000 1000 224 | 9541 anml:primates 1000 1000 179 | 9685 anml:mammals 832 757 92 | 59479 anml:mammals 832 753 91 | n/a contaminant(human) anml:primates 100 70 | seq_00062 1000 0,0,0,0,0,0,0 1000 | Homo sapiens 9606 anml:primates 1000 1000 224 | 9541 anml:primates 1000 990 165 | 9796 anml:mammals 512 512 45 | | n/a contaminant(human) anml:primates 100 71 | seq_00063 1000 0,0,0,0,0,0,0 1000 | Homo sapiens 9606 anml:primates 1000 1000 224 | 9541 anml:primates 1000 1000 163 | | | n/a contaminant(human) anml:primates 100 72 | seq_00064 1000 0,0,0,0,0,0,0 1000 | Homo sapiens 9606 anml:primates 1000 1000 224 | 9541 anml:primates 1000 1000 180 | | | n/a contaminant(human) anml:primates 100 73 | seq_00065 1000 0,0,0,0,0,0,0 1000 | Homo sapiens 9606 anml:primates 1000 1000 224 | 9541 anml:primates 1000 1000 193 | 9796 anml:mammals 955 817 102 | 99487 anml:mammals 955 829 97 | n/a contaminant(human) anml:primates 100 74 | seq_00066 1000 0,0,0,0,0,0,0 1000 | Macaca fascicularis 9541 anml:primates 1000 1000 144 | 73337 anml:mammals 788 576 62 | 1868482 anml:primates 1000 392 60 | 9739 anml:mammals 788 705 58 | n/a contaminant(div) anml:primates 100 75 | seq_00067 1000 0,0,0,0,0,0,0 1000 | Homo sapiens 9606 anml:primates 1000 1000 224 | 9483 anml:primates 1000 978 129 | | | n/a contaminant(human) anml:primates 100 76 | seq_00068 1000 0,0,0,0,0,0,0 1000 | Homo sapiens 9606 anml:primates 1000 1000 224 | 9541 anml:primates 1000 1000 175 | | | n/a contaminant(human) anml:primates 100 77 | seq_00069 1000 0,0,0,0,0,0,0 1000 | Homo sapiens 9606 anml:primates 1000 1000 224 | 9541 anml:primates 1000 1000 187 | 9615 anml:mammals 993 643 77 | 73337 anml:mammals 993 611 77 | n/a contaminant(human) anml:primates 100 78 | seq_00070 1000 0,0,0,0,0,0,0 1000 | Homo sapiens 9606 anml:primates 1000 1000 224 | 9541 anml:primates 1000 1000 178 | 73337 anml:mammals 973 960 69 | 51298 anml:mammals 973 289 40 | n/a contaminant(human) anml:primates 100 79 | seq_00071 1000 0,0,0,0,0,0,0 1000 | Homo sapiens 9606 anml:primates 1000 1000 224 | 9541 anml:primates 1000 1000 166 | | | n/a contaminant(human) anml:primates 100 80 | seq_00072 1000 0,0,0,0,0,0,0 1000 | Homo sapiens 9606 anml:primates 1000 1000 224 | 9541 anml:primates 1000 1000 145 | 1777135 prok:b-proteobacteria 101 101 10 | | n/a contaminant(human) anml:primates 100 81 | seq_00073 1000 0,0,0,0,0,0,0 1000 | Homo sapiens 9606 anml:primates 1000 1000 224 | 9541 anml:primates 1000 1000 190 | 9796 anml:mammals 986 985 71 | 9739 anml:mammals 986 394 48 | n/a contaminant(human) anml:primates 100 82 | seq_00074 1000 0,0,0,0,0,0,0 1000 | Homo sapiens 9606 anml:primates 1000 1000 224 | 9541 anml:primates 1000 1000 157 | 9796 anml:mammals 645 621 55 | 452646 anml:mammals 645 476 44 | n/a contaminant(human) anml:primates 100 83 | seq_00075 1000 0,0,0,0,0,0,0 1000 | Homo sapiens 9606 anml:primates 1000 1000 224 | 9541 anml:primates 1000 997 168 | 9940 anml:mammals 958 958 64 | | n/a contaminant(human) anml:primates 100 84 | seq_00076 1000 0,0,0,0,0,0,0 1000 | Macaca fascicularis 9541 anml:primates 1000 999 181 | 9483 anml:primates 1000 790 115 | 9837 anml:mammals 796 796 70 | | n/a contaminant(div) anml:primates 100 85 | seq_00077 1000 0,0,0,0,0,0,0 1000 | Homo sapiens 9606 anml:primates 1000 1000 224 | 9541 anml:primates 1000 972 170 | 9995 anml:rodents 741 733 76 | 51337 anml:rodents 741 569 64 | n/a contaminant(human) anml:primates 100 86 | seq_00078 1000 0,0,0,0,0,0,0 1000 | Homo sapiens 9606 anml:primates 1000 1000 166 | 9541 anml:primates 1000 974 156 | 73337 anml:mammals 1000 980 66 | 9796 anml:mammals 1000 998 64 | n/a contaminant(human) anml:primates 100 87 | seq_00079 1000 0,0,0,0,0,0,0 985 | Homo sapiens 9606 anml:primates 981 979 140 | 9541 anml:primates 981 968 132 | 73337 anml:mammals 985 930 65 | 9739 anml:mammals 985 959 60 | n/a contaminant(human) anml:primates 98 88 | seq_00080 1000 0,0,0,0,0,0,0 1000 | Homo sapiens 9606 anml:primates 1000 1000 224 | 9541 anml:primates 1000 1000 159 | 73337 anml:mammals 995 856 72 | 89673 anml:mammals 995 946 57 | n/a contaminant(human) anml:primates 100 89 | seq_00081 1000 0,0,0,0,0,0,0 1000 | Homo sapiens 9606 anml:primates 1000 1000 224 | 9541 anml:primates 1000 987 175 | 73337 anml:mammals 872 872 64 | | n/a contaminant(human) anml:primates 100 90 | seq_00082 1000 0,0,0,0,0,0,0 1000 | Homo sapiens 9606 anml:primates 1000 1000 224 | 9541 anml:primates 1000 1000 194 | 9796 anml:mammals 1000 949 114 | 9940 anml:mammals 1000 978 114 | n/a contaminant(human) anml:primates 100 91 | seq_00083 1000 0,0,720,0,0,0,0 1000 | Homo sapiens 9606 anml:primates 1000 1000 224 | 9483 anml:primates 1000 990 129 | 73337 anml:mammals 999 995 121 | 9796 anml:mammals 999 683 105 | n/a contaminant(human) anml:primates 100 92 | seq_00084 1000 0,0,0,0,0,0,0 1000 | Homo sapiens 9606 anml:primates 1000 1000 224 | 9541 anml:primates 1000 1000 194 | | | n/a contaminant(human) anml:primates 100 93 | seq_00085 1000 0,0,0,0,0,0,0 1000 | Homo sapiens 9606 anml:primates 1000 1000 224 | 9541 anml:primates 1000 969 153 | | | n/a contaminant(human) anml:primates 100 94 | seq_00086 1000 0,57,0,0,0,0,0 1000 | Homo sapiens 9606 anml:primates 1000 1000 224 | 9541 anml:primates 1000 970 157 | 31243 anml:nematodes 260 260 18 | | n/a contaminant(human) anml:primates 100 95 | seq_00087 1000 0,0,0,0,0,0,0 1000 | Homo sapiens 9606 anml:primates 1000 1000 224 | 9541 anml:primates 1000 988 168 | 73337 anml:mammals 999 958 85 | 9837 anml:mammals 999 898 76 | n/a contaminant(human) anml:primates 100 96 | seq_00088 1000 0,0,0,0,0,0,0 1000 | Homo sapiens 9606 anml:primates 1000 1000 161 | 9541 anml:primates 1000 808 107 | | | n/a contaminant(human) anml:primates 100 97 | seq_00089 1000 0,0,0,0,0,0,0 1000 | Homo sapiens 9606 anml:primates 1000 1000 224 | 9541 anml:primates 1000 987 198 | 9739 anml:mammals 473 458 66 | 9796 anml:mammals 473 334 64 | n/a contaminant(human) anml:primates 100 98 | seq_00090 1000 0,0,0,0,0,0,0 1000 | Homo sapiens 9606 anml:primates 1000 1000 224 | 9541 anml:primates 1000 1000 197 | 27675 anml:mammals 766 638 56 | 291302 anml:mammals 766 447 54 | n/a contaminant(human) anml:primates 100 99 | seq_00091 1000 0,72,0,0,0,0,0 1000 | Homo sapiens 9606 anml:primates 1000 1000 224 | 9541 anml:primates 1000 989 165 | 9796 anml:mammals 792 676 61 | 9739 anml:mammals 792 694 56 | n/a contaminant(human) anml:primates 100 100 | seq_00092 1000 0,0,0,0,0,0,0 1000 | Homo sapiens 9606 anml:primates 1000 1000 224 | 9541 anml:primates 1000 975 195 | 9704 anml:mammals 996 965 113 | 9615 anml:mammals 996 979 111 | n/a contaminant(human) anml:primates 100 101 | seq_00093 1000 0,0,0,0,0,0,0 1000 | Homo sapiens 9606 anml:primates 1000 1000 224 | 9541 anml:primates 1000 991 142 | 9669 anml:mammals 520 520 49 | 79931 fung:basidiomycetes 116 116 12 | n/a contaminant(human) anml:primates 100 102 | seq_00094 1000 0,0,0,0,0,0,0 1000 | Homo sapiens 9606 anml:primates 1000 1000 224 | 9541 anml:primates 1000 1000 160 | | | n/a contaminant(human) anml:primates 100 103 | seq_00095 1000 0,0,0,0,0,0,0 1000 | Homo sapiens 9606 anml:primates 1000 1000 224 | 9541 anml:primates 1000 996 154 | 452646 anml:mammals 755 732 64 | 9704 anml:mammals 755 727 61 | n/a contaminant(human) anml:primates 100 104 | seq_00096 1000 0,0,0,0,0,0,0 1000 | Homo sapiens 9606 anml:primates 1000 1000 224 | 9541 anml:primates 1000 1000 183 | | | n/a contaminant(human) anml:primates 100 105 | seq_00097 1000 0,0,0,0,0,0,0 1000 | Homo sapiens 9606 anml:primates 1000 1000 224 | 9541 anml:primates 1000 1000 194 | 9796 anml:mammals 1000 1000 116 | 9995 anml:rodents 1000 1000 112 | n/a contaminant(human) anml:primates 100 106 | seq_00098 1000 0,141,0,0,0,0,0 1000 | Homo sapiens 9606 anml:primates 1000 1000 224 | 9541 anml:primates 1000 1000 181 | | | n/a contaminant(human) anml:primates 100 107 | seq_00099 1000 0,0,0,0,0,0,0 1000 | Homo sapiens 9606 anml:primates 1000 1000 224 | 9541 anml:primates 1000 1000 210 | 73337 anml:mammals 335 335 35 | | n/a contaminant(human) anml:primates 100 108 | seq_00100 1000 0,0,0,0,0,0,0 1000 | Homo sapiens 9606 anml:primates 1000 1000 224 | 9541 anml:primates 1000 974 175 | | | n/a contaminant(human) anml:primates 100 109 | seq_00101 1000 0,0,0,0,0,0,0 1000 | Homo sapiens 9606 anml:primates 1000 1000 114 | 9541 anml:primates 1000 1000 90 | | | n/a contaminant(div) anml:primates 100 110 | seq_00102 1000 0,170,0,0,0,0,0 1000 | Homo sapiens 9606 anml:primates 1000 1000 224 | 9541 anml:primates 1000 964 170 | 73337 anml:mammals 676 665 64 | 9739 anml:mammals 676 666 60 | n/a contaminant(human) anml:primates 100 111 | seq_00103 1000 0,0,0,0,0,0,0 1000 | Homo sapiens 9606 anml:primates 1000 1000 224 | 9541 anml:primates 1000 969 164 | | | n/a contaminant(human) anml:primates 100 112 | seq_00104 1000 0,0,160,0,0,0,0 1000 | Homo sapiens 9606 anml:primates 1000 1000 224 | 9483 anml:primates 1000 715 59 | 2759193 virs:prokaryotic viruses 451 451 56 | 153301 virs:eukaryotic viruses 484 484 53 | n/a contaminant(human) anml:primates 100 113 | seq_00105 1000 0,0,0,0,0,0,0 1000 | Homo sapiens 9606 anml:primates 1000 1000 224 | 9541 anml:primates 1000 926 186 | 9704 anml:mammals 1000 959 121 | 143302 anml:mammals 1000 958 121 | n/a contaminant(human) anml:primates 100 114 | seq_00106 1000 0,0,0,0,0,0,0 1000 | Homo sapiens 9606 anml:primates 1000 1000 224 | 9541 anml:primates 1000 1000 162 | 73337 anml:mammals 976 976 77 | | n/a contaminant(human) anml:primates 100 115 | seq_00107 1000 0,0,0,0,0,0,0 1000 | Homo sapiens 9606 anml:primates 1000 1000 224 | 9541 anml:primates 1000 985 72 | 5857 prst:alveolates 531 372 49 | 67082 virs:eukaryotic viruses 436 436 41 | n/a contaminant(human) anml:primates 100 116 | seq_00108 1000 0,0,0,0,0,0,0 1000 | Homo sapiens 9606 anml:primates 1000 1000 224 | 9541 anml:primates 1000 974 165 | 9796 anml:mammals 1000 880 84 | 73337 anml:mammals 1000 1000 74 | n/a contaminant(human) anml:primates 100 117 | seq_00109 1000 0,0,0,0,0,0,0 993 | Macaca fascicularis 9541 anml:primates 993 992 92 | 9606 anml:primates 993 946 78 | | | n/a contaminant(div) anml:primates 99 118 | seq_00110 1000 0,0,0,0,0,0,0 1000 | Homo sapiens 9606 anml:primates 1000 1000 224 | 9541 anml:primates 1000 1000 161 | 6945 anml:insects 217 217 16 | | n/a contaminant(human) anml:primates 100 119 | seq_00111 1000 0,0,0,0,0,0,0 1000 | Homo sapiens 9606 anml:primates 1000 1000 224 | 9541 anml:primates 1000 1000 145 | | | n/a contaminant(human) anml:primates 100 120 | seq_00112 1000 0,0,0,0,0,0,0 1000 | Homo sapiens 9606 anml:primates 1000 1000 224 | 9541 anml:primates 1000 998 144 | 9365 anml:mammals 415 415 48 | | n/a contaminant(human) anml:primates 100 121 | seq_00113 1000 0,61,0,0,0,0,0 1000 | Homo sapiens 9606 anml:primates 1000 1000 225 | 9541 anml:primates 1000 987 106 | 13632 anml:insects 160 160 15 | | n/a contaminant(human) anml:primates 100 122 | seq_00114 1000 0,0,0,0,0,0,0 1000 | Homo sapiens 9606 anml:primates 1000 1000 106 | 9541 anml:primates 1000 1000 96 | | | n/a contaminant(div) anml:primates 100 123 | seq_00115 1000 0,0,0,0,0,0,0 1000 | Homo sapiens 9606 anml:primates 1000 1000 224 | 9541 anml:primates 1000 1000 167 | 37032 anml:mammals 897 897 63 | | n/a contaminant(human) anml:primates 100 124 | seq_00116 1000 0,0,0,0,0,0,0 1000 | Macaca fascicularis 9541 anml:primates 1000 1000 100 | 9606 anml:primates 1000 1000 98 | | | n/a contaminant(div) anml:primates 100 125 | seq_00117 1000 0,0,0,0,0,0,0 1000 | Homo sapiens 9606 anml:primates 1000 1000 224 | 9541 anml:primates 1000 1000 176 | | | n/a contaminant(human) anml:primates 100 126 | seq_00118 1000 0,0,0,0,0,0,0 1000 | Homo sapiens 9606 anml:primates 1000 1000 224 | 9541 anml:primates 1000 1000 171 | 9669 anml:mammals 966 920 98 | 99487 anml:mammals 966 824 97 | n/a contaminant(human) anml:primates 100 127 | seq_00119 1000 0,0,0,0,0,0,0 1000 | Macaca fascicularis 9541 anml:primates 1000 1000 156 | 9483 anml:primates 1000 834 58 | | | n/a contaminant(div) anml:primates 100 128 | seq_00120 1000 0,0,0,0,0,0,0 1000 | Homo sapiens 9606 anml:primates 1000 1000 224 | 9541 anml:primates 1000 974 194 | 9796 anml:mammals 999 982 80 | 99487 anml:mammals 999 426 50 | n/a contaminant(human) anml:primates 100 129 | seq_00121 1000 0,0,0,0,0,0,0 1000 | Homo sapiens 9606 anml:primates 1000 1000 224 | 9541 anml:primates 1000 1000 173 | 73337 anml:mammals 1000 911 84 | 9739 anml:mammals 1000 830 80 | n/a contaminant(human) anml:primates 100 130 | seq_00122 1000 0,0,0,0,0,0,0 1000 | Homo sapiens 9606 anml:primates 1000 1000 224 | 9541 anml:primates 1000 1000 169 | 73337 anml:mammals 526 358 43 | 291302 anml:mammals 526 275 34 | n/a contaminant(human) anml:primates 100 131 | seq_00123 1000 0,0,0,0,0,0,0 1000 | Homo sapiens 9606 anml:primates 1000 1000 224 | 9541 anml:primates 1000 982 183 | 27675 anml:mammals 571 475 60 | 9796 anml:mammals 571 525 59 | n/a contaminant(human) anml:primates 100 132 | seq_00124 1000 0,0,180,0,0,0,0 1000 | Homo sapiens 9606 anml:primates 1000 1000 213 | 1911570 prok:a-proteobacteria 692 692 70 | 9541 anml:primates 1000 962 53 | 79782 anml:insects 314 314 19 | n/a contaminant(human) anml:primates 100 133 | seq_00125 1000 0,0,140,0,0,0,0 1000 | Homo sapiens 9606 anml:primates 1000 1000 195 | 1911570 prok:a-proteobacteria 852 852 76 | 9541 anml:primates 1000 978 57 | 8520 anml:reptiles 235 225 19 | n/a contaminant(human) anml:primates 100 134 | seq_00126 1000 0,0,0,0,0,0,0 1000 | Homo sapiens 9606 anml:primates 1000 1000 208 | 9541 anml:primates 1000 960 54 | 1911570 prok:a-proteobacteria 292 292 42 | 79782 anml:insects 165 165 15 | n/a contaminant(human) anml:primates 100 135 | seq_00127 1000 0,0,120,0,0,0,0 975 | Homo sapiens 9606 anml:primates 975 863 169 | 1911570 prok:a-proteobacteria 638 638 65 | 9541 anml:primates 975 974 54 | 3818 plnt:plants 413 307 18 | n/a contaminant(human) anml:primates 98 136 | seq_00128 1000 0,0,120,0,0,0,0 1000 | Homo sapiens 9606 anml:primates 1000 1000 169 | 9541 anml:primates 1000 984 58 | 1911570 prok:a-proteobacteria 204 204 23 | 38626 anml:marsupials 259 236 16 | n/a contaminant(human) anml:primates 100 137 | seq_00129 1000 0,0,0,0,0,0,0 1000 | Homo sapiens 9606 anml:primates 1000 1000 224 | 9541 anml:primates 1000 968 56 | 1911570 prok:a-proteobacteria 352 352 50 | 79782 anml:insects 279 158 14 | n/a contaminant(human) anml:primates 100 138 | seq_00130 1000 0,0,0,0,0,0,0 1000 | Homo sapiens 9606 anml:primates 1000 1000 234 | 1911570 prok:a-proteobacteria 728 728 70 | 9541 anml:primates 1000 1000 55 | 2711 plnt:plants 421 189 16 | n/a contaminant(human) anml:primates 100 139 | seq_00131 1000 0,0,0,0,0,0,0 977 | Homo sapiens 9606 anml:primates 977 977 111 | 4432 plnt:plants 139 139 14 | | | n/a contaminant(div) anml:primates 98 140 | seq_00132 1000 0,509,0,0,0,0,0 1000 | Homo sapiens 9606 anml:primates 1000 1000 224 | 1911570 prok:a-proteobacteria 160 160 35 | 13686 anml:insects 254 254 18 | 2583219 prok:firmicutes 196 196 16 | n/a contaminant(human) anml:primates 100 141 | seq_00133 1000 0,646,0,0,0,0,0 1000 | Homo sapiens 9606 anml:primates 1000 1000 176 | 1911570 prok:a-proteobacteria 160 160 31 | 2583219 prok:firmicutes 122 122 14 | 1947030 prok:g-proteobacteria 137 137 12 | n/a contaminant(human) anml:primates 100 142 | seq_00134 1000 0,492,0,0,0,0,0 1000 | Homo sapiens 9606 anml:primates 1000 1000 224 | 1911570 prok:a-proteobacteria 264 264 37 | 6596 anml:molluscs 739 701 32 | 6579 anml:molluscs 739 414 23 | n/a contaminant(human) anml:primates 100 143 | seq_00135 1000 0,0,0,0,0,0,0 1000 | Homo sapiens 9606 anml:primates 1000 1000 219 | 176946 anml:reptiles 64 64 8 | | | n/a contaminant(human) anml:primates 100 144 | seq_00136 1000 0,82,0,0,0,0,0 1000 | Homo sapiens 9606 anml:primates 1000 1000 224 | 1911570 prok:a-proteobacteria 286 286 35 | 6596 anml:molluscs 684 646 31 | 6579 anml:molluscs 684 439 24 | n/a contaminant(human) anml:primates 100 145 | seq_00137 1000 0,81,0,0,0,0,0 1000 | Homo sapiens 9606 anml:primates 1000 1000 211 | 1911570 prok:a-proteobacteria 286 286 36 | 6579 anml:molluscs 818 545 27 | 6596 anml:molluscs 818 416 26 | n/a contaminant(human) anml:primates 100 146 | seq_00138 1000 0,0,0,0,0,0,0 1000 | Homo sapiens 9606 anml:primates 1000 1000 224 | 6596 anml:molluscs 426 411 26 | 6579 anml:molluscs 426 132 14 | | n/a contaminant(human) anml:primates 100 147 | seq_00139 1000 0,0,0,0,0,0,0 1000 | Homo sapiens 9606 anml:primates 1000 1000 174 | 176946 anml:reptiles 104 104 10 | | | n/a contaminant(human) anml:primates 100 148 | seq_00140 1000 0,564,0,0,0,0,0 986 | Homo sapiens 9606 anml:primates 986 986 75 | 1911570 prok:a-proteobacteria 264 264 36 | 6596 anml:molluscs 705 590 31 | 6579 anml:molluscs 705 620 29 | n/a contaminant(div) anml:primates 99 149 | seq_00141 1000 0,0,0,0,0,0,0 1000 | Homo sapiens 9606 anml:primates 1000 1000 224 | 1911570 prok:a-proteobacteria 200 200 35 | 2583219 prok:firmicutes 196 196 16 | 3981 plnt:plants 18 18 4 | n/a contaminant(human) anml:primates 100 150 | seq_00142 1000 0,0,0,0,0,0,0 1000 | Homo sapiens 9606 anml:primates 1000 1000 224 | 1911570 prok:a-proteobacteria 272 272 36 | 6596 anml:molluscs 707 692 32 | 6579 anml:molluscs 707 342 24 | n/a contaminant(human) anml:primates 100 151 | seq_00143 1000 0,493,0,0,0,0,0 986 | Homo sapiens 9606 anml:primates 986 986 214 | 1911570 prok:a-proteobacteria 286 286 40 | 6579 anml:molluscs 911 734 32 | 6596 anml:molluscs 911 576 30 | n/a contaminant(human) anml:primates 99 152 | seq_00144 1000 0,0,120,0,0,0,0 986 | Homo sapiens 9606 anml:primates 986 986 107 | 6596 anml:molluscs 758 721 35 | 1911570 prok:a-proteobacteria 193 193 35 | 6579 anml:molluscs 758 406 25 | n/a contaminant(div) anml:primates 99 153 | seq_00145 1000 0,0,0,0,0,0,0 1000 | Homo sapiens 9606 anml:primates 1000 1000 224 | 9541 anml:primates 1000 981 112 | | | n/a contaminant(human) anml:primates 100 154 | seq_00146 1000 0,0,0,0,0,0,0 1000 | Homo sapiens 9606 anml:primates 1000 1000 217 | 9541 anml:primates 1000 1000 131 | | | n/a contaminant(human) anml:primates 100 155 | seq_00147 1000 0,0,0,0,0,0,0 1000 | Homo sapiens 9606 anml:primates 1000 1000 224 | 9541 anml:primates 1000 1000 191 | 73337 anml:mammals 839 822 79 | 9796 anml:mammals 839 770 74 | n/a contaminant(human) anml:primates 100 156 | seq_00148 1000 0,0,0,0,0,0,0 1000 | Homo sapiens 9606 anml:primates 1000 1000 224 | 9541 anml:primates 1000 999 161 | 9796 anml:mammals 609 609 63 | 144512 anml:nematodes 187 187 15 | n/a contaminant(human) anml:primates 100 157 | seq_00149 1000 0,0,0,0,0,0,0 1000 | Homo sapiens 9606 anml:primates 1000 1000 224 | 9541 anml:primates 1000 990 191 | | | n/a contaminant(human) anml:primates 100 158 | seq_00150 1000 0,0,500,0,0,0,0 1000 | Homo sapiens 9606 anml:primates 1000 1000 224 | 9541 anml:primates 1000 1000 80 | 291302 anml:mammals 1000 1000 71 | 9615 anml:mammals 1000 1000 68 | n/a contaminant(human) anml:primates 100 159 | seq_00151 1000 0,0,0,0,0,0,0 1000 | Homo sapiens 9606 anml:primates 1000 1000 224 | 9541 anml:primates 1000 1000 169 | 9796 anml:mammals 410 407 56 | 99487 anml:mammals 410 388 48 | n/a contaminant(human) anml:primates 100 160 | seq_00152 1000 0,0,0,0,0,0,0 1000 | Homo sapiens 9606 anml:primates 1000 1000 224 | 9541 anml:primates 1000 998 195 | 9796 anml:mammals 1000 988 102 | 9739 anml:mammals 1000 933 97 | n/a contaminant(human) anml:primates 100 161 | seq_00153 1000 0,0,0,0,0,0,0 1000 | Homo sapiens 9606 anml:primates 1000 1000 224 | 9541 anml:primates 1000 999 168 | 291302 anml:mammals 849 690 68 | 9837 anml:mammals 849 770 67 | n/a contaminant(human) anml:primates 100 162 | seq_00154 1000 0,0,0,0,0,0,0 1000 | Homo sapiens 9606 anml:primates 1000 1000 224 | 9541 anml:primates 1000 1000 163 | 9837 anml:mammals 354 285 46 | 27675 anml:mammals 354 210 45 | n/a contaminant(human) anml:primates 100 163 | seq_00155 1000 0,0,140,0,0,0,0 1000 | Homo sapiens 9606 anml:primates 1000 1000 224 | 67082 virs:eukaryotic viruses 624 613 83 | 9483 anml:primates 1000 919 77 | 73337 anml:mammals 496 496 48 | n/a contaminant(human) anml:primates 100 164 | seq_00156 1000 0,0,0,0,0,0,0 1000 | Homo sapiens 9606 anml:primates 1000 1000 224 | 9541 anml:primates 1000 1000 189 | 59479 anml:mammals 902 639 66 | 9796 anml:mammals 902 734 65 | n/a contaminant(human) anml:primates 100 165 | seq_00157 1000 0,0,0,0,0,0,0 1000 | Homo sapiens 9606 anml:primates 1000 1000 224 | 9541 anml:primates 1000 970 149 | 9796 anml:mammals 946 946 82 | | n/a contaminant(human) anml:primates 100 166 | seq_00158 1000 0,0,0,0,0,0,0 1000 | Homo sapiens 9606 anml:primates 1000 1000 224 | 9483 anml:primates 1000 991 116 | | | n/a contaminant(human) anml:primates 100 167 | seq_00159 1000 0,0,0,0,0,0,0 1000 | Homo sapiens 9606 anml:primates 1000 1000 224 | 9541 anml:primates 1000 1000 189 | 73337 anml:mammals 978 978 76 | | n/a contaminant(human) anml:primates 100 168 | seq_00160 1000 0,0,0,0,0,0,0 1000 | Homo sapiens 9606 anml:primates 1000 1000 224 | 9541 anml:primates 1000 1000 155 | 73337 anml:mammals 1000 937 79 | 9986 anml:rodents 937 937 66 | n/a contaminant(human) anml:primates 100 169 | seq_00161 1000 0,0,0,0,0,0,0 1000 | Homo sapiens 9606 anml:primates 1000 1000 224 | 9541 anml:primates 1000 959 178 | 9796 anml:mammals 643 643 69 | | n/a contaminant(human) anml:primates 100 170 | seq_00162 1000 0,0,0,0,0,0,0 1000 | Homo sapiens 9606 anml:primates 1000 1000 224 | 9541 anml:primates 1000 988 159 | 73337 anml:mammals 845 845 71 | 885580 anml:rodents 451 451 39 | n/a contaminant(human) anml:primates 100 171 | seq_00163 1000 0,0,0,0,0,0,0 1000 | Homo sapiens 9606 anml:primates 1000 1000 224 | 9541 anml:primates 1000 996 188 | 99487 anml:mammals 856 844 59 | 9669 anml:mammals 856 440 40 | n/a contaminant(human) anml:primates 100 172 | seq_00164 1000 0,0,0,0,0,0,0 1000 | Homo sapiens 9606 anml:primates 1000 1000 224 | 9541 anml:primates 1000 1000 176 | | | n/a contaminant(human) anml:primates 100 173 | seq_00165 1000 0,0,0,0,0,0,0 1000 | Homo sapiens 9606 anml:primates 1000 1000 224 | 9541 anml:primates 1000 1000 167 | 7209 anml:nematodes 257 257 42 | | n/a contaminant(human) anml:primates 100 174 | seq_00166 1000 0,0,0,0,0,0,0 1000 | Homo sapiens 9606 anml:primates 1000 1000 224 | 9541 anml:primates 1000 1000 170 | 73337 anml:mammals 964 964 80 | | n/a contaminant(human) anml:primates 100 175 | seq_00167 1000 0,0,0,0,0,0,0 1000 | Homo sapiens 9606 anml:primates 1000 1000 224 | 9541 anml:primates 1000 1000 206 | 73337 anml:mammals 989 847 88 | 9796 anml:mammals 989 864 82 | n/a contaminant(human) anml:primates 100 176 | seq_00168 1000 0,0,0,0,0,0,0 1000 | Homo sapiens 9606 anml:primates 1000 1000 224 | 9541 anml:primates 1000 979 174 | 9837 anml:mammals 672 672 60 | | n/a contaminant(human) anml:primates 100 177 | seq_00169 1000 0,0,0,0,0,0,0 1000 | Homo sapiens 9606 anml:primates 1000 1000 224 | 9541 anml:primates 1000 1000 156 | 99487 anml:mammals 1000 1000 94 | 9796 anml:mammals 1000 971 83 | n/a contaminant(human) anml:primates 100 178 | seq_00170 1000 0,0,0,0,0,0,0 1000 | Homo sapiens 9606 anml:primates 1000 1000 224 | 9541 anml:primates 1000 1000 161 | 9796 anml:mammals 986 986 68 | | n/a contaminant(human) anml:primates 100 179 | seq_00171 1000 0,0,0,0,0,0,0 1000 | Homo sapiens 9606 anml:primates 1000 1000 224 | 9541 anml:primates 1000 1000 191 | 73337 anml:mammals 724 681 66 | 9796 anml:mammals 724 633 63 | n/a contaminant(human) anml:primates 100 180 | seq_00172 1000 0,0,0,0,0,0,0 1000 | Homo sapiens 9606 anml:primates 1000 1000 224 | 9541 anml:primates 1000 973 150 | | | n/a contaminant(human) anml:primates 100 181 | seq_00173 1000 0,61,0,0,0,0,0 989 | Macaca fascicularis 9541 anml:primates 989 989 140 | 9606 anml:primates 989 705 73 | 1911570 prok:a-proteobacteria 241 241 32 | | n/a contaminant(human) anml:primates 99 182 | seq_00174 1000 0,0,0,0,0,0,0 1000 | Homo sapiens 9606 anml:primates 1000 1000 224 | 9541 anml:primates 1000 1000 172 | | | n/a contaminant(human) anml:primates 100 183 | seq_00175 1000 0,119,0,0,0,0,0 1000 | Homo sapiens 9606 anml:primates 1000 1000 224 | 9541 anml:primates 1000 1000 179 | 9796 anml:mammals 1000 990 70 | 51298 anml:mammals 1000 716 67 | n/a contaminant(human) anml:primates 100 184 | seq_00176 1000 0,0,0,0,0,0,0 1000 | Homo sapiens 9606 anml:primates 1000 1000 224 | 9541 anml:primates 1000 1000 204 | 885580 anml:rodents 842 842 127 | 9995 anml:rodents 842 745 120 | n/a contaminant(human) anml:primates 100 185 | seq_00177 1000 0,0,0,0,0,0,0 1000 | Homo sapiens 9606 anml:primates 1000 1000 224 | 9541 anml:primates 1000 1000 142 | 67082 virs:eukaryotic viruses 396 396 61 | | n/a contaminant(human) anml:primates 100 186 | seq_00178 1000 0,0,0,0,0,0,0 1000 | Homo sapiens 9606 anml:primates 1000 1000 224 | 9541 anml:primates 1000 1000 152 | 2809186 virs:eukaryotic viruses 341 341 62 | 73337 anml:mammals 488 328 60 | n/a contaminant(human) anml:primates 100 187 | seq_00179 1000 0,0,0,0,0,0,0 1000 | Homo sapiens 9606 anml:primates 1000 1000 224 | 9541 anml:primates 1000 1000 171 | | | n/a contaminant(human) anml:primates 100 188 | seq_00180 1000 0,0,0,0,0,0,0 1000 | Homo sapiens 9606 anml:primates 1000 1000 224 | 9541 anml:primates 1000 1000 181 | 6579 anml:molluscs 127 127 13 | | n/a contaminant(human) anml:primates 100 189 | seq_00181 1000 0,0,0,0,0,0,0 1000 | Homo sapiens 9606 anml:primates 1000 1000 224 | 9541 anml:primates 1000 1000 165 | 9685 anml:mammals 820 723 104 | 9615 anml:mammals 820 723 102 | n/a contaminant(human) anml:primates 100 190 | seq_00182 1000 0,0,0,0,0,0,0 1000 | Homo sapiens 9606 anml:primates 1000 1000 224 | 9541 anml:primates 1000 977 144 | | | n/a contaminant(human) anml:primates 100 191 | seq_00183 1000 0,0,0,0,0,0,0 1000 | Homo sapiens 9606 anml:primates 1000 1000 224 | 9541 anml:primates 1000 1000 147 | 73337 anml:mammals 912 818 83 | 9796 anml:mammals 912 837 77 | n/a contaminant(human) anml:primates 100 192 | seq_00184 1000 0,0,0,0,0,0,0 1000 | Homo sapiens 9606 anml:primates 1000 1000 224 | 9541 anml:primates 1000 1000 163 | 1911570 prok:a-proteobacteria 269 269 34 | | n/a contaminant(human) anml:primates 100 193 | seq_00185 1000 0,0,0,0,0,0,0 1000 | Homo sapiens 9606 anml:primates 1000 1000 224 | 9541 anml:primates 1000 990 168 | 9796 anml:mammals 803 803 62 | | n/a contaminant(human) anml:primates 100 194 | seq_00186 1000 0,0,0,0,0,0,0 1000 | Homo sapiens 9606 anml:primates 1000 1000 224 | 9541 anml:primates 1000 978 170 | | | n/a contaminant(human) anml:primates 100 195 | seq_00187 1000 0,0,0,0,0,0,0 1000 | Homo sapiens 9606 anml:primates 1000 1000 224 | 9541 anml:primates 1000 990 176 | | | n/a contaminant(human) anml:primates 100 196 | seq_00188 1000 0,0,0,0,0,0,0 1000 | Homo sapiens 9606 anml:primates 1000 1000 224 | 9541 anml:primates 1000 998 160 | | | n/a contaminant(human) anml:primates 100 197 | seq_00189 1000 0,0,0,0,0,0,0 1000 | Homo sapiens 9606 anml:primates 1000 1000 224 | 9541 anml:primates 1000 972 184 | 73337 anml:mammals 964 944 97 | 9739 anml:mammals 964 585 76 | n/a contaminant(human) anml:primates 100 198 | seq_00190 1000 0,0,380,0,0,0,0 1000 | Homo sapiens 9606 anml:primates 1000 1000 224 | 9541 anml:primates 1000 1000 186 | 9739 anml:mammals 999 741 104 | 73337 anml:mammals 999 623 99 | n/a contaminant(human) anml:primates 100 199 | seq_00191 1000 0,0,0,0,0,0,0 1000 | Homo sapiens 9606 anml:primates 1000 1000 224 | 9541 anml:primates 1000 994 154 | 9823 anml:mammals 988 930 78 | 9685 anml:mammals 988 961 77 | n/a contaminant(human) anml:primates 100 200 | seq_00192 1000 0,0,0,0,0,0,0 1000 | Homo sapiens 9606 anml:primates 1000 1000 224 | 9541 anml:primates 1000 1000 171 | 9796 anml:mammals 970 970 69 | 224129 anml:insects 368 368 23 | n/a contaminant(human) anml:primates 100 201 | seq_00193 1000 0,0,0,0,0,0,0 1000 | Homo sapiens 9606 anml:primates 1000 1000 224 | 9541 anml:primates 1000 1000 161 | 9796 anml:mammals 971 970 73 | 9704 anml:mammals 971 932 70 | n/a contaminant(human) anml:primates 100 202 | seq_00194 1000 0,0,0,0,0,0,0 1000 | Homo sapiens 9606 anml:primates 1000 1000 224 | 9541 anml:primates 1000 995 143 | | | n/a contaminant(human) anml:primates 100 203 | seq_00195 1000 0,0,0,0,0,0,0 1000 | Homo sapiens 9606 anml:primates 1000 1000 224 | 9541 anml:primates 1000 1000 145 | 9739 anml:mammals 539 519 53 | 9685 anml:mammals 539 274 48 | n/a contaminant(human) anml:primates 100 204 | seq_00196 1000 0,0,0,0,0,0,0 1000 | Homo sapiens 9606 anml:primates 1000 1000 224 | 9541 anml:primates 1000 997 144 | 9995 anml:rodents 974 974 75 | 9615 anml:mammals 826 826 68 | n/a contaminant(human) anml:primates 100 205 | seq_00197 1000 0,0,60,0,0,0,0 1000 | Homo sapiens 9606 anml:primates 1000 1000 224 | 9541 anml:primates 1000 936 121 | 50429 anml:basal metazoans 171 171 16 | 626713 fung:ascomycetes 114 114 12 | n/a contaminant(human) anml:primates 100 206 | seq_00198 1000 0,0,0,0,0,0,0 1000 | Homo sapiens 9606 anml:primates 1000 1000 224 | 9541 anml:primates 1000 1000 192 | 73337 anml:mammals 773 773 63 | | n/a contaminant(human) anml:primates 100 207 | seq_00199 1000 0,0,0,0,0,0,0 1000 | Homo sapiens 9606 anml:primates 1000 1000 224 | 9541 anml:primates 1000 1000 155 | 1911570 prok:a-proteobacteria 143 143 19 | | n/a contaminant(human) anml:primates 100 208 | seq_00200 1000 0,0,0,0,0,0,0 1000 | Homo sapiens 9606 anml:primates 1000 1000 163 | 9541 anml:primates 1000 976 153 | 73337 anml:mammals 1000 988 67 | 9739 anml:mammals 1000 994 65 | n/a contaminant(human) anml:primates 100 209 | seq_00201 1000 0,89,0,0,0,0,0 1000 | Homo sapiens 9606 anml:primates 1000 1000 224 | 9541 anml:primates 1000 1000 172 | | | n/a contaminant(human) anml:primates 100 210 | seq_00202 1000 0,58,0,0,0,0,0 960 | Homo sapiens 9606 anml:primates 960 766 98 | 9541 anml:primates 960 627 83 | 2759193 virs:prokaryotic viruses 190 190 29 | 1911570 prok:a-proteobacteria 131 131 25 | n/a contaminant(div) anml:primates 96 211 | seq_00203 1000 0,0,0,0,0,0,0 1000 | Macaca fascicularis 9541 anml:primates 1000 1000 144 | 9483 anml:primates 1000 787 79 | 67082 virs:eukaryotic viruses 568 568 56 | 2759193 virs:prokaryotic viruses 343 343 46 | n/a contaminant(div) anml:primates 100 212 | seq_00204 1000 0,0,0,0,0,0,0 1000 | Homo sapiens 9606 anml:primates 1000 1000 224 | 9541 anml:primates 1000 1000 190 | 9995 anml:rodents 983 941 127 | 99487 anml:mammals 1000 970 119 | n/a contaminant(human) anml:primates 100 213 | seq_00205 1000 0,0,0,0,0,0,0 1000 | Homo sapiens 9606 anml:primates 1000 1000 224 | 9541 anml:primates 1000 988 185 | | | n/a contaminant(human) anml:primates 100 214 | seq_00206 1000 0,0,0,0,0,0,0 1000 | Homo sapiens 9606 anml:primates 1000 1000 224 | 9541 anml:primates 1000 997 165 | 73337 anml:mammals 878 721 51 | 9995 anml:rodents 491 491 40 | n/a contaminant(human) anml:primates 100 215 | seq_00207 1000 0,0,0,0,0,0,0 1000 | Homo sapiens 9606 anml:primates 1000 1000 224 | 9541 anml:primates 1000 517 70 | | | n/a contaminant(human) anml:primates 100 216 | seq_00208 1000 0,0,0,0,0,0,0 1000 | Homo sapiens 9606 anml:primates 1000 1000 224 | 9541 anml:primates 1000 1000 179 | 9995 anml:rodents 723 579 88 | 9986 anml:rodents 723 688 82 | n/a contaminant(human) anml:primates 100 217 | seq_00209 1000 0,0,0,0,0,0,0 1000 | Homo sapiens 9606 anml:primates 1000 1000 224 | 9541 anml:primates 1000 1000 194 | | | n/a contaminant(human) anml:primates 100 218 | seq_00210 1000 0,0,600,0,0,0,0 1000 | Homo sapiens 9606 anml:primates 1000 1000 224 | 9541 anml:primates 1000 1000 217 | 9995 anml:rodents 999 999 113 | 73337 anml:mammals 999 967 103 | n/a contaminant(human) anml:primates 100 219 | seq_00211 1000 0,64,0,0,0,0,0 1000 | Homo sapiens 9606 anml:primates 1000 1000 224 | 9541 anml:primates 1000 757 138 | 67082 virs:eukaryotic viruses 422 422 59 | 5857 prst:alveolates 289 237 53 | n/a contaminant(human) anml:primates 100 220 | seq_00212 1000 0,0,0,0,0,0,0 979 | Homo sapiens 9606 anml:primates 979 963 101 | 9483 anml:primates 979 974 101 | | | n/a contaminant(div) anml:primates 98 221 | seq_00213 1000 0,0,0,0,0,0,0 1000 | Homo sapiens 9606 anml:primates 1000 1000 224 | 9541 anml:primates 1000 695 169 | 1911570 prok:a-proteobacteria 457 457 33 | 73337 anml:mammals 155 138 22 | n/a contaminant(human) anml:primates 100 222 | seq_00214 1000 0,128,0,0,0,0,0 1000 | Homo sapiens 9606 anml:primates 1000 1000 224 | 9541 anml:primates 1000 969 150 | | | n/a contaminant(human) anml:primates 100 223 | seq_00215 1000 0,0,0,0,0,0,0 1000 | Homo sapiens 9606 anml:primates 1000 1000 224 | 9541 anml:primates 1000 996 146 | 9796 anml:mammals 702 702 64 | | n/a contaminant(human) anml:primates 100 224 | seq_00216 1000 0,0,0,0,0,0,0 1000 | Homo sapiens 9606 anml:primates 1000 1000 224 | 9541 anml:primates 1000 1000 149 | | | n/a contaminant(human) anml:primates 100 225 | seq_00217 1000 0,0,0,0,0,0,0 1000 | Homo sapiens 9606 anml:primates 1000 1000 224 | 9541 anml:primates 1000 970 186 | 9796 anml:mammals 998 985 98 | 9615 anml:mammals 998 893 98 | n/a contaminant(human) anml:primates 100 226 | seq_00218 1000 0,0,0,0,0,0,0 1000 | Homo sapiens 9606 anml:primates 1000 1000 224 | 9541 anml:primates 1000 1000 166 | 9986 anml:rodents 742 742 60 | 9739 anml:mammals 229 229 34 | n/a contaminant(human) anml:primates 100 227 | seq_00219 1000 0,108,0,0,0,0,0 1000 | Pseudomonas aeruginosa 208964 prok:g-proteobacteria 1000 1000 224 | 2994495 prok:g-proteobacteria 1000 1000 214 | | | n/a contaminant(div) prok:g-proteobacteria 100 228 | seq_00220 1000 0,0,0,0,0,0,0 1000 | Pseudomonas paraeruginosa 2994495 prok:g-proteobacteria 1000 1000 224 | 208964 prok:g-proteobacteria 1000 1000 224 | 418699 prok:b-proteobacteria 1000 1000 127 | 395495 prok:b-proteobacteria 1000 1000 116 | n/a contaminant(div) prok:g-proteobacteria 100 229 | seq_00221 1000 0,0,0,0,0,0,0 1000 | Pseudomonas aeruginosa 208964 prok:g-proteobacteria 1000 1000 224 | 2994495 prok:g-proteobacteria 1000 1000 192 | 1123504 prok:b-proteobacteria 294 294 46 | 2100742 prok:verrucomicrobia 165 165 41 | n/a contaminant(div) prok:g-proteobacteria 100 230 | seq_00222 1000 0,0,0,0,0,0,0 1000 | Pseudomonas aeruginosa 208964 prok:g-proteobacteria 1000 1000 224 | 2994495 prok:g-proteobacteria 1000 1000 217 | 2725557 prok:b-proteobacteria 966 966 54 | 2816034 prok:a-proteobacteria 959 947 48 | n/a contaminant(div) prok:g-proteobacteria 100 231 | seq_00223 1000 0,0,0,0,0,0,0 1000 | Pseudomonas paraeruginosa 2994495 prok:g-proteobacteria 1000 1000 224 | 208964 prok:g-proteobacteria 1000 1000 224 | 2038277 prok:a-proteobacteria 848 562 70 | 944322 prok:a-proteobacteria 848 576 70 | n/a contaminant(div) prok:g-proteobacteria 100 232 | seq_00224 1000 0,0,0,0,0,0,0 1000 | Pseudomonas aeruginosa 208964 prok:g-proteobacteria 1000 1000 224 | 2994495 prok:g-proteobacteria 1000 945 191 | | | n/a contaminant(div) prok:g-proteobacteria 100 233 | seq_00225 1000 0,0,0,0,0,0,0 1000 | Pseudomonas aeruginosa 208964 prok:g-proteobacteria 1000 1000 224 | 2994495 prok:g-proteobacteria 1000 894 151 | 2692166 prok:b-proteobacteria 989 799 92 | 864073 prok:b-proteobacteria 989 792 83 | n/a contaminant(div) prok:g-proteobacteria 100 234 | seq_00226 1000 0,0,0,0,0,0,0 1000 | Pseudomonas aeruginosa 208964 prok:g-proteobacteria 1000 1000 224 | 2994495 prok:g-proteobacteria 1000 531 81 | 2714593 prst:algae 123 123 11 | 1563115 prst:alveolates 33 33 5 | n/a contaminant(div) prok:g-proteobacteria 100 235 | seq_00227 1000 0,0,0,0,0,0,0 1000 | Pseudomonas aeruginosa 208964 prok:g-proteobacteria 1000 1000 224 | 53408 prok:g-proteobacteria 1000 997 125 | | | n/a contaminant(div) prok:g-proteobacteria 100 236 | seq_00228 1000 0,0,0,0,0,0,0 1000 | Pseudomonas aeruginosa 208964 prok:g-proteobacteria 1000 1000 224 | 2994495 prok:g-proteobacteria 1000 1000 141 | | | n/a contaminant(div) prok:g-proteobacteria 100 237 | seq_00229 1000 0,0,0,0,0,0,0 1000 | Pseudomonas paraeruginosa 2994495 prok:g-proteobacteria 1000 1000 224 | 208964 prok:g-proteobacteria 1000 1000 224 | 28095 prok:b-proteobacteria 991 926 106 | 41899 prok:b-proteobacteria 991 949 99 | n/a contaminant(div) prok:g-proteobacteria 100 238 | seq_00230 1000 0,0,0,0,0,0,0 1000 | Pseudomonas aeruginosa 208964 prok:g-proteobacteria 1000 1000 224 | 2994495 prok:g-proteobacteria 1000 979 131 | | | n/a contaminant(div) prok:g-proteobacteria 100 239 | seq_00231 1000 0,0,0,0,0,0,0 1000 | Pseudomonas aeruginosa 208964 prok:g-proteobacteria 1000 1000 224 | 2994495 prok:g-proteobacteria 1000 1000 197 | 1207504 prok:b-proteobacteria 1000 980 95 | 488730 prok:b-proteobacteria 1000 1000 92 | n/a contaminant(div) prok:g-proteobacteria 100 240 | seq_00232 1000 0,0,0,0,0,0,0 1000 | Pseudomonas aeruginosa 208964 prok:g-proteobacteria 1000 1000 224 | 2994495 prok:g-proteobacteria 1000 965 160 | | | n/a contaminant(div) prok:g-proteobacteria 100 241 | seq_00233 1000 0,0,0,0,0,0,0 1000 | Pseudomonas paraeruginosa 2994495 prok:g-proteobacteria 1000 1000 224 | 208964 prok:g-proteobacteria 1000 1000 224 | | | n/a contaminant(div) prok:g-proteobacteria 100 242 | seq_00234 1000 0,0,0,0,0,0,0 1000 | Pseudomonas paraeruginosa 2994495 prok:g-proteobacteria 1000 1000 224 | 208964 prok:g-proteobacteria 1000 1000 224 | | | n/a contaminant(div) prok:g-proteobacteria 100 243 | seq_00235 1000 0,0,0,0,0,0,0 1000 | Pseudomonas aeruginosa 208964 prok:g-proteobacteria 1000 1000 224 | 2994495 prok:g-proteobacteria 1000 945 178 | 2812555 prok:a-proteobacteria 761 761 49 | 754064 virs:eukaryotic viruses 78 78 9 | n/a contaminant(div) prok:g-proteobacteria 100 244 | seq_00236 1000 0,0,0,0,0,0,0 1000 | Pseudomonas aeruginosa 208964 prok:g-proteobacteria 1000 1000 224 | | | | n/a contaminant(div) prok:g-proteobacteria 100 245 | seq_00237 1000 0,0,0,0,0,0,0 1000 | Pseudomonas paraeruginosa 2994495 prok:g-proteobacteria 1000 1000 224 | 208964 prok:g-proteobacteria 1000 1000 224 | | | n/a contaminant(div) prok:g-proteobacteria 100 246 | seq_00238 1000 0,0,0,0,0,0,0 1000 | Pseudomonas aeruginosa 208964 prok:g-proteobacteria 1000 1000 224 | 2994495 prok:g-proteobacteria 1000 1000 224 | 1895859 prok:b-proteobacteria 982 961 113 | 2099377 prok:b-proteobacteria 982 889 96 | n/a contaminant(div) prok:g-proteobacteria 100 247 | seq_00239 1000 0,0,0,0,0,0,0 1000 | Pseudomonas aeruginosa 208964 prok:g-proteobacteria 1000 1000 224 | 2994495 prok:g-proteobacteria 1000 1000 224 | | | n/a contaminant(div) prok:g-proteobacteria 100 248 | seq_00240 1000 0,0,0,0,0,0,0 1000 | Pseudomonas aeruginosa 208964 prok:g-proteobacteria 1000 1000 224 | 2994495 prok:g-proteobacteria 1000 1000 223 | 2917965 prok:b-proteobacteria 830 829 86 | 76731 prok:b-proteobacteria 830 641 74 | n/a contaminant(div) prok:g-proteobacteria 100 249 | seq_00241 1000 0,0,0,0,0,0,0 1000 | Pseudomonas aeruginosa 208964 prok:g-proteobacteria 1000 1000 224 | 2994495 prok:g-proteobacteria 1000 996 171 | 85698 prok:b-proteobacteria 999 975 86 | 2478468 prok:b-proteobacteria 999 951 85 | n/a contaminant(div) prok:g-proteobacteria 100 250 | seq_00242 1000 0,0,0,0,0,0,0 1000 | Pseudomonas aeruginosa 208964 prok:g-proteobacteria 1000 1000 224 | 2994495 prok:g-proteobacteria 1000 478 59 | | | n/a contaminant(div) prok:g-proteobacteria 100 251 | seq_00243 1000 0,0,0,0,0,0,0 1000 | Pseudomonas aeruginosa 208964 prok:g-proteobacteria 1000 1000 224 | 2994495 prok:g-proteobacteria 1000 1000 151 | 6573 anml:molluscs 140 140 13 | | n/a contaminant(div) prok:g-proteobacteria 100 252 | seq_00244 1000 0,0,0,0,0,0,0 1000 | Pseudomonas aeruginosa 208964 prok:g-proteobacteria 1000 1000 224 | 2994495 prok:g-proteobacteria 1000 1000 183 | 1872419 prok:a-proteobacteria 999 999 61 | 2895469 prok:b-proteobacteria 997 997 54 | n/a contaminant(div) prok:g-proteobacteria 100 253 | seq_00245 1000 0,0,0,0,0,0,0 1000 | Pseudomonas paraeruginosa 2994495 prok:g-proteobacteria 1000 1000 224 | 208964 prok:g-proteobacteria 1000 1000 224 | 1122132 prok:a-proteobacteria 972 971 62 | 410841 prok:a-proteobacteria 972 941 60 | n/a contaminant(div) prok:g-proteobacteria 100 254 | seq_00246 1000 0,0,0,0,0,0,0 1000 | Pseudomonas aeruginosa 208964 prok:g-proteobacteria 1000 1000 224 | 2994495 prok:g-proteobacteria 1000 1000 224 | | | n/a contaminant(div) prok:g-proteobacteria 100 255 | seq_00247 1000 0,0,0,0,0,0,0 1000 | Pseudomonas aeruginosa 208964 prok:g-proteobacteria 1000 1000 224 | 2994495 prok:g-proteobacteria 1000 869 182 | | | n/a contaminant(div) prok:g-proteobacteria 100 256 | seq_00248 1000 0,0,0,0,0,0,0 1000 | Pseudomonas aeruginosa 208964 prok:g-proteobacteria 1000 1000 224 | 2994495 prok:g-proteobacteria 1000 1000 113 | 857265 prok:b-proteobacteria 1000 1000 55 | | n/a contaminant(div) prok:g-proteobacteria 100 257 | seq_00249 1000 0,0,0,0,0,0,0 1000 | Pseudomonas aeruginosa 208964 prok:g-proteobacteria 1000 1000 224 | 2994495 prok:g-proteobacteria 1000 978 160 | 1926495 prok:b-proteobacteria 406 406 48 | 2696567 prok:high GC Gram+ 405 405 37 | n/a contaminant(div) prok:g-proteobacteria 100 258 | seq_00250 1000 0,0,0,0,0,0,0 1000 | Pseudomonas aeruginosa 208964 prok:g-proteobacteria 1000 1000 224 | 2994495 prok:g-proteobacteria 1000 1000 144 | | | n/a contaminant(div) prok:g-proteobacteria 100 259 | seq_00251 1000 0,0,0,0,0,0,0 1000 | Pseudomonas aeruginosa 208964 prok:g-proteobacteria 1000 1000 224 | 2994495 prok:g-proteobacteria 1000 714 104 | | | n/a contaminant(div) prok:g-proteobacteria 100 260 | seq_00252 1000 0,0,0,0,0,0,0 1000 | Pseudomonas aeruginosa 208964 prok:g-proteobacteria 1000 1000 224 | 2994495 prok:g-proteobacteria 1000 1000 111 | | | n/a contaminant(div) prok:g-proteobacteria 100 261 | seq_00253 1000 0,0,0,0,0,0,0 1000 | Pseudomonas aeruginosa 208964 prok:g-proteobacteria 1000 1000 224 | 2994495 prok:g-proteobacteria 1000 996 100 | | | n/a contaminant(div) prok:g-proteobacteria 100 262 | seq_00254 1000 0,0,0,0,0,0,0 1000 | Pseudomonas aeruginosa 208964 prok:g-proteobacteria 1000 1000 224 | 2994495 prok:g-proteobacteria 1000 972 136 | | | n/a contaminant(div) prok:g-proteobacteria 100 263 | seq_00255 1000 0,0,0,0,0,0,0 1000 | Pseudomonas aeruginosa 208964 prok:g-proteobacteria 1000 1000 224 | 2994495 prok:g-proteobacteria 1000 994 190 | | | n/a contaminant(div) prok:g-proteobacteria 100 264 | seq_00256 1000 0,0,0,0,0,0,0 1000 | Pseudomonas aeruginosa 208964 prok:g-proteobacteria 1000 1000 224 | 2994495 prok:g-proteobacteria 1000 969 155 | 1842532 prok:d-proteobacteria 645 645 52 | 392333 prok:d-proteobacteria 645 439 41 | n/a contaminant(div) prok:g-proteobacteria 100 265 | seq_00257 1000 0,0,0,0,0,0,0 1000 | Pseudomonas aeruginosa 208964 prok:g-proteobacteria 1000 1000 224 | 2994495 prok:g-proteobacteria 1000 1000 203 | 354355 prok:CFB group bacteria 567 567 41 | 54913 prok:firmicutes 573 567 38 | n/a contaminant(div) prok:g-proteobacteria 100 266 | seq_00258 1000 0,0,0,0,0,0,0 1000 | Pseudomonas aeruginosa 208964 prok:g-proteobacteria 1000 1000 224 | 2994495 prok:g-proteobacteria 1000 1000 193 | | | n/a contaminant(div) prok:g-proteobacteria 100 267 | seq_00259 1000 0,0,0,0,0,0,0 1000 | Pseudomonas aeruginosa 208964 prok:g-proteobacteria 1000 1000 224 | 2994495 prok:g-proteobacteria 1000 973 133 | | | n/a contaminant(div) prok:g-proteobacteria 100 268 | seq_00260 1000 0,0,0,0,0,0,0 1000 | Pseudomonas aeruginosa 208964 prok:g-proteobacteria 1000 1000 224 | | | | n/a contaminant(div) prok:g-proteobacteria 100 269 | seq_00261 1000 0,0,0,0,0,0,0 1000 | Pseudomonas aeruginosa 208964 prok:g-proteobacteria 1000 1000 224 | 2892326 prok:g-proteobacteria 1000 990 85 | | | n/a contaminant(div) prok:g-proteobacteria 100 270 | seq_00262 1000 0,0,0,0,0,0,0 1000 | Pseudomonas aeruginosa 208964 prok:g-proteobacteria 1000 1000 224 | | | | n/a contaminant(div) prok:g-proteobacteria 100 271 | seq_00263 1000 0,0,0,0,0,0,0 1000 | Pseudomonas paraeruginosa 2994495 prok:g-proteobacteria 1000 1000 224 | 208964 prok:g-proteobacteria 1000 1000 224 | | | n/a contaminant(div) prok:g-proteobacteria 100 272 | seq_00264 1000 0,0,0,0,0,0,0 1000 | Pseudomonas aeruginosa 208964 prok:g-proteobacteria 1000 1000 224 | 2994495 prok:g-proteobacteria 1000 999 174 | | | n/a contaminant(div) prok:g-proteobacteria 100 273 | seq_00265 1000 0,0,0,0,0,0,0 1000 | Pseudomonas aeruginosa 208964 prok:g-proteobacteria 1000 1000 224 | 2994495 prok:g-proteobacteria 1000 1000 184 | 2838590 prok:firmicutes 710 710 49 | | n/a contaminant(div) prok:g-proteobacteria 100 274 | seq_00266 1000 0,0,0,0,0,0,0 1000 | Pseudomonas aeruginosa 208964 prok:g-proteobacteria 1000 1000 224 | 2994495 prok:g-proteobacteria 1000 1000 137 | 80866 prok:b-proteobacteria 321 321 52 | 1946130 prok:a-proteobacteria 338 338 44 | n/a contaminant(div) prok:g-proteobacteria 100 275 | seq_00267 1000 0,0,0,0,0,0,0 1000 | Pseudomonas aeruginosa 208964 prok:g-proteobacteria 1000 1000 224 | | | | n/a contaminant(div) prok:g-proteobacteria 100 276 | seq_00268 1000 0,0,0,0,0,0,0 1000 | Pseudomonas aeruginosa 208964 prok:g-proteobacteria 1000 1000 224 | 2994495 prok:g-proteobacteria 1000 1000 136 | | | n/a contaminant(div) prok:g-proteobacteria 100 277 | seq_00269 1000 0,0,0,0,0,0,0 1000 | Pseudomonas aeruginosa 208964 prok:g-proteobacteria 1000 1000 224 | 2994495 prok:g-proteobacteria 1000 1000 201 | | | n/a contaminant(div) prok:g-proteobacteria 100 278 | seq_00270 1000 0,0,0,0,0,0,0 1000 | Pseudomonas paraeruginosa 2994495 prok:g-proteobacteria 1000 1000 224 | 208964 prok:g-proteobacteria 1000 1000 224 | | | n/a contaminant(div) prok:g-proteobacteria 100 279 | seq_00271 1000 0,0,0,0,0,0,0 1000 | Pseudomonas aeruginosa 208964 prok:g-proteobacteria 1000 1000 224 | 2994495 prok:g-proteobacteria 1000 999 223 | | | n/a contaminant(div) prok:g-proteobacteria 100 280 | seq_00272 1000 0,0,0,0,0,0,0 1000 | Pseudomonas paraeruginosa 2994495 prok:g-proteobacteria 1000 1000 224 | 208964 prok:g-proteobacteria 1000 1000 224 | 2835787 prok:a-proteobacteria 226 226 36 | | n/a contaminant(div) prok:g-proteobacteria 100 281 | seq_00273 1000 0,0,0,0,0,0,0 1000 | Pseudomonas aeruginosa 208964 prok:g-proteobacteria 1000 1000 224 | 2994495 prok:g-proteobacteria 1000 1000 224 | 367825 prok:b-proteobacteria 948 913 81 | 85698 prok:b-proteobacteria 948 850 79 | n/a contaminant(div) prok:g-proteobacteria 100 282 | seq_00274 1000 0,0,0,0,0,0,0 1000 | Pseudomonas aeruginosa 208964 prok:g-proteobacteria 1000 1000 224 | 2026947 plnt:green algae 137 137 13 | | | n/a contaminant(div) prok:g-proteobacteria 100 283 | seq_00275 1000 0,0,0,0,0,0,0 1000 | Pseudomonas aeruginosa 208964 prok:g-proteobacteria 1000 1000 224 | 2487519 prok:g-proteobacteria 1000 959 55 | | | n/a contaminant(div) prok:g-proteobacteria 100 284 | seq_00276 1000 0,0,0,0,0,0,0 1000 | Pseudomonas aeruginosa 208964 prok:g-proteobacteria 1000 1000 224 | 622671 prok:d-proteobacteria 689 689 47 | 80868 prok:b-proteobacteria 645 552 46 | 343013 prok:b-proteobacteria 645 552 45 | n/a contaminant(div) prok:g-proteobacteria 100 285 | seq_00277 1000 0,0,0,0,0,0,0 1000 | Pseudomonas aeruginosa 208964 prok:g-proteobacteria 1000 1000 224 | | | | n/a contaminant(div) prok:g-proteobacteria 100 286 | seq_00278 1000 0,0,0,0,0,0,0 1000 | Pseudomonas aeruginosa 208964 prok:g-proteobacteria 1000 1000 224 | 2994495 prok:g-proteobacteria 1000 1000 117 | 1287735 prok:b-proteobacteria 1000 990 80 | 1177755 prok:a-proteobacteria 1000 1000 79 | n/a contaminant(div) prok:g-proteobacteria 100 287 | seq_00279 1000 0,0,0,0,0,0,0 1000 | Pseudomonas paraeruginosa 2994495 prok:g-proteobacteria 1000 1000 224 | 208964 prok:g-proteobacteria 1000 1000 224 | 85698 prok:b-proteobacteria 1000 990 90 | 72557 prok:b-proteobacteria 1000 837 86 | n/a contaminant(div) prok:g-proteobacteria 100 288 | seq_00280 1000 0,0,0,0,0,0,0 1000 | Pseudomonas aeruginosa 208964 prok:g-proteobacteria 1000 1000 224 | 2994495 prok:g-proteobacteria 1000 1000 124 | 63592 plnt:green algae 128 128 10 | | n/a contaminant(div) prok:g-proteobacteria 100 289 | seq_00281 1000 0,0,0,0,0,0,0 1000 | Pseudomonas aeruginosa 208964 prok:g-proteobacteria 1000 1000 224 | 2892326 prok:g-proteobacteria 1000 999 97 | 2528245 prok:a-proteobacteria 956 946 59 | 1123069 prok:a-proteobacteria 956 866 59 | n/a contaminant(div) prok:g-proteobacteria 100 290 | seq_00282 1000 0,0,0,0,0,0,0 1000 | Pseudomonas aeruginosa 208964 prok:g-proteobacteria 1000 1000 224 | 587753 prok:g-proteobacteria 1000 987 61 | | | n/a contaminant(div) prok:g-proteobacteria 100 291 | seq_00283 1000 0,0,0,0,0,0,0 1000 | Pseudomonas aeruginosa 208964 prok:g-proteobacteria 1000 1000 224 | 2994495 prok:g-proteobacteria 1000 1000 191 | | | n/a contaminant(div) prok:g-proteobacteria 100 292 | seq_00284 1000 0,0,0,0,0,0,0 1000 | Pseudomonas aeruginosa 208964 prok:g-proteobacteria 1000 1000 224 | 2994495 prok:g-proteobacteria 1000 1000 150 | | | n/a contaminant(div) prok:g-proteobacteria 100 293 | seq_00285 1000 0,0,0,0,0,0,0 1000 | Pseudomonas aeruginosa 208964 prok:g-proteobacteria 1000 1000 224 | 2994495 prok:g-proteobacteria 1000 1000 216 | | | n/a contaminant(div) prok:g-proteobacteria 100 294 | seq_00286 1000 0,0,0,0,0,0,0 1000 | Pseudomonas aeruginosa 208964 prok:g-proteobacteria 1000 1000 224 | 2994495 prok:g-proteobacteria 1000 993 183 | 2016596 prok:b-proteobacteria 972 894 86 | 1629404 prok:b-proteobacteria 972 972 85 | n/a contaminant(div) prok:g-proteobacteria 100 295 | seq_00287 1000 0,0,0,0,0,0,0 1000 | Pseudomonas aeruginosa 208964 prok:g-proteobacteria 1000 1000 224 | 2994495 prok:g-proteobacteria 1000 1000 140 | | | n/a contaminant(div) prok:g-proteobacteria 100 296 | seq_00288 1000 0,0,0,0,0,0,0 1000 | Pseudomonas aeruginosa 208964 prok:g-proteobacteria 1000 1000 224 | 2994495 prok:g-proteobacteria 1000 999 177 | 543639 anml:insects 169 169 15 | | n/a contaminant(div) prok:g-proteobacteria 100 297 | seq_00289 1000 0,0,0,0,0,0,0 1000 | Pseudomonas aeruginosa 208964 prok:g-proteobacteria 1000 1000 224 | 2994495 prok:g-proteobacteria 1000 1000 171 | 376150 prok:d-proteobacteria 769 721 67 | 2890059 prok:bacteria 987 984 65 | n/a contaminant(div) prok:g-proteobacteria 100 298 | seq_00290 1000 0,0,0,0,0,0,0 1000 | Pseudomonas aeruginosa 208964 prok:g-proteobacteria 1000 1000 224 | 1608994 prok:g-proteobacteria 1000 853 68 | | | n/a contaminant(div) prok:g-proteobacteria 100 299 | seq_00291 1000 0,0,0,0,0,0,0 1000 | Pseudomonas aeruginosa 208964 prok:g-proteobacteria 1000 1000 224 | 2994495 prok:g-proteobacteria 1000 1000 181 | | | n/a contaminant(div) prok:g-proteobacteria 100 300 | seq_00292 1000 0,0,0,0,0,0,0 1000 | Pseudomonas aeruginosa 208964 prok:g-proteobacteria 1000 1000 224 | 2994495 prok:g-proteobacteria 1000 1000 134 | | | n/a contaminant(div) prok:g-proteobacteria 100 301 | seq_00293 1000 0,0,0,0,0,0,0 1000 | Pseudomonas aeruginosa 208964 prok:g-proteobacteria 1000 1000 224 | 2994495 prok:g-proteobacteria 1000 1000 223 | 1121033 prok:a-proteobacteria 716 716 72 | | n/a contaminant(div) prok:g-proteobacteria 100 302 | seq_00294 1000 0,0,0,0,0,0,0 1000 | Pseudomonas aeruginosa 208964 prok:g-proteobacteria 1000 1000 224 | 2994495 prok:g-proteobacteria 1000 1000 224 | | | n/a contaminant(div) prok:g-proteobacteria 100 303 | seq_00295 1000 0,0,0,0,0,0,0 1000 | Pseudomonas aeruginosa 208964 prok:g-proteobacteria 1000 1000 224 | 2994495 prok:g-proteobacteria 1000 1000 160 | | | n/a contaminant(div) prok:g-proteobacteria 100 304 | seq_00296 1000 0,0,0,0,0,0,0 1000 | Pseudomonas aeruginosa 208964 prok:g-proteobacteria 1000 1000 224 | 2994495 prok:g-proteobacteria 1000 1000 191 | 1965230 prok:b-proteobacteria 942 942 54 | | n/a contaminant(div) prok:g-proteobacteria 100 305 | seq_00297 1000 0,0,0,0,0,0,0 1000 | Pseudomonas aeruginosa 208964 prok:g-proteobacteria 1000 1000 224 | 2994495 prok:g-proteobacteria 1000 1000 190 | 1880898 prok:b-proteobacteria 1000 1000 77 | 744406 prok:b-proteobacteria 1000 988 75 | n/a contaminant(div) prok:g-proteobacteria 100 306 | seq_00298 1000 0,0,0,0,0,0,0 1000 | Pseudomonas aeruginosa 208964 prok:g-proteobacteria 1000 1000 224 | 2994495 prok:g-proteobacteria 1000 1000 214 | 1287735 prok:b-proteobacteria 411 250 52 | 72557 prok:b-proteobacteria 411 400 47 | n/a contaminant(div) prok:g-proteobacteria 100 307 | seq_00299 1000 0,0,0,0,0,0,0 1000 | Pseudomonas aeruginosa 208964 prok:g-proteobacteria 1000 1000 224 | 2994495 prok:g-proteobacteria 1000 1000 220 | 1349767 prok:b-proteobacteria 448 287 49 | 1462994 prok:b-proteobacteria 448 282 47 | n/a contaminant(div) prok:g-proteobacteria 100 308 | seq_00300 1000 0,0,0,0,0,0,0 1000 | Pseudomonas aeruginosa 208964 prok:g-proteobacteria 1000 1000 224 | 2994495 prok:g-proteobacteria 1000 980 190 | 134375 prok:b-proteobacteria 1000 985 85 | 1389932 prok:b-proteobacteria 1000 1000 84 | n/a contaminant(div) prok:g-proteobacteria 100 309 | seq_00301 1000 0,0,0,0,0,0,0 1000 | Pseudomonas aeruginosa 208964 prok:g-proteobacteria 1000 1000 224 | 2994495 prok:g-proteobacteria 1000 1000 145 | 1917180 prok:firmicutes 917 805 45 | 2780093 prok:firmicutes 917 790 43 | n/a contaminant(div) prok:g-proteobacteria 100 310 | seq_00302 1000 0,0,0,0,0,0,0 1000 | Pseudomonas aeruginosa 208964 prok:g-proteobacteria 1000 1000 224 | 2994495 prok:g-proteobacteria 1000 1000 151 | 43667 prok:high GC Gram+ 646 646 39 | | n/a contaminant(div) prok:g-proteobacteria 100 311 | seq_00303 1000 0,0,0,0,0,0,0 1000 | Pseudomonas aeruginosa 208964 prok:g-proteobacteria 1000 1000 224 | 2994495 prok:g-proteobacteria 1000 975 166 | | | n/a contaminant(div) prok:g-proteobacteria 100 312 | seq_00304 1000 0,0,0,0,0,0,0 1000 | Pseudomonas aeruginosa 208964 prok:g-proteobacteria 1000 1000 224 | 1947342 prok:g-proteobacteria 1000 203 47 | | | n/a contaminant(div) prok:g-proteobacteria 100 313 | seq_00305 1000 0,0,0,0,0,0,0 1000 | Pseudomonas aeruginosa 208964 prok:g-proteobacteria 1000 1000 224 | 1247936 prok:b-proteobacteria 1000 999 60 | 292 prok:b-proteobacteria 1000 970 55 | 1215103 prok:g-proteobacteria 1000 1000 54 | n/a contaminant(div) prok:g-proteobacteria 100 314 | seq_00306 1000 0,0,0,0,0,0,0 1000 | Pseudomonas aeruginosa 208964 prok:g-proteobacteria 1000 1000 224 | 2994495 prok:g-proteobacteria 1000 1000 130 | 2743358 prok:b-proteobacteria 1000 944 74 | 60549 prok:b-proteobacteria 1000 836 72 | n/a contaminant(div) prok:g-proteobacteria 100 315 | seq_00307 1000 0,0,0,0,0,0,0 1000 | Pseudomonas aeruginosa 208964 prok:g-proteobacteria 1000 1000 224 | 2994495 prok:g-proteobacteria 1000 997 115 | 2565930 prok:b-proteobacteria 998 715 72 | 123899 prok:b-proteobacteria 998 712 67 | n/a contaminant(div) prok:g-proteobacteria 100 316 | seq_00308 1000 0,0,0,0,0,0,0 1000 | Pseudomonas aeruginosa 208964 prok:g-proteobacteria 1000 1000 224 | 2994495 prok:g-proteobacteria 1000 998 138 | 543639 anml:insects 106 106 10 | | n/a contaminant(div) prok:g-proteobacteria 100 317 | seq_00309 1000 0,0,0,0,0,0,0 1000 | Pseudomonas aeruginosa 208964 prok:g-proteobacteria 1000 1000 224 | 2994495 prok:g-proteobacteria 1000 1000 127 | | | n/a contaminant(div) prok:g-proteobacteria 100 318 | seq_00310 1000 0,0,0,0,0,0,0 1000 | Pseudomonas aeruginosa 208964 prok:g-proteobacteria 1000 1000 224 | 2994495 prok:g-proteobacteria 1000 1000 136 | | | n/a contaminant(div) prok:g-proteobacteria 100 319 | seq_00311 1000 0,0,0,0,0,0,0 1000 | Pseudomonas aeruginosa 208964 prok:g-proteobacteria 1000 1000 224 | 2994495 prok:g-proteobacteria 1000 1000 224 | 2795217 prok:b-proteobacteria 649 491 71 | 1947372 prok:b-proteobacteria 649 451 68 | n/a contaminant(div) prok:g-proteobacteria 100 320 | seq_00312 1000 0,0,0,0,0,0,0 1000 | Pseudomonas aeruginosa 208964 prok:g-proteobacteria 1000 1000 224 | 2994495 prok:g-proteobacteria 1000 1000 186 | | | n/a contaminant(div) prok:g-proteobacteria 100 321 | seq_00313 1000 0,0,0,0,0,0,0 1000 | Pseudomonas aeruginosa 208964 prok:g-proteobacteria 1000 1000 224 | 2994495 prok:g-proteobacteria 1000 816 133 | 2758568 prok:b-proteobacteria 445 417 24 | 66376 prok:high GC Gram+ 458 417 22 | n/a contaminant(div) prok:g-proteobacteria 100 322 | seq_00314 1000 0,0,0,0,0,0,0 1000 | Pseudomonas paraeruginosa 2994495 prok:g-proteobacteria 1000 1000 224 | 208964 prok:g-proteobacteria 1000 1000 224 | 28095 prok:b-proteobacteria 1000 898 94 | 288768 prok:b-proteobacteria 1000 994 89 | n/a contaminant(div) prok:g-proteobacteria 100 323 | seq_00315 1000 0,0,0,0,0,0,0 1000 | Pseudomonas aeruginosa 208964 prok:g-proteobacteria 1000 1000 224 | 2994495 prok:g-proteobacteria 1000 1000 209 | | | n/a contaminant(div) prok:g-proteobacteria 100 324 | seq_00316 1000 0,0,0,0,0,0,0 1000 | Pseudomonas aeruginosa 208964 prok:g-proteobacteria 1000 1000 224 | 2994495 prok:g-proteobacteria 1000 999 223 | | | n/a contaminant(div) prok:g-proteobacteria 100 325 | seq_00317 1000 0,0,0,0,0,0,0 1000 | Pseudomonas aeruginosa 208964 prok:g-proteobacteria 1000 1000 224 | 2593654 prok:g-proteobacteria 1000 1000 89 | | | n/a contaminant(div) prok:g-proteobacteria 100 326 | seq_00318 1000 0,0,0,0,0,0,0 1000 | Pseudomonas aeruginosa 208964 prok:g-proteobacteria 1000 1000 224 | 2994495 prok:g-proteobacteria 1000 1000 224 | | | n/a contaminant(div) prok:g-proteobacteria 100 327 | seq_00319 1000 0,0,0,0,0,0,0 1000 | Pseudomonas aeruginosa 208964 prok:g-proteobacteria 1000 1000 224 | 366289 prok:g-proteobacteria 1000 993 116 | 1287737 prok:b-proteobacteria 1000 977 73 | 1120983 prok:a-proteobacteria 984 984 72 | n/a contaminant(div) prok:g-proteobacteria 100 328 | seq_00320 1000 0,0,0,0,0,0,0 1000 | Pseudomonas aeruginosa 208964 prok:g-proteobacteria 1000 1000 224 | 2892326 prok:g-proteobacteria 1000 999 114 | 2653893 prok:b-proteobacteria 871 781 78 | 1851544 prok:b-proteobacteria 871 705 72 | n/a contaminant(div) prok:g-proteobacteria 100 329 | seq_00321 1000 0,0,0,0,0,0,0 1000 | Pseudomonas aeruginosa 208964 prok:g-proteobacteria 1000 1000 224 | 2994495 prok:g-proteobacteria 1000 997 223 | 50259 prok:b-proteobacteria 998 996 106 | 2499835 prok:b-proteobacteria 998 971 104 | n/a contaminant(div) prok:g-proteobacteria 100 330 | seq_00322 1000 0,0,0,0,0,0,0 1000 | Pseudomonas aeruginosa 208964 prok:g-proteobacteria 1000 963 217 | 2994495 prok:g-proteobacteria 1000 831 196 | 2710757 prok:d-proteobacteria 214 214 23 | | n/a contaminant(div) prok:g-proteobacteria 100 331 | seq_00323 1000 0,0,0,0,0,0,0 1000 | Pseudomonas aeruginosa 208964 prok:g-proteobacteria 1000 1000 224 | 2994495 prok:g-proteobacteria 1000 1000 132 | 504468 prok:a-proteobacteria 999 978 71 | 501024 prok:a-proteobacteria 999 984 63 | n/a contaminant(div) prok:g-proteobacteria 100 332 | seq_00324 1000 0,0,0,0,0,0,0 1000 | Pseudomonas aeruginosa 208964 prok:g-proteobacteria 1000 1000 224 | 2912055 prok:g-proteobacteria 1000 346 55 | 217204 prok:b-proteobacteria 373 373 36 | | n/a contaminant(div) prok:g-proteobacteria 100 333 | seq_00325 1000 0,0,0,0,0,0,0 1000 | Pseudomonas aeruginosa 208964 prok:g-proteobacteria 1000 1000 224 | 2994495 prok:g-proteobacteria 1000 999 169 | 2666084 prok:b-proteobacteria 1000 964 67 | 1110502 prok:a-proteobacteria 900 900 58 | n/a contaminant(div) prok:g-proteobacteria 100 334 | seq_00326 1000 0,0,0,0,0,0,0 1000 | Pseudomonas aeruginosa 208964 prok:g-proteobacteria 1000 1000 224 | 2994495 prok:g-proteobacteria 1000 1000 220 | 2796142 prok:a-proteobacteria 722 722 44 | | n/a contaminant(div) prok:g-proteobacteria 100 335 | seq_00327 1000 0,0,0,0,0,0,0 1000 | Pseudomonas aeruginosa 208964 prok:g-proteobacteria 1000 1000 224 | 2994495 prok:g-proteobacteria 1000 991 92 | | | n/a contaminant(div) prok:g-proteobacteria 100 336 | seq_00328 1000 0,0,0,0,0,0,0 1000 | Pseudomonas paraeruginosa 2994495 prok:g-proteobacteria 1000 1000 224 | 208964 prok:g-proteobacteria 1000 1000 224 | 29545 prok:b-proteobacteria 1000 1000 92 | 1781167 prok:b-proteobacteria 1000 987 69 | n/a contaminant(div) prok:g-proteobacteria 100 337 | seq_00329 1000 0,0,0,0,0,0,0 1000 | Pseudomonas aeruginosa 208964 prok:g-proteobacteria 1000 1000 224 | 2994495 prok:g-proteobacteria 1000 998 119 | 350701 prok:b-proteobacteria 999 931 69 | 85698 prok:b-proteobacteria 999 635 68 | n/a contaminant(div) prok:g-proteobacteria 100 338 | seq_00330 1000 0,113,0,0,0,0,0 1000 | Pseudomonas aeruginosa 208964 prok:g-proteobacteria 1000 1000 224 | 2994495 prok:g-proteobacteria 1000 991 155 | 8030 anml:fishes 53 53 7 | | n/a contaminant(div) prok:g-proteobacteria 100 339 | seq_00331 1000 0,0,0,0,0,0,0 1000 | Pseudomonas aeruginosa 208964 prok:g-proteobacteria 1000 1000 224 | 2994495 prok:g-proteobacteria 1000 590 64 | | | n/a contaminant(div) prok:g-proteobacteria 100 340 | seq_00332 1000 0,0,0,0,0,0,0 1000 | Pseudomonas aeruginosa 208964 prok:g-proteobacteria 1000 1000 224 | 2994495 prok:g-proteobacteria 1000 1000 188 | | | n/a contaminant(div) prok:g-proteobacteria 100 341 | seq_00333 1000 0,0,0,0,0,0,0 1000 | Pseudomonas aeruginosa 208964 prok:g-proteobacteria 1000 1000 224 | 2994495 prok:g-proteobacteria 1000 1000 159 | 263067 prok:b-proteobacteria 1000 822 84 | 1119528 prok:b-proteobacteria 1000 796 83 | n/a contaminant(div) prok:g-proteobacteria 100 342 | seq_00334 1000 0,0,0,0,0,0,0 1000 | Pseudomonas aeruginosa 208964 prok:g-proteobacteria 1000 1000 224 | 2994495 prok:g-proteobacteria 1000 1000 170 | 263067 prok:b-proteobacteria 1000 1000 90 | 151784 prok:b-proteobacteria 1000 1000 84 | n/a contaminant(div) prok:g-proteobacteria 100 343 | seq_00335 1000 0,0,0,0,0,0,0 1000 | Pseudomonas aeruginosa 208964 prok:g-proteobacteria 1000 1000 224 | | | | n/a contaminant(div) prok:g-proteobacteria 100 344 | seq_00336 1000 0,0,0,0,0,0,0 1000 | Pseudomonas aeruginosa 208964 prok:g-proteobacteria 1000 1000 224 | 2994495 prok:g-proteobacteria 1000 991 169 | | | n/a contaminant(div) prok:g-proteobacteria 100 345 | seq_00337 1000 0,0,0,0,0,0,0 1000 | Pseudomonas aeruginosa 208964 prok:g-proteobacteria 1000 1000 224 | 2994495 prok:g-proteobacteria 1000 997 139 | | | n/a contaminant(div) prok:g-proteobacteria 100 346 | seq_00338 1000 0,0,0,0,0,0,0 1000 | Pseudomonas paraeruginosa 2994495 prok:g-proteobacteria 1000 1000 224 | 208964 prok:g-proteobacteria 1000 1000 224 | 2716335 prok:a-proteobacteria 846 846 57 | | n/a contaminant(div) prok:g-proteobacteria 100 347 | seq_00339 1000 0,0,0,0,0,0,0 1000 | Pseudomonas aeruginosa 208964 prok:g-proteobacteria 1000 1000 224 | 2994495 prok:g-proteobacteria 1000 999 223 | | | n/a contaminant(div) prok:g-proteobacteria 100 348 | seq_00340 1000 0,0,0,0,0,0,0 1000 | Pseudomonas aeruginosa 208964 prok:g-proteobacteria 1000 1000 224 | 1927959 prok:g-proteobacteria 1000 940 92 | 1777135 prok:b-proteobacteria 1000 975 91 | 380911 prok:b-proteobacteria 1000 933 87 | n/a contaminant(div) prok:g-proteobacteria 100 349 | seq_00341 1000 0,0,0,0,0,0,0 1000 | Pseudomonas paraeruginosa 2994495 prok:g-proteobacteria 1000 1000 224 | 208964 prok:g-proteobacteria 1000 1000 224 | 1067 prok:b-proteobacteria 1000 1000 93 | 1066 prok:b-proteobacteria 1000 999 91 | n/a contaminant(div) prok:g-proteobacteria 100 350 | seq_00342 1000 0,0,0,0,0,0,0 1000 | Pseudomonas aeruginosa 208964 prok:g-proteobacteria 1000 1000 224 | 2994495 prok:g-proteobacteria 1000 999 181 | | | n/a contaminant(div) prok:g-proteobacteria 100 351 | seq_00343 1000 0,0,0,0,0,0,0 1000 | Pseudomonas aeruginosa 208964 prok:g-proteobacteria 1000 1000 224 | 2994495 prok:g-proteobacteria 1000 1000 144 | | | n/a contaminant(div) prok:g-proteobacteria 100 352 | seq_00344 1000 0,0,0,0,0,0,0 1000 | Pseudomonas aeruginosa 208964 prok:g-proteobacteria 1000 1000 224 | 2994495 prok:g-proteobacteria 1000 1000 140 | | | n/a contaminant(div) prok:g-proteobacteria 100 353 | seq_00345 1000 0,0,0,0,0,0,0 1000 | Pseudomonas aeruginosa 208964 prok:g-proteobacteria 1000 1000 224 | | | | n/a contaminant(div) prok:g-proteobacteria 100 354 | seq_00346 1000 0,0,0,0,0,0,0 1000 | Pseudomonas aeruginosa 208964 prok:g-proteobacteria 1000 1000 224 | 2994495 prok:g-proteobacteria 1000 1000 184 | 2817027 prok:a-proteobacteria 969 835 82 | 544480 prok:a-proteobacteria 969 867 79 | n/a contaminant(div) prok:g-proteobacteria 100 355 | seq_00347 1000 0,0,0,0,0,0,0 1000 | Pseudomonas aeruginosa 208964 prok:g-proteobacteria 1000 1000 224 | 2762745 prok:g-proteobacteria 1000 1000 99 | 983920 prok:a-proteobacteria 1000 1000 62 | 1958945 prok:a-proteobacteria 1000 1000 59 | n/a contaminant(div) prok:g-proteobacteria 100 356 | seq_00348 1000 0,0,0,0,0,0,0 1000 | Pseudomonas aeruginosa 208964 prok:g-proteobacteria 1000 1000 224 | 2994495 prok:g-proteobacteria 1000 1000 210 | 1259197 prok:high GC Gram+ 774 774 74 | 51707 plnt:green algae 222 222 17 | n/a contaminant(div) prok:g-proteobacteria 100 357 | seq_00349 1000 0,0,0,0,0,0,0 1000 | Pseudomonas aeruginosa 208964 prok:g-proteobacteria 1000 1000 224 | 2994495 prok:g-proteobacteria 1000 983 201 | | | n/a contaminant(div) prok:g-proteobacteria 100 358 | seq_00350 1000 0,0,0,0,0,0,0 1000 | Pseudomonas paraeruginosa 2994495 prok:g-proteobacteria 1000 1000 224 | 208964 prok:g-proteobacteria 1000 1000 224 | | | n/a contaminant(div) prok:g-proteobacteria 100 359 | seq_00351 1000 0,0,0,0,0,0,0 1000 | Pseudomonas aeruginosa 208964 prok:g-proteobacteria 1000 1000 224 | 2994495 prok:g-proteobacteria 1000 1000 121 | | | n/a contaminant(div) prok:g-proteobacteria 100 360 | seq_00352 1000 0,0,0,0,0,0,0 1000 | Pseudomonas aeruginosa 208964 prok:g-proteobacteria 1000 1000 224 | 2994495 prok:g-proteobacteria 1000 1000 184 | 6706 anml:crustaceans 218 218 15 | | n/a contaminant(div) prok:g-proteobacteria 100 361 | seq_00353 1000 0,0,0,0,0,0,0 1000 | Pseudomonas aeruginosa 208964 prok:g-proteobacteria 1000 1000 224 | 2994495 prok:g-proteobacteria 1000 982 187 | | | n/a contaminant(div) prok:g-proteobacteria 100 362 | seq_00354 1000 0,0,0,0,0,0,0 1000 | Pseudomonas aeruginosa 208964 prok:g-proteobacteria 1000 1000 224 | 2994495 prok:g-proteobacteria 1000 997 156 | 2530387 prok:high GC Gram+ 896 862 44 | 418495 prok:high GC Gram+ 896 868 44 | n/a contaminant(div) prok:g-proteobacteria 100 363 | seq_00355 1000 0,0,0,0,0,0,0 1000 | Pseudomonas aeruginosa 208964 prok:g-proteobacteria 1000 1000 224 | 191390 prok:g-proteobacteria 1000 999 60 | 1246995 prok:high GC Gram+ 786 741 54 | 1854574 prok:high GC Gram+ 786 567 36 | n/a contaminant(div) prok:g-proteobacteria 100 364 | seq_00356 1000 0,0,0,0,0,0,0 1000 | Pseudomonas aeruginosa 208964 prok:g-proteobacteria 1000 1000 224 | 571190 prok:high GC Gram+ 998 972 90 | 103734 prok:high GC Gram+ 998 998 88 | 191390 prok:g-proteobacteria 1000 1000 73 | n/a contaminant(div) prok:g-proteobacteria 100 365 | seq_00357 1000 0,0,0,0,0,0,0 1000 | Pseudomonas aeruginosa 208964 prok:g-proteobacteria 1000 1000 224 | 2994495 prok:g-proteobacteria 1000 1000 214 | | | n/a contaminant(div) prok:g-proteobacteria 100 366 | seq_00358 1000 0,0,0,0,0,0,0 1000 | Pseudomonas aeruginosa 208964 prok:g-proteobacteria 1000 1000 224 | 2994495 prok:g-proteobacteria 1000 999 221 | 658167 prok:b-proteobacteria 1000 959 87 | 2045210 prok:b-proteobacteria 1000 931 77 | n/a contaminant(div) prok:g-proteobacteria 100 367 | seq_00359 1000 0,0,0,0,0,0,0 1000 | Pseudomonas aeruginosa 208964 prok:g-proteobacteria 1000 1000 224 | 2994495 prok:g-proteobacteria 1000 1000 224 | 2067960 prok:b-proteobacteria 987 987 93 | | n/a contaminant(div) prok:g-proteobacteria 100 368 | seq_00360 1000 0,0,0,0,0,0,0 1000 | Pseudomonas paraeruginosa 2994495 prok:g-proteobacteria 1000 1000 224 | 208964 prok:g-proteobacteria 1000 1000 224 | 2067960 prok:b-proteobacteria 999 966 70 | 2651334 prok:a-proteobacteria 871 871 60 | n/a contaminant(div) prok:g-proteobacteria 100 369 | seq_00361 1000 0,0,0,0,0,0,0 1000 | Pseudomonas aeruginosa 208964 prok:g-proteobacteria 1000 1000 224 | 2994495 prok:g-proteobacteria 1000 1000 108 | | | n/a contaminant(div) prok:g-proteobacteria 100 370 | seq_00362 1000 0,0,0,0,0,0,0 1000 | Pseudomonas aeruginosa 208964 prok:g-proteobacteria 1000 1000 224 | 2994495 prok:g-proteobacteria 1000 1000 174 | | | n/a contaminant(div) prok:g-proteobacteria 100 371 | seq_00363 1000 0,0,0,0,0,0,0 1000 | Pseudomonas aeruginosa 208964 prok:g-proteobacteria 1000 1000 224 | 2994495 prok:g-proteobacteria 1000 960 184 | 413882 prok:b-proteobacteria 512 446 45 | 2838466 prok:b-proteobacteria 512 482 39 | n/a contaminant(div) prok:g-proteobacteria 100 372 | seq_00364 1000 0,0,0,0,0,0,0 1000 | Pseudomonas aeruginosa 208964 prok:g-proteobacteria 1000 1000 224 | 2994495 prok:g-proteobacteria 1000 1000 189 | 455344 prok:high GC Gram+ 724 724 58 | | n/a contaminant(div) prok:g-proteobacteria 100 373 | seq_00365 1000 0,0,0,0,0,0,0 1000 | Pseudomonas aeruginosa 208964 prok:g-proteobacteria 1000 1000 224 | 745411 prok:g-proteobacteria 1000 982 70 | | | n/a contaminant(div) prok:g-proteobacteria 100 374 | seq_00366 1000 0,0,0,0,0,0,0 1000 | Pseudomonas aeruginosa 208964 prok:g-proteobacteria 1000 1000 224 | 198616 prok:g-proteobacteria 1000 619 72 | 6728 anml:crustaceans 22 22 4 | | n/a contaminant(div) prok:g-proteobacteria 100 375 | seq_00367 1000 0,0,0,0,0,0,0 1000 | Pseudomonas paraeruginosa 2994495 prok:g-proteobacteria 1000 1000 224 | 208964 prok:g-proteobacteria 1000 1000 224 | 1981325 prok:b-proteobacteria 1000 824 80 | 158899 prok:b-proteobacteria 1000 994 79 | n/a contaminant(div) prok:g-proteobacteria 100 376 | seq_00368 1000 0,0,0,0,0,0,0 1000 | Pseudomonas aeruginosa 208964 prok:g-proteobacteria 1000 1000 224 | 2994495 prok:g-proteobacteria 1000 1000 215 | 215580 prok:b-proteobacteria 802 802 81 | | n/a contaminant(div) prok:g-proteobacteria 100 377 | seq_00369 1000 0,0,0,0,0,0,0 1000 | Pseudomonas aeruginosa 208964 prok:g-proteobacteria 1000 1000 224 | 2994495 prok:g-proteobacteria 1000 969 158 | | | n/a contaminant(div) prok:g-proteobacteria 100 378 | seq_00370 1000 0,0,0,0,0,0,0 1000 | Pseudomonas paraeruginosa 2994495 prok:g-proteobacteria 1000 1000 224 | 208964 prok:g-proteobacteria 1000 1000 224 | 47775 plnt:green algae 92 92 10 | | n/a contaminant(div) prok:g-proteobacteria 100 379 | seq_00371 1000 0,0,0,0,0,0,0 1000 | Pseudomonas paraeruginosa 2994495 prok:g-proteobacteria 1000 1000 224 | 208964 prok:g-proteobacteria 1000 1000 224 | | | n/a contaminant(div) prok:g-proteobacteria 100 380 | seq_00372 1000 0,0,0,0,0,0,0 1000 | Pseudomonas aeruginosa 208964 prok:g-proteobacteria 1000 1000 224 | 2994495 prok:g-proteobacteria 1000 992 146 | | | n/a contaminant(div) prok:g-proteobacteria 100 381 | seq_00373 1000 0,0,0,0,0,0,0 1000 | Pseudomonas paraeruginosa 2994495 prok:g-proteobacteria 1000 1000 224 | 208964 prok:g-proteobacteria 1000 1000 224 | 1287735 prok:b-proteobacteria 720 720 60 | 72557 prok:b-proteobacteria 720 636 55 | n/a contaminant(div) prok:g-proteobacteria 100 382 | seq_00374 1000 0,0,0,0,0,0,0 1000 | Pseudomonas aeruginosa 208964 prok:g-proteobacteria 1000 1000 224 | 2994495 prok:g-proteobacteria 1000 1000 186 | 1234382 prok:b-proteobacteria 986 461 70 | 519081 prok:b-proteobacteria 986 932 69 | n/a contaminant(div) prok:g-proteobacteria 100 383 | seq_00375 1000 0,0,0,0,0,0,0 1000 | Pseudomonas aeruginosa 208964 prok:g-proteobacteria 1000 1000 224 | 2994495 prok:g-proteobacteria 1000 1000 224 | 1735038 prok:b-proteobacteria 999 969 98 | 1682490 prok:b-proteobacteria 999 969 96 | n/a contaminant(div) prok:g-proteobacteria 100 384 | seq_00376 1000 0,0,0,0,0,0,0 1000 | Pseudomonas aeruginosa 208964 prok:g-proteobacteria 1000 1000 224 | 2994495 prok:g-proteobacteria 1000 1000 224 | | | n/a contaminant(div) prok:g-proteobacteria 100 385 | seq_00377 1000 0,0,0,0,0,0,0 1000 | Pseudomonas aeruginosa 208964 prok:g-proteobacteria 1000 1000 224 | 2994495 prok:g-proteobacteria 1000 1000 224 | 2809013 prst:algae 46 46 8 | | n/a contaminant(div) prok:g-proteobacteria 100 386 | seq_00378 1000 0,0,0,0,0,0,0 1000 | Pseudomonas aeruginosa 208964 prok:g-proteobacteria 1000 1000 224 | 2994495 prok:g-proteobacteria 1000 1000 186 | 2654982 prok:b-proteobacteria 763 709 54 | 2015348 prok:b-proteobacteria 763 742 53 | n/a contaminant(div) prok:g-proteobacteria 100 387 | seq_00379 1000 0,0,0,0,0,0,0 1000 | Pseudomonas aeruginosa 208964 prok:g-proteobacteria 1000 1000 224 | 2994495 prok:g-proteobacteria 1000 999 223 | 151654 prok:b-proteobacteria 1000 981 88 | 2666307 prok:b-proteobacteria 1000 999 87 | n/a contaminant(div) prok:g-proteobacteria 100 388 | seq_00380 1000 0,0,0,0,0,0,0 1000 | Pseudomonas aeruginosa 208964 prok:g-proteobacteria 1000 1000 224 | 2994495 prok:g-proteobacteria 1000 983 199 | | | n/a contaminant(div) prok:g-proteobacteria 100 389 | seq_00381 1000 0,0,0,0,0,0,0 1000 | Pseudomonas aeruginosa 208964 prok:g-proteobacteria 1000 1000 224 | 2994495 prok:g-proteobacteria 1000 872 144 | 1121280 prok:b-proteobacteria 498 239 63 | 755170 prok:b-proteobacteria 498 251 60 | n/a contaminant(div) prok:g-proteobacteria 100 390 | seq_00382 1000 0,0,0,0,0,0,0 1000 | Pseudomonas aeruginosa 208964 prok:g-proteobacteria 1000 1000 224 | 2994495 prok:g-proteobacteria 1000 1000 206 | | | n/a contaminant(div) prok:g-proteobacteria 100 391 | seq_00383 1000 0,0,0,0,0,0,0 1000 | Pseudomonas aeruginosa 208964 prok:g-proteobacteria 1000 1000 224 | 2994495 prok:g-proteobacteria 1000 1000 195 | | | n/a contaminant(div) prok:g-proteobacteria 100 392 | seq_00384 1000 0,0,0,0,0,0,0 1000 | Pseudomonas aeruginosa 208964 prok:g-proteobacteria 1000 1000 224 | 2994495 prok:g-proteobacteria 1000 1000 219 | 2051553 prok:a-proteobacteria 396 393 52 | 314231 prok:a-proteobacteria 396 386 50 | n/a contaminant(div) prok:g-proteobacteria 100 393 | seq_00385 1000 0,0,0,0,0,0,0 1000 | Pseudomonas aeruginosa 208964 prok:g-proteobacteria 1000 1000 224 | 2994495 prok:g-proteobacteria 1000 995 102 | | | n/a contaminant(div) prok:g-proteobacteria 100 394 | seq_00386 1000 0,0,0,0,0,0,0 1000 | Pseudomonas aeruginosa 208964 prok:g-proteobacteria 1000 1000 224 | 4097 plnt:plants 157 157 13 | | | n/a contaminant(div) prok:g-proteobacteria 100 395 | seq_00387 1000 0,0,0,0,0,0,0 1000 | Pseudomonas aeruginosa 208964 prok:g-proteobacteria 1000 1000 224 | 2994495 prok:g-proteobacteria 1000 1000 113 | | | n/a contaminant(div) prok:g-proteobacteria 100 396 | seq_00388 1000 0,0,0,0,0,0,0 1000 | Pseudomonas aeruginosa 208964 prok:g-proteobacteria 1000 1000 224 | 2994495 prok:g-proteobacteria 1000 999 149 | | | n/a contaminant(div) prok:g-proteobacteria 100 397 | seq_00389 1000 0,0,0,0,0,0,0 1000 | Pseudomonas aeruginosa 208964 prok:g-proteobacteria 1000 1000 224 | 366289 prok:g-proteobacteria 1000 1000 118 | 2707176 prok:b-proteobacteria 977 943 95 | 1218075 prok:b-proteobacteria 977 956 79 | n/a contaminant(div) prok:g-proteobacteria 100 398 | seq_00390 1000 0,0,0,0,0,0,0 1000 | Pseudomonas aeruginosa 208964 prok:g-proteobacteria 1000 1000 224 | 2994495 prok:g-proteobacteria 1000 1000 224 | 1527607 prok:b-proteobacteria 518 506 73 | 1929293 prok:b-proteobacteria 518 488 67 | n/a contaminant(div) prok:g-proteobacteria 100 399 | seq_00391 1000 0,0,0,0,0,0,0 1000 | Pseudomonas aeruginosa 208964 prok:g-proteobacteria 1000 1000 224 | 2994495 prok:g-proteobacteria 1000 1000 101 | | | n/a contaminant(div) prok:g-proteobacteria 100 400 | seq_00392 1000 0,0,0,0,0,0,0 1000 | Pseudomonas paraeruginosa 2994495 prok:g-proteobacteria 1000 1000 224 | 208964 prok:g-proteobacteria 1000 1000 224 | 1335062 prok:a-proteobacteria 1000 1000 223 | 626343 prok:CFB group bacteria 913 910 188 | n/a contaminant(div) prok:g-proteobacteria 100 401 | seq_00393 1000 0,0,0,0,0,0,0 1000 | Pseudomonas aeruginosa 208964 prok:g-proteobacteria 1000 1000 224 | 2994495 prok:g-proteobacteria 1000 999 158 | 90060 prok:b-proteobacteria 658 578 59 | 2590212 prok:b-proteobacteria 658 658 55 | n/a contaminant(div) prok:g-proteobacteria 100 402 | seq_00394 1000 0,0,0,0,0,0,0 1000 | Pseudomonas aeruginosa 208964 prok:g-proteobacteria 1000 1000 224 | 2994495 prok:g-proteobacteria 1000 1000 161 | | | n/a contaminant(div) prok:g-proteobacteria 100 403 | seq_00395 1000 0,0,0,0,0,0,0 1000 | Pseudomonas aeruginosa 208964 prok:g-proteobacteria 1000 1000 224 | 2994495 prok:g-proteobacteria 1000 1000 165 | | | n/a contaminant(div) prok:g-proteobacteria 100 404 | seq_00396 1000 0,0,0,0,0,0,0 1000 | Pseudomonas aeruginosa 208964 prok:g-proteobacteria 1000 1000 224 | 2994495 prok:g-proteobacteria 1000 953 196 | 1637837 prok:b-proteobacteria 827 813 70 | 430531 prok:b-proteobacteria 827 827 67 | n/a contaminant(div) prok:g-proteobacteria 100 405 | seq_00397 1000 0,0,0,0,0,0,0 1000 | Pseudomonas paraeruginosa 2994495 prok:g-proteobacteria 1000 1000 224 | 208964 prok:g-proteobacteria 1000 1000 224 | | | n/a contaminant(div) prok:g-proteobacteria 100 406 | seq_00398 1000 0,0,0,0,0,0,0 1000 | Pseudomonas aeruginosa 208964 prok:g-proteobacteria 1000 1000 224 | 2994495 prok:g-proteobacteria 1000 1000 143 | 2030825 prok:a-proteobacteria 467 467 45 | | n/a contaminant(div) prok:g-proteobacteria 100 407 | seq_00399 1000 0,0,0,0,0,0,0 1000 | Pseudomonas aeruginosa 208964 prok:g-proteobacteria 1000 1000 224 | 2994495 prok:g-proteobacteria 1000 1000 162 | | | n/a contaminant(div) prok:g-proteobacteria 100 408 | seq_00400 1000 0,0,0,0,0,0,0 1000 | Pseudomonas aeruginosa 208964 prok:g-proteobacteria 1000 1000 224 | 2994495 prok:g-proteobacteria 1000 1000 169 | | | n/a contaminant(div) prok:g-proteobacteria 100 409 | seq_00401 1000 0,0,0,0,0,0,0 1000 | Pseudomonas paraeruginosa 2994495 prok:g-proteobacteria 1000 1000 224 | 208964 prok:g-proteobacteria 1000 1000 224 | 1349752 prok:b-proteobacteria 988 423 102 | 536 prok:b-proteobacteria 988 981 96 | n/a contaminant(div) prok:g-proteobacteria 100 410 | seq_00402 1000 0,0,0,0,0,0,0 1000 | Pseudomonas aeruginosa 208964 prok:g-proteobacteria 1000 1000 224 | 2994495 prok:g-proteobacteria 1000 998 170 | | | n/a contaminant(div) prok:g-proteobacteria 100 411 | seq_00403 1000 0,0,0,0,0,0,0 1000 | Pseudomonas aeruginosa 208964 prok:g-proteobacteria 1000 1000 224 | 2994495 prok:g-proteobacteria 1000 1000 172 | | | n/a contaminant(div) prok:g-proteobacteria 100 412 | seq_00404 1000 0,0,0,0,0,0,0 1000 | Pseudomonas aeruginosa 208964 prok:g-proteobacteria 1000 1000 224 | 2994495 prok:g-proteobacteria 1000 1000 154 | 2480090 prok:b-proteobacteria 552 552 49 | | n/a contaminant(div) prok:g-proteobacteria 100 413 | seq_00405 1000 0,0,0,0,0,0,0 1000 | Pseudomonas aeruginosa 208964 prok:g-proteobacteria 1000 1000 224 | 2994495 prok:g-proteobacteria 1000 994 197 | 1121029 prok:b-proteobacteria 891 891 52 | 8364 anml:amphibians 229 229 15 | n/a contaminant(div) prok:g-proteobacteria 100 414 | seq_00406 1000 0,0,0,0,0,0,0 1000 | Pseudomonas aeruginosa 208964 prok:g-proteobacteria 1000 1000 224 | 2994495 prok:g-proteobacteria 1000 1000 224 | | | n/a contaminant(div) prok:g-proteobacteria 100 415 | seq_00407 1000 0,0,0,0,0,0,0 1000 | Pseudomonas aeruginosa 208964 prok:g-proteobacteria 1000 1000 224 | 2994495 prok:g-proteobacteria 1000 1000 217 | | | n/a contaminant(div) prok:g-proteobacteria 100 416 | seq_00408 1000 0,0,0,0,0,0,0 1000 | Pseudomonas aeruginosa 208964 prok:g-proteobacteria 1000 1000 224 | 2994495 prok:g-proteobacteria 1000 999 165 | 2014887 prok:b-proteobacteria 941 763 71 | 1940612 prok:b-proteobacteria 941 917 63 | n/a contaminant(div) prok:g-proteobacteria 100 417 | seq_00409 1000 0,0,0,0,0,0,0 1000 | Pseudomonas aeruginosa 208964 prok:g-proteobacteria 1000 1000 224 | 2994495 prok:g-proteobacteria 1000 1000 188 | | | n/a contaminant(div) prok:g-proteobacteria 100 418 | seq_00410 1000 0,0,0,0,0,0,0 1000 | Pseudomonas aeruginosa 208964 prok:g-proteobacteria 1000 1000 224 | 2994495 prok:g-proteobacteria 1000 999 142 | | | n/a contaminant(div) prok:g-proteobacteria 100 419 | seq_00411 1000 0,0,0,0,0,0,0 1000 | Pseudomonas aeruginosa 208964 prok:g-proteobacteria 1000 1000 224 | 2994495 prok:g-proteobacteria 1000 999 166 | | | n/a contaminant(div) prok:g-proteobacteria 100 420 | seq_00412 1000 0,0,0,0,0,0,0 1000 | Pseudomonas aeruginosa 208964 prok:g-proteobacteria 1000 1000 224 | 2994495 prok:g-proteobacteria 1000 1000 144 | 8502 anml:reptiles 153 153 12 | | n/a contaminant(div) prok:g-proteobacteria 100 421 | seq_00413 1000 0,0,0,0,0,0,0 1000 | Pseudomonas aeruginosa 208964 prok:g-proteobacteria 1000 1000 224 | 2994495 prok:g-proteobacteria 1000 997 216 | | | n/a contaminant(div) prok:g-proteobacteria 100 422 | seq_00414 1000 0,0,0,0,0,0,0 1000 | Pseudomonas aeruginosa 208964 prok:g-proteobacteria 1000 1000 224 | 2994495 prok:g-proteobacteria 1000 1000 209 | | | n/a contaminant(div) prok:g-proteobacteria 100 423 | seq_00415 1000 0,0,0,0,0,0,0 1000 | Pseudomonas aeruginosa 208964 prok:g-proteobacteria 1000 1000 224 | 2994495 prok:g-proteobacteria 1000 1000 181 | 2696335 anml:nematodes 225 225 15 | | n/a contaminant(div) prok:g-proteobacteria 100 424 | seq_00416 1000 0,0,0,0,0,0,0 1000 | Pseudomonas aeruginosa 208964 prok:g-proteobacteria 1000 1000 224 | 2994495 prok:g-proteobacteria 1000 1000 224 | 1306953 prok:a-proteobacteria 406 406 31 | 416944 prok:b-proteobacteria 321 321 30 | n/a contaminant(div) prok:g-proteobacteria 100 425 | seq_00417 1000 0,0,0,0,0,0,0 1000 | Pseudomonas aeruginosa 208964 prok:g-proteobacteria 1000 1000 224 | 2994495 prok:g-proteobacteria 1000 967 210 | 463025 prok:b-proteobacteria 893 807 79 | 2014887 prok:b-proteobacteria 893 759 73 | n/a contaminant(div) prok:g-proteobacteria 100 426 | seq_00418 1000 0,0,0,0,0,0,0 1000 | Pseudomonas aeruginosa 208964 prok:g-proteobacteria 1000 1000 224 | 2994495 prok:g-proteobacteria 1000 1000 224 | | | n/a contaminant(div) prok:g-proteobacteria 100 427 | 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