├── .coverage ├── .gitignore ├── .readthedocs.yaml ├── CONTRIBUTING.md ├── LICENSE ├── MANIFEST.in ├── README.rst ├── conn2res ├── __init__.py ├── _version.py ├── connectivity.py ├── performance.py ├── plotting.py ├── readout.py ├── reservoir.py ├── tasks.py ├── tests │ ├── .coverage │ ├── install_test.py │ ├── test_connectivity.py │ ├── test_reservoir.py │ └── test_tasks.py └── utils.py ├── docs ├── Makefile ├── make.bat ├── requirements.txt └── source │ ├── _static │ ├── conn2res_logo.png │ └── theme_overrides.css │ ├── _templates │ ├── class.rst │ └── function.rst │ ├── api.rst │ ├── citing.rst │ ├── conf.py │ ├── contributing.rst │ ├── images │ ├── conn2res.png │ └── rc.png │ ├── index.rst │ ├── installation.rst │ ├── usage.rst │ └── user_guide │ └── main_workflow.rst ├── examples ├── README.rst ├── example1_figs.py ├── example1_sims.py ├── example2_figs.py ├── example2_sims.py ├── example3_figs.py ├── example3_sims.py ├── example4_sims.py ├── tutorial.ipynb └── tutorial.py ├── images ├── conn2res.png ├── conn2res_logo.png └── rc.png ├── pyproject.toml ├── requirements.txt ├── setup.cfg ├── setup.py └── versioneer.py /.coverage: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/netneurolab/conn2res/HEAD/.coverage -------------------------------------------------------------------------------- /.gitignore: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/netneurolab/conn2res/HEAD/.gitignore -------------------------------------------------------------------------------- /.readthedocs.yaml: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/netneurolab/conn2res/HEAD/.readthedocs.yaml -------------------------------------------------------------------------------- /CONTRIBUTING.md: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/netneurolab/conn2res/HEAD/CONTRIBUTING.md -------------------------------------------------------------------------------- /LICENSE: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/netneurolab/conn2res/HEAD/LICENSE -------------------------------------------------------------------------------- /MANIFEST.in: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/netneurolab/conn2res/HEAD/MANIFEST.in -------------------------------------------------------------------------------- /README.rst: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/netneurolab/conn2res/HEAD/README.rst -------------------------------------------------------------------------------- /conn2res/__init__.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/netneurolab/conn2res/HEAD/conn2res/__init__.py -------------------------------------------------------------------------------- /conn2res/_version.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/netneurolab/conn2res/HEAD/conn2res/_version.py -------------------------------------------------------------------------------- /conn2res/connectivity.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/netneurolab/conn2res/HEAD/conn2res/connectivity.py -------------------------------------------------------------------------------- /conn2res/performance.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/netneurolab/conn2res/HEAD/conn2res/performance.py -------------------------------------------------------------------------------- /conn2res/plotting.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/netneurolab/conn2res/HEAD/conn2res/plotting.py -------------------------------------------------------------------------------- /conn2res/readout.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/netneurolab/conn2res/HEAD/conn2res/readout.py -------------------------------------------------------------------------------- /conn2res/reservoir.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/netneurolab/conn2res/HEAD/conn2res/reservoir.py -------------------------------------------------------------------------------- /conn2res/tasks.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/netneurolab/conn2res/HEAD/conn2res/tasks.py -------------------------------------------------------------------------------- /conn2res/tests/.coverage: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/netneurolab/conn2res/HEAD/conn2res/tests/.coverage -------------------------------------------------------------------------------- /conn2res/tests/install_test.py: -------------------------------------------------------------------------------- 1 | import conn2res -------------------------------------------------------------------------------- /conn2res/tests/test_connectivity.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/netneurolab/conn2res/HEAD/conn2res/tests/test_connectivity.py -------------------------------------------------------------------------------- /conn2res/tests/test_reservoir.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/netneurolab/conn2res/HEAD/conn2res/tests/test_reservoir.py -------------------------------------------------------------------------------- /conn2res/tests/test_tasks.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/netneurolab/conn2res/HEAD/conn2res/tests/test_tasks.py -------------------------------------------------------------------------------- /conn2res/utils.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/netneurolab/conn2res/HEAD/conn2res/utils.py -------------------------------------------------------------------------------- /docs/Makefile: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/netneurolab/conn2res/HEAD/docs/Makefile -------------------------------------------------------------------------------- /docs/make.bat: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/netneurolab/conn2res/HEAD/docs/make.bat -------------------------------------------------------------------------------- /docs/requirements.txt: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/netneurolab/conn2res/HEAD/docs/requirements.txt -------------------------------------------------------------------------------- /docs/source/_static/conn2res_logo.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/netneurolab/conn2res/HEAD/docs/source/_static/conn2res_logo.png -------------------------------------------------------------------------------- /docs/source/_static/theme_overrides.css: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/netneurolab/conn2res/HEAD/docs/source/_static/theme_overrides.css -------------------------------------------------------------------------------- /docs/source/_templates/class.rst: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/netneurolab/conn2res/HEAD/docs/source/_templates/class.rst -------------------------------------------------------------------------------- /docs/source/_templates/function.rst: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/netneurolab/conn2res/HEAD/docs/source/_templates/function.rst -------------------------------------------------------------------------------- /docs/source/api.rst: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/netneurolab/conn2res/HEAD/docs/source/api.rst -------------------------------------------------------------------------------- /docs/source/citing.rst: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/netneurolab/conn2res/HEAD/docs/source/citing.rst -------------------------------------------------------------------------------- /docs/source/conf.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/netneurolab/conn2res/HEAD/docs/source/conf.py -------------------------------------------------------------------------------- /docs/source/contributing.rst: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/netneurolab/conn2res/HEAD/docs/source/contributing.rst -------------------------------------------------------------------------------- /docs/source/images/conn2res.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/netneurolab/conn2res/HEAD/docs/source/images/conn2res.png -------------------------------------------------------------------------------- /docs/source/images/rc.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/netneurolab/conn2res/HEAD/docs/source/images/rc.png -------------------------------------------------------------------------------- /docs/source/index.rst: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/netneurolab/conn2res/HEAD/docs/source/index.rst -------------------------------------------------------------------------------- /docs/source/installation.rst: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/netneurolab/conn2res/HEAD/docs/source/installation.rst -------------------------------------------------------------------------------- /docs/source/usage.rst: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/netneurolab/conn2res/HEAD/docs/source/usage.rst -------------------------------------------------------------------------------- /docs/source/user_guide/main_workflow.rst: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/netneurolab/conn2res/HEAD/docs/source/user_guide/main_workflow.rst -------------------------------------------------------------------------------- /examples/README.rst: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/netneurolab/conn2res/HEAD/examples/README.rst -------------------------------------------------------------------------------- /examples/example1_figs.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/netneurolab/conn2res/HEAD/examples/example1_figs.py -------------------------------------------------------------------------------- /examples/example1_sims.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/netneurolab/conn2res/HEAD/examples/example1_sims.py -------------------------------------------------------------------------------- /examples/example2_figs.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/netneurolab/conn2res/HEAD/examples/example2_figs.py -------------------------------------------------------------------------------- /examples/example2_sims.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/netneurolab/conn2res/HEAD/examples/example2_sims.py -------------------------------------------------------------------------------- /examples/example3_figs.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/netneurolab/conn2res/HEAD/examples/example3_figs.py -------------------------------------------------------------------------------- /examples/example3_sims.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/netneurolab/conn2res/HEAD/examples/example3_sims.py -------------------------------------------------------------------------------- /examples/example4_sims.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/netneurolab/conn2res/HEAD/examples/example4_sims.py -------------------------------------------------------------------------------- /examples/tutorial.ipynb: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/netneurolab/conn2res/HEAD/examples/tutorial.ipynb -------------------------------------------------------------------------------- /examples/tutorial.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/netneurolab/conn2res/HEAD/examples/tutorial.py -------------------------------------------------------------------------------- /images/conn2res.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/netneurolab/conn2res/HEAD/images/conn2res.png -------------------------------------------------------------------------------- /images/conn2res_logo.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/netneurolab/conn2res/HEAD/images/conn2res_logo.png -------------------------------------------------------------------------------- /images/rc.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/netneurolab/conn2res/HEAD/images/rc.png -------------------------------------------------------------------------------- /pyproject.toml: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/netneurolab/conn2res/HEAD/pyproject.toml -------------------------------------------------------------------------------- /requirements.txt: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/netneurolab/conn2res/HEAD/requirements.txt -------------------------------------------------------------------------------- /setup.cfg: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/netneurolab/conn2res/HEAD/setup.cfg -------------------------------------------------------------------------------- /setup.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/netneurolab/conn2res/HEAD/setup.py -------------------------------------------------------------------------------- /versioneer.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/netneurolab/conn2res/HEAD/versioneer.py --------------------------------------------------------------------------------