├── .gitattributes ├── .github ├── ISSUE_TEMPLATE │ ├── bug-report.yml │ └── feature-request.yml └── workflows │ ├── docker-release.yml │ ├── docs.yml │ ├── tests-basic.yml │ ├── tests-datasets-fetcher.yml │ └── tests-plotting-pyvista.yml ├── .gitignore ├── .readthedocs.yaml ├── Dockerfile ├── LICENSE ├── MANIFEST.in ├── README.rst ├── docs ├── Makefile ├── _static │ └── theme_overrides.css ├── _templates │ ├── class.rst │ └── function.rst ├── api.rst ├── conf.py ├── index.rst ├── installation.rst └── requirements.txt ├── examples ├── README.txt ├── plot_consensus_clustering.py ├── plot_perm_pvals.py ├── wip_plot_mirchi_2018.py └── wip_plot_spin.py ├── netneurotools ├── __init__.py ├── _version.py ├── datasets │ ├── __init__.py │ ├── _mirchi2018.py │ ├── datasets.json │ ├── datasets_utils.py │ ├── fetch_atlas.py │ ├── fetch_project.py │ ├── fetch_template.py │ ├── netneurotools.bib │ ├── references.json │ └── tests │ │ ├── __init__.py │ │ ├── test_datasets_utils.py │ │ └── test_fetch.py ├── experimental │ └── __init__.py ├── interface │ ├── __init__.py │ ├── cifti.py │ ├── freesurfer.py │ ├── gifti.py │ ├── interface_utils.py │ ├── surf_parc.py │ └── tests │ │ ├── __init__.py │ │ ├── test_freesurfer.py │ │ └── test_transforms.py ├── metrics │ ├── __init__.py │ ├── bct.py │ ├── communication.py │ ├── control.py │ ├── metrics_utils.py │ ├── spreading.py │ ├── statistical.py │ └── tests │ │ ├── __init__.py │ │ ├── test_bct.py │ │ ├── test_communication.py │ │ ├── test_control.py │ │ ├── test_spreading.py │ │ └── test_statistical.py ├── modularity │ ├── __init__.py │ ├── modules.py │ └── tests │ │ ├── __init__.py │ │ └── test_modules.py ├── networks │ ├── __init__.py │ ├── consensus.py │ ├── generative.py │ ├── networks_utils.py │ ├── randomize.py │ └── tests │ │ ├── __init__.py │ │ ├── test_consensus.py │ │ ├── test_generative.py │ │ ├── test_networks_utils.py │ │ └── test_randomize.py ├── plotting │ ├── __init__.py │ ├── color_utils.py │ ├── mpl_plotters.py │ ├── pysurfer_plotters.py │ ├── pyvista_plotters.py │ └── tests │ │ ├── __init__.py │ │ ├── test_color_utils.py │ │ ├── test_mpl.py │ │ ├── test_pysurfer.py │ │ └── test_pyvista.py ├── spatial │ ├── __init__.py │ ├── gaussian_random_field.py │ ├── spatial_stats.py │ └── tests │ │ ├── __init__.py │ │ ├── test_grf.py │ │ └── test_spatialstats.py └── stats │ ├── __init__.py │ ├── correlation.py │ ├── permutation_test.py │ ├── regression.py │ ├── stats_utils.py │ └── tests │ ├── __init__.py │ ├── test_correlation.py │ ├── test_permutation.py │ └── test_regression.py ├── pyproject.toml ├── requirements.txt ├── resources └── generate_atl-cammoun2012_surface.py ├── setup.py ├── tools ├── install_dependencies.sh ├── install_package.sh └── run_checks.sh └── versioneer.py /.gitattributes: -------------------------------------------------------------------------------- 1 | netneurotools/_version.py export-subst 2 | 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