├── .gitignore ├── @neuroelf ├── display.m ├── fieldnames.m ├── neuroelf.m ├── private │ ├── ac2vmp.m │ ├── acpc2tal.m │ ├── acqio.m │ ├── acsvread.m │ ├── afni_parse.m │ ├── alphasim.m │ ├── analyze_setendian.m │ ├── analyzerkfile.m │ ├── analyzeto4dnii.m │ ├── analyzetype.m │ ├── applybvtrf.m │ ├── applyfdr.m │ ├── applyspmsnc.c │ ├── applyspmsnc.m │ ├── applyspmsnc.mexa64 │ ├── applyspmsnc.mexglx │ ├── applyspmsnc.mexmaca64 │ ├── applyspmsnc.mexmaci │ ├── applyspmsnc.mexmaci64 │ ├── applyspmsnc.mexw32 │ ├── applyspmsnc.mexw64 │ ├── arlagsk.m │ ├── asciiread.m │ ├── asciitab.m │ ├── asciiwrite.m │ ├── auroc.m │ ├── autocorr.m │ ├── averagepmps.m │ ├── averagestruct.m │ ├── averagevmrs.m │ ├── barycoord.m │ ├── bboverlay.m │ ├── bbubble.m │ ├── bcc2area.m │ ├── bffdocu.m │ ├── bffio.m │ ├── bffparse.m │ ├── binread.m │ ├── binwrite.m │ ├── bitdump.m │ ├── bssample.m │ ├── bstrapbca.m │ ├── bstrappct.m │ ├── bstrapz.m │ ├── btc_coordc.m │ ├── btc_meshcn.m │ ├── btc_meshcolor.m │ ├── btc_meshtrf.m │ ├── butterworth.m │ ├── bvcoordconv.m │ ├── bvtrf.m │ ├── bvxaddvartofile.m │ ├── bvxcreatefile.m │ ├── calcbetas.m │ ├── camelcase.m │ ├── catstruct.m │ ├── cellipse.m │ ├── checkstruct.m │ ├── checksyntax.m │ ├── clustercoords.m │ ├── clustercoordsc.c │ ├── clustercoordsc.m │ ├── clustercoordsc.mexa64 │ ├── clustercoordsc.mexglx │ ├── clustercoordsc.mexmaca64 │ ├── clustercoordsc.mexmaci │ ├── clustercoordsc.mexmaci64 │ ├── clustercoordsc.mexw32 │ ├── clustercoordsc.mexw64 │ ├── clusterdist.m │ ├── clustermeshmap.m │ ├── clustermeshmapbin.m │ ├── clustervol.m │ ├── clustervol_struct.m │ ├── cohenskappa.m │ ├── colcode2uint32.m │ ├── colorpicker.m │ ├── combine3danalyze.m │ ├── combineffxglms.m │ ├── computehrv.m │ ├── computescalingwindow.m │ ├── condsum.c │ ├── condsum.m │ ├── condsum.mexa64 │ ├── condsum.mexglx │ ├── condsum.mexmaca64 │ ├── condsum.mexmaci │ ├── condsum.mexmaci64 │ ├── condsum.mexw32 │ ├── condsum.mexw64 │ ├── conjval.m │ ├── conjvalp.m │ ├── conv3d.c │ ├── conv3d.h │ ├── conv3d.m │ ├── conv3d.mexa64 │ ├── conv3d.mexglx │ ├── conv3d.mexmaca64 │ ├── conv3d.mexmaci │ ├── conv3d.mexmaci64 │ ├── conv3d.mexw32 │ ├── conv3d.mexw64 │ ├── convones.m │ ├── correlinvtstat.m │ ├── correlpvalue.m │ ├── correltstat.m │ ├── corrmap.m │ ├── cov_nd.c │ ├── cov_nd.m │ ├── cov_nd.mexa64 │ ├── cov_nd.mexglx │ ├── cov_nd.mexmaca64 │ ├── cov_nd.mexmaci │ ├── cov_nd.mexmaci64 │ ├── cov_nd.mexw32 │ ├── cov_nd.mexw64 │ ├── cpfile.m │ ├── crawford_abnorm.m │ ├── crawford_diff.m │ ├── crawford_diss.m │ ├── createfmr.m │ ├── createfontmat.m │ ├── createmarkervmp.m │ ├── createprtsfromeprime.m │ ├── createsrf.m │ ├── createvmr.m │ ├── csvdbupdate.m │ ├── cutnpastemovie.m │ ├── cv_addtolist.m │ ├── cv_removefromlist.m │ ├── cv_slicevar.m │ ├── cv_statsvar.m │ ├── cv_varlist.m │ ├── dcm2nii.m │ ├── dcmio.m │ ├── ddeblank.m │ ├── degclust.m │ ├── depcorrt.m │ ├── detecthandles.m │ ├── detecthandles_o.m │ ├── dicom2nii.m │ ├── dicom4todmr.m │ ├── dicom4tofmr.m │ ├── dicom_dic.m │ ├── dicom_vr.m │ ├── dilate3d.m │ ├── dispp.m │ ├── dispslice.m │ ├── dispslicemovie.m │ ├── dispstruct.m │ ├── disttrans.m │ ├── dividetrimesh.m │ ├── dtitrackfibers.m │ ├── dwitensorcalc.m │ ├── emptysrf.m │ ├── emptystruct.m │ ├── erode3d.m │ ├── exceltocoords.m │ ├── extractfromvtcs.m │ ├── fdr_thresholds.m │ ├── fendian.m │ ├── fieldsize.m │ ├── fifio.m │ ├── fileguessendian.m │ ├── filesize.m │ ├── fileswapendian.m │ ├── filtwin.m │ ├── findfiledir.m │ ├── findfiles.m │ ├── findfirst.c │ ├── findfirst.m │ ├── findfirst.mexa64 │ ├── findfirst.mexglx │ ├── findfirst.mexmaca64 │ ├── findfirst.mexmaci │ ├── findfirst.mexmaci64 │ ├── findfirst.mexw32 │ ├── findfirst.mexw64 │ ├── fisherr2z.m │ ├── fitrobustbisquare.m │ ├── fitrobustbisquare_img.m │ ├── fitrobustbisquare_img_full.m │ ├── fitrobustbisquare_multi.m │ ├── fitrobustlog.m │ ├── fitrobustlog_img.m │ ├── flexinterpn.c │ ├── flexinterpn.m │ ├── flexinterpn.mexa64 │ ├── flexinterpn.mexglx │ ├── flexinterpn.mexmaca64 │ ├── flexinterpn.mexmaci │ ├── flexinterpn.mexmaci64 │ ├── flexinterpn.mexw32 │ ├── flexinterpn.mexw64 │ ├── flexinterpn_demo.m │ ├── flexinterpn_method.m │ ├── flexinterpnw.m │ ├── flexinterpnw_method.m │ ├── flexmask.c │ ├── flexmask.h │ ├── flexmask.m │ ├── flexmask.mexa64 │ ├── flexmask.mexglx │ ├── flexmask.mexmaca64 │ ├── flexmask.mexmaci │ ├── flexmask.mexmaci64 │ ├── flexmask.mexw32 │ ├── flexmask.mexw64 │ ├── floodfill3.m │ ├── floodfill3c.c │ ├── floodfill3c.m │ ├── floodfill3c.mexa64 │ ├── floodfill3c.mexglx │ ├── floodfill3c.mexmaca64 │ ├── floodfill3c.mexmaci │ ├── floodfill3c.mexmaci64 │ ├── floodfill3c.mexw32 │ ├── floodfill3c.mexw64 │ ├── fminlbfgs.m │ ├── fminsearchbnd.m │ ├── fminsearchcon.m │ ├── fmriqasheet.m │ ├── fmriquality.m │ ├── fracanisotrop.m │ ├── funccallmatrix.m │ ├── fundfreq.m │ ├── fwhm2resel.m │ ├── gammapdf.m │ ├── generategsmask.m │ ├── generatetdx.m │ ├── genwave.m │ ├── glmtstat.m │ ├── gluetostring.m │ ├── gluetostringc.c │ ├── gluetostringc.m │ ├── gluetostringc.mexa64 │ ├── gluetostringc.mexglx │ ├── gluetostringc.mexmaca64 │ ├── gluetostringc.mexmaci │ ├── gluetostringc.mexmaci64 │ ├── gluetostringc.mexw32 │ ├── gluetostringc.mexw64 │ ├── gradmag.m │ ├── gradsmooth.m │ ├── grep.m │ ├── guesssliceorder.m │ ├── harmmean.m │ ├── hasfields.m │ ├── heartbeats.m │ ├── hexdump.m │ ├── histcount.c │ ├── histcount.m │ ├── histcount.mexa64 │ ├── histcount.mexglx │ ├── histcount.mexmaca64 │ ├── histcount.mexmaci │ ├── histcount.mexmaci64 │ ├── histcount.mexw32 │ ├── histcount.mexw64 │ ├── histcountn.m │ ├── histfilter.m │ ├── histmatch.m │ ├── histnd.m │ ├── histplot.m │ ├── histscale.m │ ├── hrf.m │ ├── hrfboost.m │ ├── hsvconv.c │ ├── hsvconv.m │ ├── hsvconv.mexa64 │ ├── hsvconv.mexglx │ ├── hsvconv.mexmaca64 │ ├── hsvconv.mexmaci │ ├── hsvconv.mexmaci64 │ ├── hsvconv.mexw32 │ ├── hsvconv.mexw64 │ ├── icbm2tal.m │ ├── icc.m │ ├── idftextread.m │ ├── im2colslid.m │ ├── image_analyze.m │ ├── image_colrotate.m │ ├── image_complexity.m │ ├── image_font.m │ ├── image_matchprops.m │ ├── image_resize.m │ ├── image_rotate.m │ ├── image_smooth.m │ ├── images2movie.m │ ├── importbesa.m │ ├── importfif.m │ ├── importfmrfromanalyze.m │ ├── importplp.m │ ├── importrfxglmfromafni.m │ ├── importrfxglmfromfsl.m │ ├── importrfxglmfromspms.m │ ├── importtifasvmr.m │ ├── importvmpfromspms.m │ ├── importvmrfromanalyze.m │ ├── importvtcfromanalyze.m │ ├── indepcorrz.m │ ├── indexarray.c │ ├── indexarray.m │ ├── indexarray.mexa64 │ ├── indexarray.mexglx │ ├── indexarray.mexmaca64 │ ├── indexarray.mexmaci │ ├── indexarray.mexmaci64 │ ├── indexarray.mexw32 │ ├── indexarray.mexw64 │ ├── indexarraynb.c │ ├── indexarraynb.m │ ├── indexarraynb.mexa64 │ ├── indexarraynb.mexglx │ ├── indexarraynb.mexmaca64 │ ├── indexarraynb.mexmaci │ ├── indexarraynb.mexmaci64 │ ├── indexarraynb.mexw32 │ ├── indexarraynb.mexw64 │ ├── initialalignment.m │ ├── invnd.m │ ├── invsystem.m │ ├── isectlp.m │ ├── isinfnan.c │ ├── isinfnan.h │ ├── isinfnan.m │ ├── isinfnan.mexa64 │ ├── isinfnan.mexglx │ ├── isinfnan.mexmaca64 │ ├── isinfnan.mexmaci │ ├── isinfnan.mexmaci64 │ ├── isinfnan.mexw32 │ ├── isinfnan.mexw64 │ ├── jksample.m │ ├── joinlayersc.c │ ├── joinlayersc.m │ ├── joinlayersc.mexa64 │ ├── joinlayersc.mexglx │ ├── joinlayersc.mexmaca64 │ ├── joinlayersc.mexmaci │ ├── joinlayersc.mexmaci64 │ ├── joinlayersc.mexw32 │ ├── joinlayersc.mexw64 │ ├── joinstructs.m │ ├── kendtau.m │ ├── kendtaupairsign.c │ ├── kendtaupairsign.m │ ├── kendtaupairsign.mexa64 │ ├── kendtaupairsign.mexglx │ ├── kendtaupairsign.mexmaca64 │ ├── kendtaupairsign.mexmaci │ ├── kendtaupairsign.mexmaci64 │ ├── kendtaupairsign.mexw32 │ ├── kendtaupairsign.mexw64 │ ├── kendtaut.m │ ├── kendtauz.m │ ├── krippalpha.m │ ├── kurt.m │ ├── lalign.m │ ├── license.m │ ├── limitrangec.c │ ├── limitrangec.m │ ├── limitrangec.mexa64 │ ├── limitrangec.mexglx │ ├── limitrangec.mexmaca64 │ ├── limitrangec.mexmaci │ ├── limitrangec.mexmaci64 │ ├── limitrangec.mexw32 │ ├── limitrangec.mexw64 │ ├── limittorange.m │ ├── linscale.m │ ├── litekmeans.m │ ├── lmrainbow.m │ ├── loomeanvar.m │ ├── lsqueeze.m │ ├── lsqueezecells.m │ ├── ltriasc.m │ ├── madistd.m │ ├── mainver.m │ ├── makelabel.m │ ├── mapestsmooth.m │ ├── mappvalue.m │ ├── maxdistcol.m │ ├── maxgrad.m │ ├── maxpos.m │ ├── mdclasswb.m │ ├── mdelete.m │ ├── meannoinfnan.m │ ├── meanpsctrans.m │ ├── mediationpset.m │ ├── memusage.m │ ├── mergehemivmrs.m │ ├── mesh3d.m │ ├── mesh_dist.c │ ├── mesh_dist.m │ ├── mesh_dist.mexa64 │ ├── mesh_dist.mexglx │ ├── mesh_dist.mexmaca64 │ ├── mesh_dist.mexmaci │ ├── mesh_dist.mexmaci64 │ ├── mesh_dist.mexw32 │ ├── mesh_dist.mexw64 │ ├── mesh_morph.c │ ├── mesh_morph.m │ ├── mesh_morph.mexa64 │ ├── mesh_morph.mexglx │ ├── mesh_morph.mexmaca64 │ ├── mesh_morph.mexmaci │ ├── mesh_morph.mexmaci64 │ ├── mesh_morph.mexw32 │ ├── mesh_morph.mexw64 │ ├── mesh_morphm.m │ ├── mesh_neighborsarray.c │ ├── mesh_neighborsarray.m │ ├── mesh_neighborsarray.mexa64 │ ├── mesh_neighborsarray.mexglx │ ├── mesh_neighborsarray.mexmaca64 │ ├── mesh_neighborsarray.mexmaci │ ├── mesh_neighborsarray.mexmaci64 │ ├── mesh_neighborsarray.mexw32 │ ├── mesh_neighborsarray.mexw64 │ ├── mesh_normals.c │ ├── mesh_normals.m │ ├── mesh_normals.mexa64 │ ├── mesh_normals.mexglx │ ├── mesh_normals.mexmaca64 │ ├── mesh_normals.mexmaci │ ├── mesh_normals.mexmaci64 │ ├── mesh_normals.mexw32 │ ├── mesh_normals.mexw64 │ ├── mesh_reconstruct.c │ ├── mesh_reconstruct.m │ ├── mesh_reconstruct.mexa64 │ ├── mesh_reconstruct.mexglx │ ├── mesh_reconstruct.mexmaca64 │ ├── mesh_reconstruct.mexmaci │ ├── mesh_reconstruct.mexmaci64 │ ├── mesh_reconstruct.mexw32 │ ├── mesh_reconstruct.mexw64 │ ├── mesh_reducesphere.m │ ├── mesh_trianglestoneighbors.c │ ├── mesh_trianglestoneighbors.m │ ├── mesh_trianglestoneighbors.mexa64 │ ├── mesh_trianglestoneighbors.mexglx │ ├── mesh_trianglestoneighbors.mexmaca64 │ ├── mesh_trianglestoneighbors.mexmaci │ ├── mesh_trianglestoneighbors.mexmaci64 │ ├── mesh_trianglestoneighbors.mexw32 │ ├── mesh_trianglestoneighbors.mexw64 │ ├── mesh_tridivide.c │ ├── mesh_tridivide.mexa64 │ ├── mesh_tridivide.mexglx │ ├── mesh_tridivide.mexmaca64 │ ├── mesh_tridivide.mexmaci │ ├── mesh_tridivide.mexmaci64 │ ├── mesh_tridivide.mexw32 │ ├── mesh_tridivide.mexw64 │ ├── mesh_trimapmesh.c │ ├── mesh_trimapmesh.m │ ├── mesh_trimapmesh.mexa64 │ ├── mesh_trimapmesh.mexglx │ ├── mesh_trimapmesh.mexmaca64 │ ├── mesh_trimapmesh.mexmaci │ ├── mesh_trimapmesh.mexmaci64 │ ├── mesh_trimapmesh.mexw32 │ ├── mesh_trimapmesh.mexw64 │ ├── mfileparts.m │ ├── minarray.m │ ├── minmaxbbox.m │ ├── minmaxmean.c │ ├── minmaxmean.m │ ├── minmaxmean.mexa64 │ ├── minmaxmean.mexglx │ ├── minmaxmean.mexmaca64 │ ├── minmaxmean.mexmaci │ ├── minmaxmean.mexmaci64 │ ├── minmaxmean.mexw32 │ ├── minmaxmean.mexw64 │ ├── minpos.m │ ├── mkadir.m │ ├── mkda_multivariate.m │ ├── mkda_plp_cluster.m │ ├── mltype.m │ ├── mmregress.m │ ├── mni2tal.m │ ├── modelcomp.m │ ├── modelcompse.m │ ├── montagemix.m │ ├── moveinlist.m │ ├── movieplayer.m │ ├── mp3read.m │ ├── mp3write.m │ ├── mpackage.m │ ├── mrmanova.m │ ├── mrmanova_ssq.m │ ├── mstrrep.m │ ├── mtc_concat.m │ ├── mtimesnd.m │ ├── multimatch.m │ ├── multiset.m │ ├── multislicetovol.m │ ├── ne_about.m │ ├── ne_addatlascluster.m │ ├── ne_addcluster.m │ ├── ne_alphasim.m │ ├── ne_ancova_compute.m │ ├── ne_ancova_open.m │ ├── ne_ancova_ui.m │ ├── ne_audioplayer.m │ ├── ne_averagenii.m │ ├── ne_avgvtcmovie.m │ ├── ne_breakcb.m │ ├── ne_btdown.m │ ├── ne_btmove.m │ ├── ne_btup.m │ ├── ne_bwlabel.m │ ├── ne_clonefile.m │ ├── ne_closefile.m │ ├── ne_closesatwindow.m │ ├── ne_closewindow.m │ ├── ne_clustertable.m │ ├── ne_cm_addcon.m │ ├── ne_cm_addcovs.m │ ├── ne_cm_addgroup.m │ ├── ne_cm_addsubsel.m │ ├── ne_cm_autocons.m │ ├── ne_cm_balancepredweights.m │ ├── ne_cm_clearpredweights.m │ ├── ne_cm_closeui.m │ ├── ne_cm_compute.m │ ├── ne_cm_copycons.m │ ├── ne_cm_coveval.m │ ├── ne_cm_covprops.m │ ├── ne_cm_delcon.m │ ├── ne_cm_delcovs.m │ ├── ne_cm_delgroup.m │ ├── ne_cm_delsubsel.m │ ├── ne_cm_getweights.m │ ├── ne_cm_loadcons.m │ ├── ne_cm_loadcovs.m │ ├── ne_cm_open.m │ ├── ne_cm_rencon.m │ ├── ne_cm_rengroup.m │ ├── ne_cm_rfxswitch.m │ ├── ne_cm_roicovs.m │ ├── ne_cm_savecons.m │ ├── ne_cm_selectcon.m │ ├── ne_cm_selectcovs.m │ ├── ne_cm_selectpreds.m │ ├── ne_cm_selectpweights.m │ ├── ne_cm_selectsubs.m │ ├── ne_cm_selectsubsel.m │ ├── ne_cm_selgroup.m │ ├── ne_cm_setglm.m │ ├── ne_cm_setpredweight.m │ ├── ne_cm_setstype.m │ ├── ne_cm_setweights.m │ ├── ne_cm_smoothdata.m │ ├── ne_cm_updatertv.m │ ├── ne_cm_updateuis.m │ ├── ne_cm_usegroups.m │ ├── ne_console.m │ ├── ne_delcluster.m │ ├── ne_draw.m │ ├── ne_draw_histmarked.m │ ├── ne_draw_loadubuff.m │ ├── ne_echo.m │ ├── ne_exportnii.m │ ├── ne_extcluster.m │ ├── ne_fastica.m │ ├── ne_fb_open.m │ ├── ne_fcprepro.m │ ├── ne_fmriquality.m │ ├── ne_freesurfer.m │ ├── ne_glmgeneratemdm.m │ ├── ne_glmplotbetas.m │ ├── ne_glmplotbetasgui.m │ ├── ne_glmplotbetaskyp.m │ ├── ne_glmplotbetaskyr.m │ ├── ne_glmplotbetasrsz.m │ ├── ne_glmplotbetasup.m │ ├── ne_gzip.m │ ├── ne_hdr_dti.m │ ├── ne_hdr_obliqueslices.m │ ├── ne_hdr_segment.m │ ├── ne_help.m │ ├── ne_httpget.m │ ├── ne_importrfxglm.m │ ├── ne_importvmp.m │ ├── ne_importvmr.m │ ├── ne_initwindow.m │ ├── ne_instscorr.m │ ├── ne_keypress.m │ ├── ne_keypress_uic.m │ ├── ne_keyrelease.m │ ├── ne_limitclusters.m │ ├── ne_loadcluster.m │ ├── ne_loadobjects.m │ ├── ne_loadtransio.m │ ├── ne_lut_edit.m │ ├── ne_markclusters.m │ ├── ne_maskstatswithcls.m │ ├── ne_maskstatswithvmr.m │ ├── ne_mdm_acond.m │ ├── ne_mdm_addfiles.m │ ├── ne_mdm_bfedit.m │ ├── ne_mdm_browse.m │ ├── ne_mdm_closeui.m │ ├── ne_mdm_compute.m │ ├── ne_mdm_delfiles.m │ ├── ne_mdm_ffiles.m │ ├── ne_mdm_filtsetone.m │ ├── ne_mdm_loadmdm.m │ ├── ne_mdm_modelsetone.m │ ├── ne_mdm_open.m │ ├── ne_mdm_regsetone.m │ ├── ne_mdm_savemdm.m │ ├── ne_mdm_select.m │ ├── ne_mdm_selectmask.m │ ├── ne_mdm_setglmfile.m │ ├── ne_mdm_showopt.m │ ├── ne_mdm_togglerps.m │ ├── ne_mdm_transsetone.m │ ├── ne_mdm_updatemdm.m │ ├── ne_mdm_updateui.m │ ├── ne_mdmqcglobtc.m │ ├── ne_mdmqcvtc.m │ ├── ne_mdmvoicondavg.m │ ├── ne_mdmvoicondavggui.m │ ├── ne_mdmvoicondavgrsz.m │ ├── ne_mdmvoicondavgup.m │ ├── ne_mkda.m │ ├── ne_mkda_addana.m │ ├── ne_mkda_closeui.m │ ├── ne_mkda_conds.m │ ├── ne_mkda_delana.m │ ├── ne_mkda_delplpcol.m │ ├── ne_mkda_delplppts.m │ ├── ne_mkda_import.m │ ├── ne_mkda_listpoints.m │ ├── ne_mkda_load.m │ ├── ne_mkda_parsecont.m │ ├── ne_mkda_plotonslice.m │ ├── ne_mkda_plotonsurf.m │ ├── ne_mkda_plotsetcolor.m │ ├── ne_mkda_readui.m │ ├── ne_mkda_renana.m │ ├── ne_mkda_run.m │ ├── ne_mkda_save.m │ ├── ne_mkda_setana.m │ ├── ne_mkda_setcondcol.m │ ├── ne_mkda_setcondval.m │ ├── ne_mkda_setcontcol.m │ ├── ne_mkda_setoption.m │ ├── ne_mkda_setplp.m │ ├── ne_mkda_updana.m │ ├── ne_movestatmap.m │ ├── ne_multiimage.m │ ├── ne_neurosynth.m │ ├── ne_newfile.m │ ├── ne_openfile.m │ ├── ne_openreffile.m │ ├── ne_openstatsfile.m │ ├── ne_physio.m │ ├── ne_physio_browse.m │ ├── ne_physio_datakind.m │ ├── ne_physio_load.m │ ├── ne_physio_newsfreq.m │ ├── ne_physio_process.m │ ├── ne_physio_resample.m │ ├── ne_physio_sfedit.m │ ├── ne_physio_togglerwc.m │ ├── ne_pinesexp.m │ ├── ne_progress.m │ ├── ne_recentfiles.m │ ├── ne_reloadfile.m │ ├── ne_remote.m │ ├── ne_renamedicom.m │ ├── ne_render.m │ ├── ne_render_closeui.m │ ├── ne_render_ex.m │ ├── ne_render_setview.m │ ├── ne_render_smoothstats.m │ ├── ne_render_updateui.m │ ├── ne_rm_closeui.m │ ├── ne_rm_compute.m │ ├── ne_rm_open.m │ ├── ne_rm_select.m │ ├── ne_rm_setglm.m │ ├── ne_satresize.m │ ├── ne_satsetcolor.m │ ├── ne_savecluster.m │ ├── ne_savefile.m │ ├── ne_savetcsdm.m │ ├── ne_savetextoutput.m │ ├── ne_scenerylist.m │ ├── ne_sceneryselect.m │ ├── ne_scenerytrans.m │ ├── ne_screenshot.m │ ├── ne_selectfile.m │ ├── ne_setcluster.m │ ├── ne_setcsrf.m │ ├── ne_setcsrfstatbars.m │ ├── ne_setcsrfstatmap.m │ ├── ne_setcsrfstats.m │ ├── ne_setcstatmap.m │ ├── ne_setcstatmapformula.m │ ├── ne_setcstatmapproj.m │ ├── ne_setcstatmapprops.m │ ├── ne_setcstats.m │ ├── ne_setcvar.m │ ├── ne_setdrawmode.m │ ├── ne_setglobaltrf.m │ ├── ne_setoption.m │ ├── ne_setrgbcolor.m │ ├── ne_setsatslicepos.m │ ├── ne_setsceneproj.m │ ├── ne_setsceneprops.m │ ├── ne_setslicepos.m │ ├── ne_setsrfcluster.m │ ├── ne_setstatsplitc.m │ ├── ne_setstatthr.m │ ├── ne_setstatthrccheck.m │ ├── ne_setstatthrcolor.m │ ├── ne_setstatthrpval.m │ ├── ne_setstatthrtails.m │ ├── ne_setsurfpos.m │ ├── ne_setunderlay.m │ ├── ne_setvartrf.m │ ├── ne_setview.m │ ├── ne_setwindowpos.m │ ├── ne_showpage.m │ ├── ne_showsatpage.m │ ├── ne_smoothstats.m │ ├── ne_smp_combine.m │ ├── ne_smp_save.m │ ├── ne_spmmat2prt.m │ ├── ne_spmmat2sdm.m │ ├── ne_spmmip.m │ ├── ne_spmxprepro.m │ ├── ne_sqrtm.m │ ├── ne_srf_reload.m │ ├── ne_srf_save.m │ ├── ne_srf_tools.m │ ├── ne_srfupdatecoords.m │ ├── ne_statsmenu.m │ ├── ne_surfmontage.m │ ├── ne_surfmontage_closeui.m │ ├── ne_surfmontage_create.m │ ├── ne_surfmontage_ui.m │ ├── ne_svmpredict.m │ ├── ne_svmtrain.m │ ├── ne_swapfullsize.m │ ├── ne_tcbtdown.m │ ├── ne_tcbtmove.m │ ├── ne_tcmovie.m │ ├── ne_tcundock.m │ ├── ne_tdclient.m │ ├── ne_togglelinked.m │ ├── ne_undock.m │ ├── ne_unloadobjects.m │ ├── ne_updatename.m │ ├── ne_updatesmpprops.m │ ├── ne_vismontage.m │ ├── ne_vismontage_bgcol.m │ ├── ne_vismontage_closeui.m │ ├── ne_vismontage_create.m │ ├── ne_vismontage_create3s.m │ ├── ne_vismontage_create_ex.m │ ├── ne_vismontage_updateui.m │ ├── ne_visspmrp.m │ ├── ne_vmp_applyfdr.m │ ├── ne_vmp_applysvc.m │ ├── ne_vmp_combine.m │ ├── ne_vmp_createmsk.m │ ├── ne_vmp_createsmp.m │ ├── ne_vmp_threshmaps.m │ ├── ne_vmp_writeana.m │ ├── ne_vmpplotbetas.m │ ├── ne_vmr_clean.m │ ├── ne_vmr_dbreco.m │ ├── ne_vmr_exportrgb.m │ ├── ne_vmr_ihc.m │ ├── ne_vmr_limitvmr.m │ ├── ne_vmr_peelbrain.m │ ├── ne_voimenu.m │ ├── ne_vtc_filter.m │ ├── ne_vtc_meanstdvmp.m │ ├── nepp_tosingle.m │ ├── neuroelf_makefiles.m │ ├── neuroelf_makelibs.m │ ├── neuroelf_makeshenfiles.m │ ├── neuroelf_pack.m │ ├── neuroelf_splash.m │ ├── neuroelf_sptexts.m │ ├── neuroelf_updatebuilds.m │ ├── newhdr.m │ ├── newhiresvmr.m │ ├── newnatresvmp.m │ ├── newnii.m │ ├── niftiskipvols.m │ ├── noinfnan.m │ ├── nonparclustsim.m │ ├── normcdfc.c │ ├── normcdfc.m │ ├── normcdfc.mexa64 │ ├── normcdfc.mexglx │ ├── normcdfc.mexmaca64 │ ├── normcdfc.mexmaci │ ├── normcdfc.mexmaci64 │ ├── normcdfc.mexw32 │ ├── normcdfc.mexw64 │ ├── normvecs.m │ ├── numberofties.m │ ├── numword.m │ ├── onesamplet.m │ ├── onsetshifttest.m │ ├── orthimage.m │ ├── orthsdm.m │ ├── orthvec.m │ ├── orthvecs.m │ ├── ostype.m │ ├── osz.m │ ├── otsulevel.m │ ├── packmosaic.m │ ├── pairs.m │ ├── parseformula.m │ ├── parseopts.m │ ├── partoanalyze75.m │ ├── patchmfilecode.m │ ├── permuteseqnr.m │ ├── persubjectglms.m │ ├── plotbands.m │ ├── plotcurves.m │ ├── plurals.m │ ├── pmbfilter.m │ ├── pmpalignment.m │ ├── poolgroups.m │ ├── poolnonsingletrial.m │ ├── prctilend.m │ ├── prefilter.m │ ├── progresscount.m │ ├── psctrans.m │ ├── psetdists.c │ ├── psetdists.m │ ├── psetdists.mexa64 │ ├── psetdists.mexglx │ ├── psetdists.mexmaca64 │ ├── psetdists.mexmaci │ ├── psetdists.mexmaci64 │ ├── psetdists.mexw32 │ ├── psetdists.mexw64 │ ├── ptb_drawscene.m │ ├── ptb_initscreen.m │ ├── ptb_waitforkey.m │ ├── pwelch.m │ ├── quattrans.h │ ├── rangegrid.m │ ├── ranktrans.m │ ├── rbalign.m │ ├── rdaio.m │ ├── readbesa.m │ ├── readeprimetextlog.m │ ├── readhrv.m │ ├── readpar.m │ ├── reccheck.m │ ├── recordkeys.m │ ├── regress_coords.m │ ├── relfilename.m │ ├── renamedicom.m │ ├── renamefields.m │ ├── renamefile.m │ ├── render_volume.m │ ├── renderlayers.c │ ├── renderlayers.m │ ├── renderlayers.mexa64 │ ├── renderlayers.mexglx │ ├── renderlayers.mexmaca64 │ ├── renderlayers.mexmaci │ ├── renderlayers.mexmaci64 │ ├── renderlayers.mexw32 │ ├── renderlayers.mexw64 │ ├── renderv3d.m │ ├── renderv3dub.c │ ├── renderv3dub.m │ ├── renderv3dub.mexa64 │ ├── renderv3dub.mexglx │ ├── renderv3dub.mexmaca64 │ ├── renderv3dub.mexmaci │ ├── renderv3dub.mexmaci64 │ ├── renderv3dub.mexw32 │ ├── renderv3dub.mexw64 │ ├── renderv3dvm.m │ ├── renderv3dxia.c │ ├── renderv3dxia.m │ ├── renderv3dxia.mexa64 │ ├── renderv3dxia.mexglx │ ├── renderv3dxia.mexmaca64 │ ├── renderv3dxia.mexmaci │ ├── renderv3dxia.mexmaci64 │ ├── renderv3dxia.mexw32 │ ├── renderv3dxia.mexw64 │ ├── repbadvs.m │ ├── replacerobmean.m │ ├── resampleaa.m │ ├── resestsmooth.m │ ├── resestsmoothsrf.m │ ├── resolvetransio.m │ ├── rmanova2w.m │ ├── rmean.m │ ├── rms.m │ ├── robcorrcoef.m │ ├── robscatter.m │ ├── robustF.m │ ├── robustmean.m │ ├── robustnsamplet.m │ ├── robustnsamplet_img.m │ ├── robustt.m │ ├── robwcov.m │ ├── safecon.m │ ├── samelengthfilenames.m │ ├── samplefaevec.m │ ├── samplefmrspace.m │ ├── scaledata.m │ ├── scaleimage.m │ ├── sdist.m │ ├── selectstruct.m │ ├── seqtrans.m │ ├── setinfnantomean.m │ ├── setinfnantoval.m │ ├── setsparseval.c │ ├── setsparseval.m │ ├── setsparseval.mexa64 │ ├── setsparseval.mexglx │ ├── setsparseval.mexmaca64 │ ├── setsparseval.mexmaci │ ├── setsparseval.mexmaci64 │ ├── setsparseval.mexw32 │ ├── setsparseval.mexw64 │ ├── showspmrparams.m │ ├── showvtcsize.m │ ├── shrinkfg.m │ ├── shufflelist.m │ ├── signpermt.m │ ├── simcluster.m │ ├── singletrialprts.m │ ├── skarlags.m │ ├── skew.m │ ├── sldegdet.m │ ├── sliceranges.m │ ├── slidequant.m │ ├── slloco.m │ ├── slmdclassify.m │ ├── slmdnclassify.m │ ├── slnbc.m │ ├── slrdm.m │ ├── slrms.m │ ├── slrsa.m │ ├── slsvmclassify.m │ ├── sltargets.m │ ├── sltime2feat.m │ ├── slttest.m │ ├── slydetrend.m │ ├── smoothdata3.m │ ├── smoothimg.m │ ├── smoothkern.m │ ├── smoothned.m │ ├── smpdist.m │ ├── solvesudoku.m │ ├── solvewordbrain.m │ ├── spatent.m │ ├── spherecoords.m │ ├── spherecoordsinv.m │ ├── spheresrf.m │ ├── spherevmr.m │ ├── splitclustercoords.m │ ├── splittocell.m │ ├── splittocellc.c │ ├── splittocellc.m │ ├── splittocellc.mexa64 │ ├── splittocellc.mexglx │ ├── splittocellc.mexmaca64 │ ├── splittocellc.mexmaci │ ├── splittocellc.mexmaci64 │ ├── splittocellc.mexw32 │ ├── splittocellc.mexw64 │ ├── spmitrf.m │ ├── spmm2q.m │ ├── spmmat2prt.m │ ├── spmmat2sdm.m │ ├── spmq2m.m │ ├── spmtrf.m │ ├── spmx_extract_brain.m │ ├── spmx_preprojobs.m │ ├── spmx_updatejobs.m │ ├── sprintfbx.c │ ├── sprintfbx.m │ ├── sprintfbx.mexa64 │ ├── sprintfbx.mexglx │ ├── sprintfbx.mexmaca64 │ ├── sprintfbx.mexmaci │ ├── sprintfbx.mexmaci64 │ ├── sprintfbx.mexw32 │ ├── sprintfbx.mexw64 │ ├── srfalignment.m │ ├── srfbvxalign.m │ ├── stcluster.m │ ├── stcorrect.m │ ├── stinconsistent.m │ ├── stoufferz.m │ ├── structdiff.m │ ├── sub2ind1.m │ ├── subclusters.m │ ├── subget.m │ ├── svcvolume.m │ ├── svm2x.cpp │ ├── svm2x.h │ ├── svm3x.cpp │ ├── svm3x.def │ ├── svm3x.h │ ├── svm3xmodel.c │ ├── svm3xmodel.h │ ├── svmpredictc2x.c │ ├── svmpredictc2x.mexa64 │ ├── svmpredictc2x.mexglx │ ├── svmpredictc2x.mexmaca64 │ ├── svmpredictc2x.mexmaci │ ├── svmpredictc2x.mexmaci64 │ ├── svmpredictc2x.mexw32 │ ├── svmpredictc2x.mexw64 │ ├── svmpredictc3x.c │ ├── svmpredictc3x.mexa64 │ ├── svmpredictc3x.mexglx │ ├── svmpredictc3x.mexmaca64 │ ├── svmpredictc3x.mexmaci │ ├── svmpredictc3x.mexmaci64 │ ├── svmpredictc3x.mexw32 │ ├── svmpredictc3x.mexw64 │ ├── svmreadc3x.c │ ├── svmreadc3x.mexa64 │ ├── svmreadc3x.mexglx │ ├── svmreadc3x.mexmaca64 │ ├── svmreadc3x.mexmaci │ ├── svmreadc3x.mexmaci64 │ ├── svmreadc3x.mexw32 │ ├── svmreadc3x.mexw64 │ ├── svmtrainc2x.c │ ├── svmtrainc2x.mexa64 │ ├── svmtrainc2x.mexglx │ ├── svmtrainc2x.mexmaca64 │ ├── svmtrainc2x.mexmaci │ ├── svmtrainc2x.mexmaci64 │ ├── svmtrainc2x.mexw32 │ ├── svmtrainc2x.mexw64 │ ├── svmtrainc3x.c │ ├── svmtrainc3x.mexa64 │ ├── svmtrainc3x.mexglx │ ├── svmtrainc3x.mexmaca64 │ ├── svmtrainc3x.mexmaci │ ├── svmtrainc3x.mexmaci64 │ ├── svmtrainc3x.mexw32 │ ├── svmtrainc3x.mexw64 │ ├── svmwritec3x.c │ ├── svmwritec3x.mexa64 │ ├── svmwritec3x.mexglx │ ├── svmwritec3x.mexmaca64 │ ├── svmwritec3x.mexmaci │ ├── svmwritec3x.mexmaci64 │ ├── svmwritec3x.mexw32 │ ├── svmwritec3x.mexw64 │ ├── sxcorr.m │ ├── tablesextract.m │ ├── tal2acpc.m │ ├── tal2icbm.m │ ├── tal2mni.m │ ├── tario.m │ ├── tcchecksum.m │ ├── tcpdump_parse.m │ ├── tcplot.m │ ├── tdclient.m │ ├── tdgrayscale.m │ ├── tdlabel.m │ ├── tdlocal2.m │ ├── tempfilter.m │ ├── testfilters.m │ ├── testjittershifts.m │ ├── textcrypt.m │ ├── textline.m │ ├── tffdocu.m │ ├── tffio.m │ ├── tffparse.m │ ├── tfgparse.m │ ├── tfmatrix.m │ ├── threshlutc.c │ ├── threshlutc.m │ ├── threshlutc.mexa64 │ ├── threshlutc.mexglx │ ├── threshlutc.mexmaca64 │ ├── threshlutc.mexmaci │ ├── threshlutc.mexmaci64 │ ├── threshlutc.mexw32 │ ├── threshlutc.mexw64 │ ├── threshmapc.c │ ├── threshmapc.m │ ├── threshmapc.mexa64 │ ├── threshmapc.mexglx │ ├── threshmapc.mexmaca64 │ ├── threshmapc.mexmaci │ ├── threshmapc.mexmaci64 │ ├── threshmapc.mexw32 │ ├── threshmapc.mexw64 │ ├── tile_svs.m │ ├── tmpestsmooth.m │ ├── transmul.c │ ├── transmul.m │ ├── transmul.mexa64 │ ├── transmul.mexglx │ ├── transmul.mexmaca64 │ ├── transmul.mexmaci │ ├── transmul.mexmaci64 │ ├── transmul.mexw32 │ ├── transmul.mexw64 │ ├── tstfrommsw.m │ ├── u8str2double.c │ ├── u8str2double.m │ ├── u8str2double.mexa64 │ ├── u8str2double.mexglx │ ├── u8str2double.mexmaca64 │ ├── u8str2double.mexmaci │ ├── u8str2double.mexmaci64 │ ├── u8str2double.mexw32 │ ├── u8str2double.mexw64 │ ├── uint322colcode.m │ ├── unpackmosaic.m │ ├── unzerostring.m │ ├── utc.m │ ├── uunion.m │ ├── varc.c │ ├── varc.m │ ├── varc.mexa64 │ ├── varc.mexglx │ ├── varc.mexmaca64 │ ├── varc.mexmaci │ ├── varc.mexmaci64 │ ├── varc.mexw32 │ ├── varc.mexw64 │ ├── varweights.m │ ├── vifactor.m │ ├── vmrsegment.m │ ├── vmrspmcoreg.m │ ├── vmvreadpos.m │ ├── vmvwritepos.m │ ├── vtc_concat.m │ ├── vtccondaverage.m │ ├── vtcregressout.m │ ├── winsorize.m │ ├── writemat.m │ ├── writestcfiles.m │ ├── wrpembed.m │ ├── wvartally.m │ ├── xffcompare.m │ ├── xffsrfparseneighbors.m │ ├── xffsrfparseneighborsc.c │ ├── xffsrfparseneighborsc.mexa64 │ ├── xffsrfparseneighborsc.mexglx │ ├── xffsrfparseneighborsc.mexmaca64 │ ├── xffsrfparseneighborsc.mexmaci │ ├── xffsrfparseneighborsc.mexmaci64 │ ├── xffsrfparseneighborsc.mexw32 │ ├── xffsrfparseneighborsc.mexw64 │ ├── xffsrfwriteneighbors.m │ ├── xffsrfwriteneighborsc.c │ ├── xffsrfwriteneighborsc.mexa64 │ ├── xffsrfwriteneighborsc.mexglx │ ├── xffsrfwriteneighborsc.mexmaca64 │ ├── xffsrfwriteneighborsc.mexmaci │ ├── xffsrfwriteneighborsc.mexmaci64 │ ├── xffsrfwriteneighborsc.mexw32 │ ├── xffsrfwriteneighborsc.mexw64 │ ├── zerodstring.m │ ├── zsz.m │ └── ztrans.m ├── subsref.m └── using.m ├── @transimg ├── addlayer.m ├── any2ascii.m ├── delete.m ├── dellayer.m ├── display.m ├── handle.m ├── joinlayers.m ├── private │ └── ti_renderlayer.m ├── render.m ├── setbackground.m ├── sethandle.m ├── setlayer.m ├── setlayeralpha.m ├── setlayerpixel.m ├── setlayertrans.m ├── subsref.m └── transimg.m ├── @transio ├── any2ascii.m ├── buffer.m ├── cat.m ├── class.m ├── datatype.m ├── display.m ├── double.m ├── end.m ├── eq.m ├── filename.m ├── ge.m ├── gt.m ├── horzcat.m ├── isempty.m ├── isinf.m ├── isnan.m ├── isnumeric.m ├── isreal.m ├── le.m ├── littleendian.m ├── lt.m ├── minus.m ├── mpower.m ├── mrdivide.m ├── mtimes.m ├── ndims.m ├── ne.m ├── numel.m ├── offset.m ├── plus.m ├── power.m ├── private │ └── ioidx.m ├── rdivide.m ├── reshape.m ├── resolve.m ├── single.m ├── size.m ├── subsasgn.m ├── subsref.m ├── times.m ├── transio.m └── vertcat.m ├── @xff ├── Call.m ├── any2ascii.m ├── disp.m ├── isxff.m ├── private │ ├── acq_ChannelData.m │ ├── acq_Filter.m │ ├── acq_Resample.m │ ├── acq_SampleData.m │ ├── aft_AddToCleanUp.m │ ├── aft_ApplyTrf.m │ ├── aft_BackProject.m │ ├── aft_BoundingBox.m │ ├── aft_Browse.m │ ├── aft_ClearObject.m │ ├── aft_ClusterTable.m │ ├── aft_ComputeFormula.m │ ├── aft_CopyObject.m │ ├── aft_Coregister.m │ ├── aft_CreateSMP.m │ ├── aft_DeleteHandle.m │ ├── aft_ExportNifti.m │ ├── aft_FilenameOnDisk.m │ ├── aft_Filenumber.m │ ├── aft_Filetype.m │ ├── aft_GetVolume.m │ ├── aft_GetVolumeSize.m │ ├── aft_Handles.m │ ├── aft_Help.m │ ├── aft_Info.m │ ├── aft_IntensityMask.m │ ├── aft_LabelCoords.m │ ├── aft_Layout.m │ ├── aft_LoadTransIOData.m │ ├── aft_MapNames.m │ ├── aft_MaskWithMSK.m │ ├── aft_MaskWithVMR.m │ ├── aft_PrepForConnectivity.m │ ├── aft_ReloadFromDisk.m │ ├── aft_RemoveEntries.m │ ├── aft_RenderToTransimg.m │ ├── aft_ReorderVertices.m │ ├── aft_Reslice.m │ ├── aft_SampleBVBox.m │ ├── aft_SampleData3D.m │ ├── aft_SampleTalBox.m │ ├── aft_Save.m │ ├── aft_SaveAs.m │ ├── aft_SaveRunTimeVars.m │ ├── aft_SetColors.m │ ├── aft_SetHandle.m │ ├── aft_SetOrientation.m │ ├── aft_SetScalingWindow.m │ ├── aft_ShenFingerPrint.m │ ├── aft_SliceData3D.m │ ├── aft_SliceToTransimg.m │ ├── aft_SmoothData3D.m │ ├── aft_TimeCourseCorr.m │ ├── aft_UnBrowse.m │ ├── aft_VOITimeCourse.m │ ├── aft_fMRIWeights.m │ ├── amr_InterpolateTo256x256.m │ ├── avg_Average.m │ ├── avg_Plot.m │ ├── bvx_GetVar.m │ ├── cmp_AddComponent.m │ ├── cmp_SaveAsMAPs.m │ ├── czi_CountCells.m │ ├── dcm_PixelData.m │ ├── dcm_Value.m │ ├── dmr_CoordinateFrame.m │ ├── dmr_LoadDWI.m │ ├── dmr_MaskWithVMR.m │ ├── dmr_SaveDWI.m │ ├── dtsf_SaveAsFBR.m │ ├── fbr_CreateVMR.m │ ├── fif_CreateCTC.m │ ├── fif_FreeElements.m │ ├── fif_LoadChannelData.m │ ├── fif_ReadElements.m │ ├── fif_ReadInfoHeaders.m │ ├── fif_Value.m │ ├── fif_WritePOS.m │ ├── fif_WriteSFH.m │ ├── fmr_ConvertToDMR.m │ ├── fmr_CoordinateFrame.m │ ├── fmr_CreateAMR.m │ ├── fmr_CreatePseudoVMR.m │ ├── fmr_CrossCorrelate.m │ ├── fmr_Filter.m │ ├── fmr_GenerateSTC.m │ ├── fmr_GlobalTC.m │ ├── fmr_ICA.m │ ├── fmr_LoadSTC.m │ ├── fmr_MaskFromPseudoVMR.m │ ├── fmr_Realign.m │ ├── fmr_ReorderSlices.m │ ├── fmr_Resample.m │ ├── fmr_SaveSTC.m │ ├── fmr_SliceTiming.m │ ├── fsbf_ApplySSM.m │ ├── fsbf_ApplyTSM.m │ ├── fsbf_Area.m │ ├── fsbf_BackToVMR.m │ ├── fsbf_Combine.m │ ├── fsbf_CurvatureMap.m │ ├── fsbf_DensityMap.m │ ├── fsbf_Inflate.m │ ├── fsbf_Morph.m │ ├── fsbf_RecalcNormals.m │ ├── fsbf_SaveAsSRF.m │ ├── fsbf_Smooth.m │ ├── glm_Anova.m │ ├── glm_ClusterBetas.m │ ├── glm_ConvertToVMP.m │ ├── glm_FFX_tMap.m │ ├── glm_FillMissingVertices.m │ ├── glm_GenerateMDM.m │ ├── glm_JoinFFX.m │ ├── glm_JoinRFX.m │ ├── glm_NrOfMaps.m │ ├── glm_POIBetas.m │ ├── glm_PlotBetas.m │ ├── glm_RFX_RemovePredictors.m │ ├── glm_RFX_conmaps.m │ ├── glm_RFX_rMap.m │ ├── glm_RFX_tMap.m │ ├── glm_RemoveSubject.m │ ├── glm_ReorderPredictors.m │ ├── glm_ReplaceSubjects.m │ ├── glm_Searchlight.m │ ├── glm_SubjectPredictors.m │ ├── glm_Subjects.m │ ├── glm_VOIBetas.m │ ├── glm_VOICorrelations.m │ ├── glm_WriteAnalyzeBetas.m │ ├── hdr_CoordinateFrame.m │ ├── hdr_DTITrackEVs.m │ ├── hdr_Dyn3DToFMR.m │ ├── hdr_Dyn3DToVTC.m │ ├── hdr_InhomogeneityCorrect.m │ ├── hdr_LoadVoxelData.m │ ├── hdr_NrOfVolumes.m │ ├── hdr_SaveVoxelData.m │ ├── hdr_SetObliqueSlicing.m │ ├── hdr_SliceTiming.m │ ├── hdr_UnclipFieldmap.m │ ├── hdr_UpdateHeader.m │ ├── head_CoordinateFrame.m │ ├── map_CreateVMP.m │ ├── mat_ChannelData.m │ ├── mat_Filter.m │ ├── mat_Resample.m │ ├── mat_SampleData.m │ ├── mdm_CheckFiles.m │ ├── mdm_ComputeGLM.m │ ├── mdm_ComputeVOIGLM.m │ ├── mdm_ConditionOnsets.m │ ├── mdm_POITimeCourses.m │ ├── mdm_ReframeVTCs.m │ ├── mdm_RetestReliability.m │ ├── mdm_SDMs.m │ ├── mdm_ShenFingerPrintAnalysis.m │ ├── mdm_Subjects.m │ ├── mdm_VOICondAverage.m │ ├── mdm_VOITimeCourses.m │ ├── mdm_VTCCondAverage.m │ ├── mgh_CoordinateFrame.m │ ├── msk_ApplyTo.m │ ├── msk_Coords.m │ ├── mtc_ApplySSM.m │ ├── mtc_ApplyTSM.m │ ├── mtc_CreateGLM.m │ ├── mtc_NrOfMaps.m │ ├── mtc_POITimeCourse.m │ ├── mtc_RegressOut.m │ ├── mtc_Resample.m │ ├── mtc_SmoothIterativeNN.m │ ├── mtc_SmoothnessSMP.m │ ├── ntt_ChannelData.m │ ├── ntt_CleanupStimChannel.m │ ├── ntt_Filter.m │ ├── ntt_Resample.m │ ├── ntt_SampleData.m │ ├── pfs_DirList.m │ ├── pfs_GetAllProperties.m │ ├── pfs_GetPropertyNr.m │ ├── pfs_LocateProperty.m │ ├── plp_AddColumn.m │ ├── plp_CPointsAtCoord.m │ ├── plp_ClusterColorSize.m │ ├── plp_MKDA.m │ ├── plp_PlotOnSlice.m │ ├── plp_PlotOnSurface.m │ ├── plp_ReduceToMKDAMask.m │ ├── plp_Select.m │ ├── plp_TDDLabelGM.m │ ├── pmp_Sample.m │ ├── poi_Area.m │ ├── poi_POINames.m │ ├── prt_AddCond.m │ ├── prt_AddRest.m │ ├── prt_CleanUp.m │ ├── prt_Collapse.m │ ├── prt_Concatenate.m │ ├── prt_ConditionNames.m │ ├── prt_ConvertToMS.m │ ├── prt_ConvertToSingleTrial.m │ ├── prt_ConvertToVol.m │ ├── prt_CreateSDM.m │ ├── prt_ImportStimChannels.m │ ├── prt_OnOffsets.m │ ├── prt_RemodelISIs.m │ ├── prt_SaveRegressorFiles.m │ ├── prt_SaveSPMConditionMAT.m │ ├── prt_SetDuration.m │ ├── prt_ShiftOnsets.m │ ├── prt_ShuffleLabels.m │ ├── rda_VarNames.m │ ├── root_ClearObjects.m │ ├── root_Config.m │ ├── root_Document.m │ ├── root_Documents.m │ ├── root_Help.m │ ├── root_New.m │ ├── root_TransIOSize.m │ ├── root_UpdateState.m │ ├── sdm_AddFilters.m │ ├── sdm_CalcBetas.m │ ├── sdm_Concatenate.m │ ├── sdm_EstimateCondOnOffsets.m │ ├── sdm_PPI.m │ ├── sdm_ShowDesign.m │ ├── smp_ApplyTSM.m │ ├── smp_ClusterTable.m │ ├── smp_Combine.m │ ├── smp_CreatePMP.m │ ├── smp_Smooth.m │ ├── smp_SplitCCRetinoMap.m │ ├── spss_ImportData.m │ ├── srf_AddBitmap.m │ ├── srf_AddDipoles.m │ ├── srf_AddMarkers.m │ ├── srf_AddSurfacePoints.m │ ├── srf_ApplySPMsn.m │ ├── srf_ApplySSM.m │ ├── srf_ApplyTSM.m │ ├── srf_Area.m │ ├── srf_AsTRK.m │ ├── srf_BackToVMR.m │ ├── srf_BadVoxelVOI.m │ ├── srf_ColorLabels.m │ ├── srf_Combine.m │ ├── srf_CreateVMVfromMTC.m │ ├── srf_CreateVMVfromSMP.m │ ├── srf_CurvatureColor.m │ ├── srf_CurvatureMap.m │ ├── srf_DensityMap.m │ ├── srf_FindSpikes.m │ ├── srf_Inflate.m │ ├── srf_MarkPOI.m │ ├── srf_MarkSpikes.m │ ├── srf_Morph.m │ ├── srf_MorphTo.m │ ├── srf_NeighborsNDegree.m │ ├── srf_RecalcNormals.m │ ├── srf_RecoSMToSphere.m │ ├── srf_RecoToSphere.m │ ├── srf_Reduce.m │ ├── srf_SaveAsBYU.m │ ├── srf_SaveAsJVX.m │ ├── srf_SaveAsOBJ.m │ ├── srf_SaveAsPLY.m │ ├── srf_SaveAsTRK.m │ ├── srf_SaveAsVTK.m │ ├── srf_SelectFibers.m │ ├── srf_SetCoordsTriangles.m │ ├── srf_SetSmoothingInfo.m │ ├── srf_Show.m │ ├── srf_ShrinkSpikes.m │ ├── srf_Smooth.m │ ├── srf_SphereToSphereMapCoord.m │ ├── srf_SphereToSphereMapTri.m │ ├── srf_SpreadColor.m │ ├── srf_ToSphere.m │ ├── srf_Transform.m │ ├── srf_TrianglesToNeighbors.m │ ├── srf_UnfoldSmooth.m │ ├── srf_UpdateNeighbors.m │ ├── t2k_DecodeByteStream.m │ ├── tar_FilesByContent.m │ ├── tar_FilesByName.m │ ├── tom_Area.m │ ├── tom_ConvertToSRF.m │ ├── tom_ExtractSpot.m │ ├── tom_ExtractSpots.m │ ├── tom_ListSpots.m │ ├── tom_MarkSpot.m │ ├── tom_ProjectionMap.m │ ├── uff_ReadFile.m │ ├── vmp_ClusterROIs.m │ ├── vmp_ConvertToNatRes.m │ ├── vmp_ConvertToVTC.m │ ├── vmp_CorrelateMapsWithVOI.m │ ├── vmp_CreateMSK.m │ ├── vmp_ImportSPMMaps.m │ ├── vmp_MakeHiResVMP.m │ ├── vmp_PerformFDR.m │ ├── vmp_SaveAsVMR.m │ ├── vmp_SaveSubset.m │ ├── vmp_Update.m │ ├── vmp_VoxelStats.m │ ├── vmp_WriteAnalyzeVol.m │ ├── vmr_ApplyTRF.m │ ├── vmr_CleanVMR.m │ ├── vmr_CoordinateFrame.m │ ├── vmr_CreateVTC.m │ ├── vmr_DBReco.m │ ├── vmr_GradientVMR.m │ ├── vmr_HiResRescale.m │ ├── vmr_InhomogeneityCorrect.m │ ├── vmr_LimitVMR.m │ ├── vmr_LoadV16.m │ ├── vmr_MaskWithVMR.m │ ├── vmr_MinBox.m │ ├── vmr_PeelBrain.m │ ├── vmr_PrepareForReco.m │ ├── vmr_Reframe.m │ ├── vmr_SaveV16.m │ ├── vmr_SetConvention.m │ ├── vmr_Talairach.m │ ├── vmr_Update.m │ ├── vmr_WriteAnalyzeVol.m │ ├── voi_AddSphericalVOI.m │ ├── voi_ApplyTrf.m │ ├── voi_BVCoords.m │ ├── voi_Combine.m │ ├── voi_CreateMSK.m │ ├── voi_CreateVMR.m │ ├── voi_Details.m │ ├── voi_ImportClusters.m │ ├── voi_SortCoords.m │ ├── voi_SystemCoords.m │ ├── voi_TalCoords.m │ ├── voi_ToISO.m │ ├── voi_VOINames.m │ ├── voi_Voxels.m │ ├── vtc_AverageMovieVMP.m │ ├── vtc_AveragePeak.m │ ├── vtc_CombineAvgTCs.m │ ├── vtc_Correlate.m │ ├── vtc_CreateFuncVMR.m │ ├── vtc_CreateGLM.m │ ├── vtc_CreateMTC.m │ ├── vtc_CrossCorrelate.m │ ├── vtc_Filter.m │ ├── vtc_ICA.m │ ├── vtc_JoinAvgTCs.m │ ├── vtc_LocalCoherence.m │ ├── vtc_MeanSRFTimeCourse.m │ ├── vtc_MeanStd.m │ ├── vtc_MinFrame.m │ ├── vtc_Reframe.m │ ├── vtc_RegressOut.m │ ├── vtc_Resample.m │ ├── vtc_Update.m │ ├── vtc_VOITimeCourseOrig.m │ ├── vtc_WriteAnalyzeVol.m │ ├── vtk_ConvertToSRF.m │ ├── vvd_CalcROIBetas.m │ ├── wav_Play.m │ ├── xffclear.m │ ├── xffcopyobject.m │ ├── xffdetectmagic.m │ ├── xffdtsfparsefibers.m │ ├── xffdtsfwritefibers.m │ ├── xffformats.m │ ├── xffinit.m │ ├── xffisobject.m │ ├── xffmakeobject.m │ ├── xffmethods.m │ ├── xffnewcont.m │ └── xffrequestfile.m ├── subsasgn.m ├── subsref.m └── xff.m ├── @xfigure ├── any2ascii.m ├── delete.m ├── disp.m ├── doubleclick.m ├── fieldnames.m ├── findobject.m ├── getprop.m ├── isvalidxfigure.m ├── methods.m ├── mlhandle.m ├── mstring.m ├── private │ ├── addbarbutton.m │ ├── addbarplot.m │ ├── addstring.m │ ├── adduicontextmenu.m │ ├── adduicontrol.m │ ├── adduimenu.m │ ├── bringtofront.m │ ├── childpositions.m │ ├── createfigure.m │ ├── createfigurefromfile.m │ ├── deleteallfigures.m │ ├── docallback.m │ ├── findmlparent.m │ ├── getcontext.m │ ├── i_loadfield.m │ ├── i_updatefield.m │ ├── isactive.m │ ├── isenabled.m │ ├── isvisible.m │ ├── loadfields.m │ ├── loadprops.m │ ├── lookupfields.m │ ├── makeostruct.m │ ├── mdelete.m │ ├── menutext.m │ ├── mmove.m │ ├── msize.m │ ├── mstring.m │ ├── parentobject.m │ ├── progress.m │ ├── radiogroups.m │ ├── radiogroupsetone.m │ ├── redraw.m │ ├── redrawfig.m │ ├── refresh.m │ ├── savefields.m │ ├── setbarydata.m │ ├── setcontext.m │ ├── setgroupenabled.m │ ├── setgroupvisible.m │ ├── showpage.m │ ├── slidegroupxy.m │ ├── tagstruct.m │ ├── updatefield.m │ ├── updatefields.m │ ├── value.m │ ├── xclick.m │ ├── xfiggc.m │ └── xfiginit.m ├── resize.m ├── rgroupclick.m ├── setprop.m ├── subsasgn.m ├── subsref.m └── xfigure.m ├── @xini ├── display.m ├── fieldnames.m ├── isfield.m ├── isstruct.m ├── methods.m ├── subsasgn.m ├── subsref.m └── xini.m ├── @xprogress ├── closebar.m ├── subsasgn.m ├── subsref.m └── xprogress.m ├── BVQXfile.m ├── CHANGELOG.TXT ├── Contents.m ├── LICENSE.TXT ├── README.MD ├── README.html ├── TODO.TXT ├── _core ├── config │ ├── ancova.ini │ ├── colin27fileorder.txt │ ├── freesurfer.ini │ ├── history.txt │ ├── job.ini │ ├── neuroelf.ini │ ├── neuroelf_clean.ini │ ├── spmx_prepro.ini │ ├── study.ini │ └── xff.ini ├── dicom │ ├── OFFIS │ │ ├── COPYRIGHT │ │ └── dicom.dic │ ├── Philips_Achieva │ │ └── dicom.dic │ ├── Philips_Intera │ │ └── dicom.dic │ └── combined.lst ├── fonts │ ├── calibri.mat │ ├── garamond.mat │ ├── harrington.mat │ └── helvetica.mat ├── formats │ ├── ACQ.bff │ ├── ADS.tff │ ├── AMR.bff │ ├── ATD.tff │ ├── AVA.bff │ ├── AVG.tff │ ├── AVGD.tff │ ├── AVGT.tff │ ├── BSA.tff │ ├── BVX.bff │ ├── CCC.bff │ ├── CDD.tff │ ├── CMP.bff │ ├── COV.tff │ ├── CPS.tff │ ├── CTC.bff │ ├── CTR.tff │ ├── CVX.bff │ ├── CZI.bff │ ├── DCM.bff │ ├── DDT.bff │ ├── DMR.tff │ ├── DTA.bff │ ├── DTSF.bff │ ├── DWI.bff │ ├── EIG.bff │ ├── EPF.tff │ ├── FBR.bff │ ├── FBRA.tff │ ├── FCS.bff │ ├── FDP.tff │ ├── FIF.bff │ ├── FMR.tff │ ├── FSBF.bff │ ├── FSMF.bff │ ├── G2G.bff │ ├── GAL.tff │ ├── GLM.bff │ ├── GRAD.tff │ ├── GRB.tff │ ├── HDR.bff │ ├── HEAD.tff │ ├── HEDS.bff │ ├── IDF._bff_ │ ├── MAP.bff │ ├── MAT.bff │ ├── MDM.tff │ ├── MGH.bff │ ├── MSK.bff │ ├── MTC.bff │ ├── MVA.tff │ ├── MVP.tff │ ├── NLF.bff │ ├── NTT.bff │ ├── OLT.tff │ ├── PFS.bff │ ├── PLP.tff │ ├── PLYA.tff │ ├── PMP.bff │ ├── POI.tff │ ├── POID.tff │ ├── POS.tff │ ├── PRT.tff │ ├── RDA.bff │ ├── ROID.tff │ ├── ROOT.bff │ ├── SASC.tff │ ├── SDM.tff │ ├── SFH.tff │ ├── SMP.bff │ ├── SPSS.bff │ ├── SRF.bff │ ├── SSM.bff │ ├── STC.bff │ ├── T2K.bff │ ├── TAL.tff │ ├── TAR.bff │ ├── TDMC.tff │ ├── TFD.bff │ ├── TMV.tff │ ├── TOM.bff │ ├── TRF.tff │ ├── TRK.bff │ ├── TSM.bff │ ├── TVL.bff │ ├── UFF.tff │ ├── VDW.bff │ ├── VGD.tff │ ├── VMP.bff │ ├── VMR.bff │ ├── VMV.bff │ ├── VOI.tff │ ├── VOID.tff │ ├── VOIL.tff │ ├── VOM.tff │ ├── VTC.bff │ ├── VTK.bff │ ├── VVD.tff │ ├── VWP.tff │ └── WAV.bff ├── icons │ ├── -1.tif │ ├── 0.tif │ ├── 1.tif │ ├── and.tif │ ├── atl.tif │ ├── ava.tif │ ├── back.tif │ ├── balance.tif │ ├── bars.tif │ ├── bordq.tif │ ├── c.tif │ ├── cb.tif │ ├── chair.tif │ ├── cor.tif │ ├── ddown.tif │ ├── disk.tif │ ├── down.tif │ ├── dup.tif │ ├── ellipse.tif │ ├── f.tif │ ├── flood.tif │ ├── folder.tif │ ├── gotor.tif │ ├── hdown.tif │ ├── hmesh.tif │ ├── hup.tif │ ├── ico.tif │ ├── info.tif │ ├── invmsk.tif │ ├── isrf.tif │ ├── ixx.tif │ ├── left.tif │ ├── link.tif │ ├── maxi.tif │ ├── mdisk.tif │ ├── mini.tif │ ├── minus.tif │ ├── mroi.tif │ ├── mskvmr.tif │ ├── msrf.tif │ ├── nsph.tif │ ├── or.tif │ ├── ortho.tif │ ├── paint.tif │ ├── paint3.tif │ ├── paintu.tif │ ├── paren.tif │ ├── persp.tif │ ├── plot.tif │ ├── plus.tif │ ├── props.tif │ ├── reload.tif │ ├── remote.tif │ ├── rend.tif │ ├── right.tif │ ├── roi.tif │ ├── sag.tif │ ├── sct.tif │ ├── sigma.tif │ ├── smooa.tif │ ├── smoob.tif │ ├── smoos.tif │ ├── smoost.tif │ ├── smp.tif │ ├── sphere.tif │ ├── ssrf.tif │ ├── stop.tif │ ├── surf.tif │ ├── table.tif │ ├── tick.tif │ ├── tra.tif │ ├── trans.tif │ ├── trash.tif │ ├── ulay.tif │ ├── undock.tif │ ├── up.tif │ ├── v16.tif │ ├── xpand.tif │ ├── xparen.tif │ ├── xval.tif │ └── zoom.tif ├── lut │ ├── Standard.olt │ ├── Standard_extended.olt │ ├── cool.olt │ ├── fullspec_extended.olt │ ├── grey.olt │ ├── hot.olt │ ├── matlab_hot.olt │ ├── matlab_hot_extended.olt │ ├── matlab_winter.olt │ ├── polar_left_hemi_red_gradient.olt │ ├── polar_right_hemi_red_gradient.olt │ ├── prob_map_blue.olt │ ├── prob_map_green_1.olt │ ├── prob_map_green_2.olt │ ├── prob_map_green_circular.olt │ ├── prob_map_red.olt │ ├── reversed.olt │ ├── reversed_extended.olt │ ├── thickness_1.olt │ ├── thickness_2.olt │ ├── thickness_3.olt │ └── tom_48_gamut.olt ├── splash │ ├── curve.jpg │ ├── render.jpg │ ├── shen.jpg │ ├── slice.jpg │ ├── surf.jpg │ ├── text1.png │ ├── text2.jpg │ ├── text3.jpg │ └── text4.jpg └── tfg │ ├── colorpicker.tfg │ ├── console.tfg │ ├── heartbeats_cleanup.tfg │ ├── importrfxglmfromspms.tfg │ ├── ne_audioplayer.tfg │ ├── ne_averagenii.tfg │ ├── ne_fbrowse.tfg │ ├── ne_glmancova.tfg │ ├── ne_glmbetaplot.tfg │ ├── ne_glmcontrasts.tfg │ ├── ne_imagemixer.tfg │ ├── ne_imagesat.tfg │ ├── ne_mdmcondavg.tfg │ ├── ne_mdmconfig.tfg │ ├── ne_mkda.tfg │ ├── ne_physio.tfg │ ├── ne_render.tfg │ ├── ne_rfxmediation.tfg │ ├── ne_satellite.tfg │ ├── ne_surfmontage.tfg │ ├── ne_tcplot.tfg │ ├── ne_vismontage.tfg │ ├── neuroelf.tfg │ ├── plotcurves.tfg │ ├── renamedicom.tfg │ ├── setorient.tfg │ ├── splash.tfg │ ├── spmx_preprojobs.tfg │ └── tdclient.tfg ├── _files ├── _todo │ ├── IL │ │ ├── Anneal_Logit.m │ │ ├── Det_Logit.m │ │ ├── Example.m │ │ ├── Example2_noise_var.m │ │ ├── Fit_Canonical_HRF.m │ │ ├── Fit_Logit.m │ │ ├── Fit_sFIR.m │ │ ├── Get_Logit.m │ │ ├── Get_parameters_Logit.m │ │ ├── Inverse_Logit_Tool_Instructions.rtf │ │ ├── PowerLoss.m │ │ ├── ResidScan.m │ │ ├── ScanSim4.m │ │ ├── cost.m │ │ ├── cost2.m │ │ ├── dilogit_dt2.m │ │ ├── get_parameters2.m │ │ ├── ilogit.m │ │ ├── markovrw.png │ │ └── timecourse.mat │ ├── aoslst │ │ ├── AOSLevelsetSegmentationToolboxM │ │ │ ├── Readme.txt │ │ │ ├── ac_ChanVese_model.m │ │ │ ├── ac_GAC_model.m │ │ │ ├── ac_SDF_2D.m │ │ │ ├── ac_curvature_flow_AOS.m │ │ │ ├── ac_div_AOS.m │ │ │ ├── ac_gaussian_kernel.m │ │ │ ├── ac_gradient_map.m │ │ │ ├── ac_hybrid_model.m │ │ │ ├── ac_laplacian_AOS.m │ │ │ ├── ac_linear_diffusion_AOS.m │ │ │ ├── ac_reinit.m │ │ │ ├── data │ │ │ │ ├── europe_night.jpg │ │ │ │ └── shou.jpg │ │ │ ├── mex │ │ │ │ ├── BinaryHeap.h │ │ │ │ ├── ac_distance_transform_3d.cpp │ │ │ │ ├── ac_div_AOS_3D_dll.cpp │ │ │ │ ├── ac_linear_diffusion_AOS_2D_dll.cpp │ │ │ │ ├── ac_linear_diffusion_AOS_3D_dll.cpp │ │ │ │ ├── ac_tridiagonal_Thomas_dll.cpp │ │ │ │ ├── compile_mex_codes.m │ │ │ │ └── zy_binary_boundary_detection.c │ │ │ ├── private │ │ │ │ ├── ac_distance_transform_3d.mexmaci64 │ │ │ │ ├── ac_div_AOS_1D.m │ │ │ │ ├── ac_div_AOS_2D.m │ │ │ │ ├── ac_div_AOS_3D.m │ │ │ │ ├── ac_div_AOS_3D_dll.mexmaci64 │ │ │ │ ├── ac_linear_diffusion_AOS_2D_dll.mexmaci64 │ │ │ │ ├── ac_linear_diffusion_AOS_3D_dll.mexmaci64 │ │ │ │ ├── ac_tridiagonal_Thomas.m │ │ │ │ ├── ac_tridiagonal_Thomas_dll.mexmaci64 │ │ │ │ ├── zy_binary_boundary_detection.mexmaci64 │ │ │ │ └── zy_extract_pt_from_contours.m │ │ │ ├── test_ChanVese_model_3d.m │ │ │ ├── test_hybrid_model_3d.m │ │ │ └── zy_plot_contours.m │ │ └── license.txt │ ├── brain_rebox.m │ ├── dartel_create_template1mm_7its.mat │ ├── dartel_import_1mm.mat │ ├── dtiprocess.sh │ ├── flexinterpnw.c │ ├── flink │ │ ├── ezSPM_Figure.m │ │ ├── ezSPM_Preprocess.fln │ │ ├── ezSPM_Preprocess.tfg │ │ ├── ezSPM_SPMdefaults.ini │ │ └── ezSPM_epipp.ini │ ├── fmristat │ │ ├── BrikInfo.m │ │ ├── BrikInfo_SectionValue.m │ │ ├── XC.m │ │ ├── blob_brain.m │ │ ├── conf_region.m │ │ ├── conjunction.m │ │ ├── dlm.m │ │ ├── efficiency.m │ │ ├── example.m │ │ ├── example_afni.m │ │ ├── example_nifti.m │ │ ├── example_pet.m │ │ ├── extract.m │ │ ├── fdr_threshold.m │ │ ├── fileparts2.m │ │ ├── fmri_interp.m │ │ ├── fmri_mask_thresh.m │ │ ├── fmridesign.m │ │ ├── fmrilm.m │ │ ├── fmris_read_afni.m │ │ ├── fmris_read_analyze.m │ │ ├── fmris_read_image.m │ │ ├── fmris_read_minc.m │ │ ├── fmris_read_nifti.m │ │ ├── fmris_write_afni.m │ │ ├── fmris_write_analyze.m │ │ ├── fmris_write_image.m │ │ ├── fmris_write_minc.m │ │ ├── fmris_write_nifti.m │ │ ├── gauss_blur.m │ │ ├── glass_brain.m │ │ ├── intrinsicvol.m │ │ ├── locmax.m │ │ ├── mask_mesh.m │ │ ├── mask_resels.m │ │ ├── mask_vol.m │ │ ├── math_vol.m │ │ ├── mesh_tet.m │ │ ├── multistat.m │ │ ├── normalize.m │ │ ├── pca_image.m │ │ ├── plot_vol.m │ │ ├── spectral.m │ │ ├── stat_summary.m │ │ ├── stat_threshold.m │ │ ├── tet_curv.m │ │ ├── view_slices.m │ │ ├── view_slices2.m │ │ └── vol2exp.m │ ├── imageedit.tfg │ ├── relabelnulltest.m │ ├── renderpatch │ │ ├── example1_texture.m │ │ ├── example2_isosurface.m │ │ ├── example3_shadow.m │ │ ├── lena.jpg │ │ ├── license.txt │ │ ├── orig │ │ │ ├── example1_texture.m │ │ │ ├── example2_isosurface.m │ │ │ ├── example3_shadow.m │ │ │ ├── lena.jpg │ │ │ ├── license.txt │ │ │ ├── patchnormals.m │ │ │ ├── patchnormals_double.c │ │ │ ├── patchnormals_double.m │ │ │ ├── patchshadowvolume.cpp │ │ │ ├── patchshadowvolume.m │ │ │ ├── read_wobj.m │ │ │ ├── rendergui.fig │ │ │ ├── rendergui.m │ │ │ ├── renderpatch.cpp │ │ │ ├── renderpatch.m │ │ │ ├── renderpatch_face.cpp │ │ │ ├── renderpatch_fragment.cpp │ │ │ ├── renderpatch_mesh.cpp │ │ │ ├── renderpatch_renderimage.cpp │ │ │ ├── renderpatch_scene.cpp │ │ │ ├── renderpatch_shading.cpp │ │ │ ├── renderpatch_texture.cpp │ │ │ ├── renderpatch_transformation.cpp │ │ │ ├── renderpatch_vertice.cpp │ │ │ ├── sphere.mat │ │ │ └── transformmatrix.m │ │ ├── patchnormals.m │ │ ├── patchnormals_double.c │ │ ├── patchnormals_double.m │ │ ├── patchnormals_double.mexmaci64 │ │ ├── patchshadowvolume.cpp │ │ ├── patchshadowvolume.m │ │ ├── patchshadowvolume.mexmaci64 │ │ ├── read_wobj.m │ │ ├── rendergui.fig │ │ ├── rendergui.m │ │ ├── renderpatch.cpp │ │ ├── renderpatch.m │ │ ├── renderpatch.mexmaci64 │ │ ├── renderpatch_face.cpp │ │ ├── renderpatch_fragment.cpp │ │ ├── renderpatch_mesh.cpp │ │ ├── renderpatch_renderimage.cpp │ │ ├── renderpatch_scene.cpp │ │ ├── renderpatch_shading.cpp │ │ ├── renderpatch_texture.cpp │ │ ├── renderpatch_transformation.cpp │ │ ├── renderpatch_vertice.cpp │ │ ├── sphere.mat │ │ └── transformmatrix.m │ ├── smooth_coreg_segment.mat │ └── smooth_coreg_segment_brainextract.mat ├── cache │ └── PLEASE_DO_NOT_DELETE_THIS_FOLDER ├── colin │ ├── ACPC.tal │ ├── ACPC.trf │ ├── afni_inv_sn.mat │ ├── afni_sn.mat │ ├── brain_seg_inv_sn.mat │ ├── brain_seg_sn.mat │ ├── brainmask.mat │ ├── colin.hdr │ ├── colin.img │ ├── flatmap.mat │ ├── seg_05mm.mat │ ├── seg_inv_sn.mat │ ├── seg_sn.mat │ ├── sph.mat │ └── subcortical.nii ├── contrib │ ├── JSilvers_func_conn_RT.m │ ├── LSTransform.m │ ├── MakeFMR_SanityCheck.m │ ├── SVM_classify_ROI.m │ ├── alphasim_table.m │ ├── checkglobalsignals.m │ ├── combine_voi_matfiles.m │ ├── convert_to_ML14.sh │ ├── coordset_clusterscatter.m │ ├── create36Pmodels.m │ ├── create_age_h_figure.m │ ├── create_block_onsets.m │ ├── create_er_onsets.m │ ├── createmotionprts.m │ ├── createprtsfrommats.m │ ├── crop_to_n_slices.m │ ├── czi_countcells.m │ ├── darpa_createonsets.m │ ├── dartel │ │ ├── brain_rebox.m │ │ ├── dartel_create_template1mm_7its.mat │ │ ├── dartel_create_template_7its.mat │ │ ├── dartel_import_1mm.mat │ │ ├── dartel_import_and_run.mat │ │ ├── dartel_import_template_onmwm.mat │ │ ├── dartel_warp_only.mat │ │ ├── dartel_warp_to_MNI_manysub_fewimg.mat │ │ ├── dartel_warp_to_MNI_manysub_fewimg_1_5mm.mat │ │ ├── extract_brain.m │ │ ├── segment_only.mat │ │ ├── smooth_coreg_segment.mat │ │ ├── smooth_coreg_segment_brainextract.mat │ │ └── smooth_coreg_segment_brainextract_rawonly.mat │ ├── dcm2nii.a64 │ ├── dcm2nii.exe │ ├── dcm2nii.glx │ ├── dcm2nii.osx │ ├── expefficiency.m │ ├── extract_tc_from_surf.m │ ├── extractfplists.m │ ├── facultypairings.m │ ├── fd_motionoutliers.m │ ├── fibrosis_select.m │ ├── filtertest.m │ ├── fpsamples │ │ ├── CalTech.txt │ │ ├── Columbia.txt │ │ ├── Harvard.txt │ │ ├── MIT.txt │ │ ├── Princeton.txt │ │ ├── Stanford.txt │ │ ├── UCL.txt │ │ └── UCSF.txt │ ├── gpumbrot.m │ ├── gpumbrot_elem.m │ ├── hrfboost_test.m │ ├── icon16.nii │ ├── jp_grayplot.m │ ├── kids_import_cornell_phase2.m │ ├── kmedioids.m │ ├── kmedoids.m │ ├── lfw_forced_choice.m │ ├── lfw_read_faces.m │ ├── libSVM │ │ ├── COPYRIGHT │ │ ├── FAQ.html │ │ ├── README │ │ ├── README.matlab │ │ ├── heart_scale │ │ └── heart_scale.mat │ ├── matlab.mat │ ├── mediation_exampledata.mat │ ├── meta_coords_reapp_100511.zip │ ├── mexa64_yeti.zip │ ├── modelcomp_regression.m │ ├── mp3readwrite │ │ ├── Jazz_nat.mp3 │ │ ├── Jazz_sw.mp3 │ │ ├── lame.exe │ │ ├── lame.glnx86 │ │ ├── lame.maci64 │ │ ├── lame_enc.dll │ │ ├── mp3info.exe │ │ ├── mp3info.glnx86 │ │ ├── mp3info.maci64 │ │ ├── mpg123.exe │ │ ├── mpg123.glnx86 │ │ ├── mpg123.maci64 │ │ ├── sws │ │ │ ├── AudioFiles │ │ │ │ ├── BIRD.WAV │ │ │ │ └── WOOD.WAV │ │ │ ├── Matlab.SWS.Documentation │ │ │ ├── STKfiles │ │ │ │ ├── BINGO.STK │ │ │ │ └── WHERE.STK │ │ │ ├── SWIfiles │ │ │ │ ├── BINGO.SWI │ │ │ │ ├── BOOKB.SWI │ │ │ │ ├── DRIP.SWI │ │ │ │ ├── WHERE.SWI │ │ │ │ ├── WOOD.SWI │ │ │ │ └── nurse_whis.swi │ │ │ ├── SWXfiles │ │ │ │ ├── BINGO.SWX │ │ │ │ ├── BOOK.SWX │ │ │ │ └── LEAK.SWX │ │ │ ├── auwrite2.m │ │ │ ├── ave_freqandamp.m │ │ │ ├── createharmonic.m │ │ │ ├── display_all.m │ │ │ ├── display_win.m │ │ │ ├── displayparameters.m │ │ │ ├── fileext.m │ │ │ ├── filetype.mex │ │ │ ├── greps.m │ │ │ ├── inpread.m │ │ │ ├── lpca2frq.m │ │ │ ├── lpcfit.m │ │ │ ├── mindiff.m │ │ │ ├── msecs2samps.m │ │ │ ├── normsound.m │ │ │ ├── pad.m │ │ │ ├── parseline.m │ │ │ ├── praat2swx.m │ │ │ ├── rampsound.m │ │ │ ├── readstr.m │ │ │ ├── samps2msecs.m │ │ │ ├── setamp.m │ │ │ ├── setfreq.m │ │ │ ├── slinterp.m │ │ │ ├── stk2swx.m │ │ │ ├── str2.m │ │ │ ├── swiaddition.m │ │ │ ├── swiinput.m │ │ │ ├── swimultiply.m │ │ │ ├── swiread.m │ │ │ ├── swiwrite.m │ │ │ ├── sws.m │ │ │ ├── sws_gui.m │ │ │ ├── sws_help.m │ │ │ ├── swsmodel.m │ │ │ ├── swsmodel2.m │ │ │ ├── swxwrite.m │ │ │ ├── synthtrax.m │ │ │ ├── tall.m │ │ │ ├── wavwrite2.m │ │ │ ├── xcorr.m │ │ │ └── zero2nan.m │ │ └── wregress.m │ ├── mrp_protosplit.m │ ├── multi_subject_mdm_glm_joch082014.m │ ├── ne_remote │ │ ├── cb.js │ │ ├── cf.js │ │ ├── d3.js │ │ ├── icons │ │ │ ├── -1.png │ │ │ ├── 0.png │ │ │ ├── 1.png │ │ │ ├── and.png │ │ │ ├── back.png │ │ │ ├── balance.png │ │ │ ├── bars.png │ │ │ ├── c.png │ │ │ ├── cb.png │ │ │ ├── chair.png │ │ │ ├── cor.png │ │ │ ├── ddown.png │ │ │ ├── disk.png │ │ │ ├── down.png │ │ │ ├── dup.png │ │ │ ├── ellipse.png │ │ │ ├── f.png │ │ │ ├── flood.png │ │ │ ├── folder.png │ │ │ ├── gotor.png │ │ │ ├── hdown.png │ │ │ ├── hup.png │ │ │ ├── info.png │ │ │ ├── invmsk.png │ │ │ ├── ixx.png │ │ │ ├── left.png │ │ │ ├── link.png │ │ │ ├── maxi.png │ │ │ ├── mini.png │ │ │ ├── minus.png │ │ │ ├── mroi.png │ │ │ ├── mskvmr.png │ │ │ ├── or.png │ │ │ ├── ortho.png │ │ │ ├── paint.png │ │ │ ├── paint3.png │ │ │ ├── paintu.png │ │ │ ├── paren.png │ │ │ ├── persp.png │ │ │ ├── plot.png │ │ │ ├── plus.png │ │ │ ├── props.png │ │ │ ├── reload.png │ │ │ ├── remote.png │ │ │ ├── rend.png │ │ │ ├── right.png │ │ │ ├── roi.png │ │ │ ├── sag.png │ │ │ ├── sct.png │ │ │ ├── smooa.png │ │ │ ├── smoos.png │ │ │ ├── smp.png │ │ │ ├── sphere.png │ │ │ ├── surf.png │ │ │ ├── table.png │ │ │ ├── tick.png │ │ │ ├── tra.png │ │ │ ├── trans.png │ │ │ ├── trash.png │ │ │ ├── ulay.png │ │ │ ├── undock.png │ │ │ ├── up.png │ │ │ ├── xpand.png │ │ │ ├── xparen.png │ │ │ ├── xval.png │ │ │ └── zoom.png │ │ ├── images │ │ │ └── timeout.png │ │ ├── index.php │ │ ├── jq.js │ │ ├── jqf.js │ │ ├── jqm.css │ │ ├── jqm.js │ │ ├── jqmd.css │ │ ├── jqmd.js │ │ ├── jqmm.css │ │ ├── jqmm.js │ │ ├── jqmts.js │ │ ├── login.hti │ │ ├── login.jpg │ │ ├── loginfailed.hti │ │ ├── ne_remote.css │ │ ├── ne_remote.hti │ │ ├── ne_remote_client.js │ │ ├── ne_remote_login.css │ │ ├── ne_remote_menu.css │ │ ├── ne_remote_menu_sample.hti │ │ ├── ne_remote_openfile.hti │ │ └── ne_remote_server.js │ ├── neuroelf_initremote.m │ ├── neurosynth_download.m │ ├── npsmoothest.m │ ├── nyspi_recon_mux_gpuArray.m │ ├── phc_funcprocess.m │ ├── predrelpower.m │ ├── reapp_alc_prts.m │ ├── renamevtcs_withruns.m │ ├── replace_catch_ne_eo.sh │ ├── rsa_test.m │ ├── sample.rdata │ ├── screenshots.m │ ├── searchlight │ │ ├── PT_glm_searchlight.m │ │ ├── PT_glm_searchlight_combine.m │ │ ├── PT_glm_searchlight_job.sh │ │ └── PT_glm_searchlight_run.m │ ├── smp_gradient.m │ ├── sobc_convert_nifti_to_float32.m │ ├── sobc_convert_to_nii.m │ ├── sobc_rename_nifti_to_bids.m │ ├── srfmovie.m │ ├── srfmovie2.m │ ├── test_AR2.m │ ├── testjitters.m │ ├── testwordbrain.m │ ├── transio_OPtest.m │ ├── verbs2_ROI_classify.m │ ├── winterp_test.m │ ├── wordbrain_list.txt │ ├── wordbrainoldprob.m │ ├── wrfxtest.m │ └── xnat_fmriquality.m ├── freesurfer │ └── FreeSurferColorLUT.txt ├── manual │ ├── NE_VOI_buttons.png │ ├── NE_conman_GLM.png │ ├── NE_conman_areas.png │ ├── NE_draw_buttons1.png │ ├── NE_draw_buttons2.png │ ├── NE_draw_buttons3.png │ ├── NE_draw_buttons4.png │ ├── NE_draw_buttonsu.png │ ├── NE_gui_areas.png │ ├── NE_gui_empty.png │ ├── NE_spmx_preprojobs.png │ ├── NE_spmx_preprojobs_areas.png │ ├── NE_stats_buttons.png │ └── NE_stats_buttons2.png ├── masks │ ├── colin_brain_ICBMnorm_brain2mm.msk │ ├── colin_brain_ICBMnorm_brain3mm.msk │ ├── colin_brain_ICBMnorm_csf2mm.msk │ ├── colin_brain_ICBMnorm_csf3mm.msk │ ├── colin_brain_ICBMnorm_csfx+white_e1_3mm.msk │ ├── colin_brain_ICBMnorm_csfx2mm.msk │ ├── colin_brain_ICBMnorm_csfx3mm.msk │ ├── colin_brain_ICBMnorm_gray2mm.msk │ ├── colin_brain_ICBMnorm_gray3mm.msk │ ├── colin_brain_ICBMnorm_white2mm.msk │ ├── colin_brain_ICBMnorm_white3mm.msk │ ├── colin_brain_ICBMnorm_white_e1_3mm.msk │ └── colin_brain_ICBMnorm_wholebrain3mm.msk ├── neurosynth │ ├── URL.txt │ ├── rawdata │ │ └── PLEASE_DO_NOT_DELETE_THIS_FOLDER │ ├── rterms.txt │ ├── terms.txt │ ├── terms │ │ └── PLEASE_DO_NOT_DELETE_THIS_FOLDER │ └── terms_v05.txt ├── pines │ ├── PINES_PCR.nii.gz │ └── URL.txt ├── shenparcel │ ├── URL.txt │ ├── external_validation_share.m │ ├── shen_1mm_268_parcellation.nii.gz │ └── shen_268_parcellation_networklabels.csv ├── spm │ ├── URL.txt │ ├── dartel │ │ ├── dartel2.c │ │ ├── dartel2.m │ │ ├── dartel3.c │ │ ├── dartel3.m │ │ ├── diffeo2d.c │ │ ├── diffeo2d.h │ │ ├── diffeo3d.c │ │ ├── diffeo3d.h │ │ ├── make.m │ │ ├── optim1.c │ │ ├── optim1.h │ │ ├── optim1.m │ │ ├── optim1_mex.c │ │ ├── optimN.c │ │ ├── optimN.h │ │ ├── optimN.m │ │ ├── optimN_mex.c │ │ ├── optimNn.m │ │ ├── optimizer2d.c │ │ ├── optimizer2d.h │ │ ├── optimizer2d_mex.c │ │ ├── optimizer3d.c │ │ ├── optimizer3d.h │ │ ├── optimizer3d_mex.c │ │ ├── spm_dartel_dotprods.m │ │ ├── spm_dartel_import.m │ │ ├── spm_dartel_integrate.m │ │ ├── spm_dartel_invnorm.m │ │ ├── spm_dartel_jacobian.m │ │ ├── spm_dartel_kernel.m │ │ ├── spm_dartel_norm.m │ │ ├── spm_dartel_norm_fun.m │ │ ├── spm_dartel_resids.m │ │ ├── spm_dartel_smooth.m │ │ ├── spm_dartel_template.m │ │ ├── spm_dartel_warp.m │ │ ├── spm_klaff.m │ │ ├── tbx_cfg_dartel.m │ │ └── tbx_def_dartel.m │ ├── smoothkernmax.mat │ ├── spm12_normest.mat │ ├── spm12_writesn.mat │ ├── spm5_coreg.mat │ ├── spm5_dicomimport_job.mat │ ├── spm5_fmriestim.mat │ ├── spm5_fmrimodel.mat │ ├── spm5_mediation.mat │ ├── spm5_normest.mat │ ├── spm5_prepro.mat │ ├── spm5_segment.mat │ ├── spm5_writesn.mat │ ├── spm8_MIP.mat │ ├── spm8_coreg.mat │ ├── spm8_dartel_create_template.mat │ ├── spm8_dartel_import.mat │ ├── spm8_dartel_mni_normalize_anat.mat │ ├── spm8_dartel_template.mat │ ├── spm8_dartel_warp_to_template.mat │ ├── spm8_dicomimport_job.mat │ ├── spm8_extract.mat │ ├── spm8_fmrimodel.mat │ ├── spm8_icbmnorm_colin_job.mat │ ├── spm8_newseg.mat │ ├── spm8_newsegment.mat │ ├── spm8_normest.mat │ ├── spm8_prepro.mat │ ├── spm8_rfx_mlr_model.mat │ ├── spm8_rfx_ost.mat │ ├── spm8_segment.mat │ └── spm8_segment_colin_job.mat ├── srf │ ├── bvsph.mat │ ├── fssph.mat │ ├── fssph6.tsm │ ├── fssph7.tsm │ ├── unitcube.srf │ ├── unitcylinder4280.srf │ ├── unitsphere320.srf │ ├── unittridown.srf │ └── unittriup.srf ├── tal │ ├── URL.txt │ ├── talairach.COPYRIGHT │ ├── talairach.nii │ ├── talairach_seg_inv_sn.mat │ └── talairach_seg_sn.mat └── vessel │ ├── URL.txt │ └── VesselDensityMR.nii.gz ├── _todo └── @xff │ └── private │ ├── aft_ConvertToNLF.m │ ├── aft_RSA.m │ ├── aft_TempMahalanobis.m │ ├── dmr_Write4DNifti.m │ ├── fmr_Preprocess.m │ ├── fmr_Write4DNifti.m │ ├── fmr_WriteAnalyzeSeries.m │ ├── fmr_WriteAnalyzeVol.m │ ├── glm_PSCMaps.m │ ├── glm_RFX_StatsMap.m │ ├── glm_SingleTrialAnalysis.m │ ├── glm_SingleTrialSVM.m │ ├── hdr_Dyn3DToDMR.m │ ├── map_WriteAnalyzeVol.m │ ├── mdm_GSRSquared.m │ ├── nlf_CoordinateFrame.m │ ├── ntt_ERATimeCourse.m │ ├── smp_ComputeFormulaOrig.m │ ├── vmp_AddConjunctionMap.m │ ├── vmp_ComputeFormulaOrig.m │ ├── vmr_LoResRescale.m │ ├── vmr_MarkWhiteMatter.m │ ├── vmr_OverlaySRF.m │ ├── vmr_OverlayVMP.m │ ├── vtc_Write4DNifti.m │ └── vtc_WriteAnalyzeSeries.m ├── any2ascii.m ├── clearxffobjects.m ├── dunzip.m ├── dzip.m ├── hxdouble.m ├── hxsingle.m ├── isBVQXfile.m ├── isabsolute.m ├── isrealvarname.m ├── istransio.m ├── isxff.m ├── isxfigure.m ├── isxini.m ├── ne_eo.m ├── neuroelf_build.m ├── neuroelf_file.m ├── neuroelf_gui.m ├── neuroelf_lasterr.m ├── neuroelf_path.m ├── neuroelf_setup.m ├── neuroelf_version.m ├── sprintfbx.m ├── xfigurecallback.m ├── xstruct.m ├── xsubsasgn.m └── xsubsref.m /.gitignore: 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| o = xfigsngl.contextobject; 8 | -------------------------------------------------------------------------------- /@xfigure/private/isenabled.m: -------------------------------------------------------------------------------- 1 | function tf = isenabled(xo) 2 | 3 | % check 4 | if numel(xo) ~= 1 || ~any((2:4) == xo.T) 5 | error('neuroelf:xfigure:invalidObject', 'Invalid object for IsEnabled.'); 6 | end 7 | 8 | % default: true 9 | tf = true; 10 | try 11 | 12 | % override 13 | if ~strcmpi(get(xo.H, 'Enable'), 'on') 14 | tf = false; 15 | end 16 | catch xfigerror 17 | neuroelf_lasterr(xfigerror); 18 | end 19 | -------------------------------------------------------------------------------- /@xfigure/private/isvisible.m: -------------------------------------------------------------------------------- 1 | function tf = isvisible(xo) 2 | 3 | % check 4 | if numel(xo) ~= 1 || xo.T == 0 5 | error('neuroelf:xfigure:invalidObject', 'Invalid object for IsVisible.'); 6 | end 7 | 8 | tf = true; 9 | try 10 | if ~strcmpi(get(xo.H, 'Visible'), 'on') 11 | tf = false; 12 | end 13 | catch xfigerror 14 | neuroelf_lasterr(xfigerror); 15 | end 16 | -------------------------------------------------------------------------------- /@xfigure/private/loadprops.m: -------------------------------------------------------------------------------- 1 | function p = loadprops(xo) 2 | 3 | % only valid for uicontrol objects 4 | if numel(xo) ~= 1 || xo.T == 0 5 | warning('neuroelf:xfigure:invalidObjectType', 'LoadProps not valid for ROOT object.'); 6 | p = struct; 7 | else 8 | p = xo.X.loadprops; 9 | end 10 | -------------------------------------------------------------------------------- /@xfigure/private/radiogroups.m: -------------------------------------------------------------------------------- 1 | function g = radiogroups(xo) 2 | %XFIGURE::RADIOGROUPS Return the radiogroups (names) for a figure. 3 | % GROUPS = RADIOGROUPS(FIG) returns the list of radio (button) group 4 | % names for figure FIG. 5 | 6 | % only for figures 7 | if numel(xo) ~= 1 || xo.T ~= 1 8 | error('neuroelf:xfigure:invalidObjectType', 'RadioGroups is only valid for figures.'); 9 | end 10 | 11 | % return radio groups 12 | g = xo.X.figprops.rgroups; 13 | -------------------------------------------------------------------------------- /@xfigure/private/redrawfig.m: -------------------------------------------------------------------------------- 1 | function redrawfig(mlh) 2 | %XFIGURE::PRIVATE::REDRAWFIG Internal redraw code to force redraw. 3 | 4 | % allow for errors 5 | try 6 | 7 | % get original color 8 | tcol = get(mlh, 'Color'); 9 | 10 | % set color and immediately reset color 11 | set(mlh, 'Color', (tcol * 0.99 + [0.002, 0.002, 0.002]), 'Color', tcol); 12 | catch xfigerror 13 | neuroelf_lasterr(xfigerror); 14 | end 15 | 16 | % issue drawnow 17 | drawnow; 18 | -------------------------------------------------------------------------------- /@xfigure/private/xfiggc.m: -------------------------------------------------------------------------------- 1 | function xfiggc 2 | %XFIGURE::XFIGGC Garbage collection of XFIGURE class. 3 | 4 | % global reference storage 5 | global xfigmlup xfigsngl xfigures; 6 | 7 | % remove invalid handles (deep check!) 8 | ivh = ~isvalidxfigure(xfigures); 9 | xfigmlup(ivh) = []; 10 | xfigures(ivh) = []; 11 | 12 | % reset garbage collection counter 13 | xfigsngl.gccount = 0; 14 | -------------------------------------------------------------------------------- /TODO.TXT: -------------------------------------------------------------------------------- 1 | This file represents a relatively unordered list of changes and additions that 2 | are yet to be implemented into NeuroElf 3 | 4 | - High priority 5 | 6 | - check aft_SliceToTransimg with alpha settings 7 | 8 | - Mid priority 9 | 10 | - general clean-up of class code 11 | - ND histogram (histcountn) based clustering (compute peak in ND, then compute 12 | distances from peak, select points closest to peak, remove from dataset, repeat) 13 | 14 | -------------------------------------------------------------------------------- /_core/config/history.txt: -------------------------------------------------------------------------------- 1 | neuroelf_gui('undock'); 2 | -------------------------------------------------------------------------------- /_core/dicom/Philips_Achieva/dicom.dic: -------------------------------------------------------------------------------- 1 | # 2 | # Author: Jochen Weber 3 | # 4 | # Purpose: 5 | # This is the Philips specific DICOM data dictionary 6 | # 7 | # Tag VR Name VM Version 8 | # 9 | (0040,0280) ST CommentsOnThePerformedProcedureStep 1 Philips 10 | (2001,100A) SH SliceNumber 1 Philips 11 | (2001,100B) SH SliceOrientation 1 Philips 12 | (2001,1018) UL NumberOfSlices 1 Philips 13 | (2001,101D) UL SubSeriesNumber 1 Philips 14 | # 15 | # EOF 16 | # 17 | -------------------------------------------------------------------------------- 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