├── .Rbuildignore ├── .devcontainer └── devcontainer.json ├── .github ├── .gitignore ├── ISSUE_TEMPLATE │ ├── bug_report.yml │ ├── config.yml │ └── feature_request.yml └── workflows │ ├── rworkflows.yml │ └── rworkflows_static.yml ├── .gitignore ├── DESCRIPTION ├── NAMESPACE ├── NEWS.md ├── R ├── bioc_r_versions.R ├── check_bioc_version.R ├── check_cont.R ├── check_cont_dockerhub.R ├── check_cont_general.R ├── check_cont_ghcr.R ├── check_paths.R ├── check_pkg_name_variants.R ├── check_r_version.R ├── check_refs_names.R ├── check_registry.R ├── check_tags.R ├── codecov_graphs.R ├── conda_export.R ├── conda_installed.R ├── conda_path.R ├── condaenv_exists.R ├── construct_authors.R ├── construct_conda_yml.R ├── construct_cont.R ├── construct_runners.R ├── construct_runners_check_args.R ├── data.R ├── dt_to_desc.R ├── fill_description.R ├── fill_yaml.R ├── get_authors.R ├── get_description.R ├── get_description_manual.R ├── get_description_repo.R ├── get_description_repo_biocpkgtools.R ├── get_github_url_db.R ├── get_github_url_desc.R ├── get_hex.R ├── get_yaml.R ├── gha_python_versions.R ├── infer_biocviews.R ├── infer_deps.R ├── infer_docker_org.R ├── is_default.R ├── is_gha.R ├── is_rstudio.R ├── message_parallel.R ├── messager.R ├── omit_if_default.R ├── parse_version.R ├── preview_yaml.R ├── refs_to_list.R ├── return_yaml.R ├── save_yaml.R ├── set_vignette_index.R ├── stopper.R ├── url_exists.R ├── use_badges.R ├── use_codespace.R ├── use_dockerfile.R ├── use_issue_template.R ├── use_readme.R ├── use_vignette_docker.R ├── use_vignette_getstarted.R └── use_workflow.R ├── README.Rmd ├── README.md ├── action.yml ├── data └── biocpkgtools_db.rda ├── inst ├── CITATION ├── example │ ├── check_rworkflows-merged.yml │ └── rworkflows.yml ├── hex │ ├── hex.png │ └── rworkflows_logo.png ├── rworkflows_1.0.1.pdf └── templates │ ├── Dockerfile │ ├── README.Rmd │ ├── action_split.yml │ ├── bug_report.md │ ├── bug_report.yml │ ├── config.yml │ ├── devcontainer.json │ ├── docker.Rmd │ ├── feature_request.md │ ├── feature_request.yml │ ├── rworkflows_template.yml │ ├── rworkflows_template_static.yml │ └── templateR.Rmd ├── man ├── bioc_r_versions.Rd ├── biocpkgtools_db.Rd ├── check_cont.Rd ├── check_miniconda_args.Rd ├── check_registry.Rd ├── conda_export.Rd ├── construct_authors.Rd ├── construct_conda_yml.Rd ├── construct_cont.Rd ├── construct_runners.Rd ├── dt_to_desc.Rd ├── fill_description.Rd ├── get_authors.Rd ├── get_description.Rd ├── get_description_repo.Rd ├── get_github_url_db.Rd ├── get_hex.Rd ├── gha_python_versions.Rd ├── infer_biocviews.Rd ├── infer_deps.Rd ├── infer_docker_org.Rd ├── is_gha.Rd ├── message_parallel.Rd ├── messager.Rd ├── stopper.Rd ├── use_badges.Rd ├── use_codespace.Rd ├── use_dockerfile.Rd ├── use_issue_template.Rd ├── use_readme.Rd ├── use_vignette_docker.Rd ├── use_vignette_getstarted.Rd └── use_workflow.Rd ├── reports ├── dep_graph_res.rds ├── r_repos_res.rds ├── r_repos_upset.pdf ├── rworkflows_depgraph.html └── rworkflows_depgraph.png ├── tests ├── testthat.R └── testthat │ ├── test-bioc_r_versions.R │ ├── test-check_bioc_version.R │ ├── test-check_cont.R │ ├── test-check_r_version.R │ ├── test-construct_authors.R │ ├── test-construct_conda_yml.R │ ├── test-construct_cont.R │ ├── test-construct_runners.R │ ├── test-dt_to_desc.R │ ├── test-fill_description.R │ ├── test-get_authors.R │ ├── test-get_description.R │ ├── test-get_github_url_db.R │ ├── test-get_github_url_desc.R │ ├── test-get_hex.R │ ├── test-get_yaml.R │ ├── test-gha_python_versions.R │ ├── test-infer_biocviews.R │ ├── test-infer_deps.R │ ├── test-infer_docker_org.R │ ├── test-messager.R │ ├── test-parse_version.R │ ├── test-stopper.R │ ├── test-url_exists.R │ ├── test-use_badges.R │ ├── test-use_codespace.R │ ├── test-use_dockerfile.R │ ├── test-use_issue_template.R │ ├── test-use_readme.R │ ├── test-use_vignette_docker.R │ ├── test-use_vignette_getstarted.R │ └── test-use_workflow.R └── vignettes ├── .gitignore ├── 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