├── .github └── workflows │ └── docs_build_and_deploy.yml ├── .gitignore ├── .pre-commit-config.yaml ├── CONTRIBUTING.md ├── LICENSE ├── README.md └── docs ├── Makefile ├── make.bat ├── requirements.txt └── source ├── _static ├── code-blocks-note.md ├── css │ └── custom.css ├── dark-logo-gatsby.png ├── dark-logo-swc.png ├── dark-logo-ucl.png ├── gin-clipboard.png ├── gin-privacy-settings.png ├── light-logo-gatsby.png ├── light-logo-swc.png ├── light-logo-ucl.png ├── logo_dark.png ├── logo_light.png ├── mermaid_config.json ├── ssh_flowchart_full.mmd ├── ssh_flowchart_full.png ├── ssh_flowchart_unmanaged.mmd ├── ssh_flowchart_unmanaged.png └── swc-wiki-warning.md ├── _templates ├── footer_end.html └── footer_start.html ├── conf.py ├── data_analysis ├── HPC-module-SLEAP.md └── index.md ├── electrophysiology ├── community.md ├── example_pipelines │ ├── examples │ │ ├── README.rst │ │ ├── notes-on-docs-structure.txt │ │ └── sara_mederos.py │ ├── index.md │ └── matlab_examples.rst ├── index.md └── resources.md ├── index.md ├── open_science ├── Data-sharing.md ├── GIN-repositories.md ├── Licensing.md └── index.md └── programming ├── Cookiecutter-cruft.md ├── Mount-ceph-ubuntu-temp.md ├── Mount-ceph-ubuntu.md ├── SLURM-arguments.md ├── SSH-SWC-cluster.md ├── SSH-vscode.md ├── Troubleshooting.md ├── index.md ├── port-fowarding.md └── vscode-with-slurm-job.md /.github/workflows/docs_build_and_deploy.yml: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/neuroinformatics-unit/HowTo/HEAD/.github/workflows/docs_build_and_deploy.yml -------------------------------------------------------------------------------- /.gitignore: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/neuroinformatics-unit/HowTo/HEAD/.gitignore -------------------------------------------------------------------------------- /.pre-commit-config.yaml: 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