├── .gitignore ├── GG-366-FLAIR-2.0mm-8mmFWHM.nii ├── LICENSE ├── README.md ├── TPM4mm.nii ├── Tutorial ├── high_res │ ├── betsct1_unsmooth.nii │ ├── scct_unsmooth.nii │ └── sct1_unsmooth.nii ├── manual.doc └── tutorial │ ├── CTnolesion.nii │ ├── T1.nii │ ├── T2.nii │ ├── lesionT1.nii │ ├── lesionT2.nii │ └── readme.txt ├── clinical_8bit.m ├── clinical_binarize.m ├── clinical_c2h.m ├── clinical_c2h_old.m ├── clinical_cormack.m ├── clinical_ctnorm.m ├── clinical_ctnorm_job.m ├── clinical_delete.m ├── clinical_filedir_exists.m ├── clinical_fix_ge_ct.m ├── clinical_h2c.m ├── clinical_h2c_old.m ├── clinical_lesion_coreg.m ├── clinical_mrnorm.m ├── clinical_mrnorm_job.m ├── clinical_mrnormseg.m ├── clinical_mrnormseg12.m ├── clinical_mrnormseg_job.m ├── clinical_nii2voi.m ├── clinical_rename.m ├── clinical_setorigin.m ├── clinical_smooth.m ├── clinical_smoothmask.m ├── gg-flair-181-asym-8mmFWHM.nii ├── sccsf.nii ├── scct.nii ├── scct_stripped.nii ├── scgrey.nii ├── scwhite.nii ├── spm_2017May09.ps └── tbx_cfg_clinical.m /.gitignore: -------------------------------------------------------------------------------- 1 | .DS_Store 2 | -------------------------------------------------------------------------------- /GG-366-FLAIR-2.0mm-8mmFWHM.nii: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/neurolabusc/Clinical/HEAD/GG-366-FLAIR-2.0mm-8mmFWHM.nii -------------------------------------------------------------------------------- /LICENSE: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/neurolabusc/Clinical/HEAD/LICENSE -------------------------------------------------------------------------------- /README.md: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/neurolabusc/Clinical/HEAD/README.md -------------------------------------------------------------------------------- /TPM4mm.nii: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/neurolabusc/Clinical/HEAD/TPM4mm.nii -------------------------------------------------------------------------------- /Tutorial/high_res/betsct1_unsmooth.nii: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/neurolabusc/Clinical/HEAD/Tutorial/high_res/betsct1_unsmooth.nii -------------------------------------------------------------------------------- /Tutorial/high_res/scct_unsmooth.nii: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/neurolabusc/Clinical/HEAD/Tutorial/high_res/scct_unsmooth.nii -------------------------------------------------------------------------------- /Tutorial/high_res/sct1_unsmooth.nii: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/neurolabusc/Clinical/HEAD/Tutorial/high_res/sct1_unsmooth.nii -------------------------------------------------------------------------------- /Tutorial/manual.doc: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/neurolabusc/Clinical/HEAD/Tutorial/manual.doc -------------------------------------------------------------------------------- /Tutorial/tutorial/CTnolesion.nii: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/neurolabusc/Clinical/HEAD/Tutorial/tutorial/CTnolesion.nii -------------------------------------------------------------------------------- /Tutorial/tutorial/T1.nii: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/neurolabusc/Clinical/HEAD/Tutorial/tutorial/T1.nii -------------------------------------------------------------------------------- /Tutorial/tutorial/T2.nii: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/neurolabusc/Clinical/HEAD/Tutorial/tutorial/T2.nii -------------------------------------------------------------------------------- /Tutorial/tutorial/lesionT1.nii: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/neurolabusc/Clinical/HEAD/Tutorial/tutorial/lesionT1.nii -------------------------------------------------------------------------------- /Tutorial/tutorial/lesionT2.nii: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/neurolabusc/Clinical/HEAD/Tutorial/tutorial/lesionT2.nii -------------------------------------------------------------------------------- /Tutorial/tutorial/readme.txt: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/neurolabusc/Clinical/HEAD/Tutorial/tutorial/readme.txt -------------------------------------------------------------------------------- /clinical_8bit.m: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/neurolabusc/Clinical/HEAD/clinical_8bit.m -------------------------------------------------------------------------------- /clinical_binarize.m: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/neurolabusc/Clinical/HEAD/clinical_binarize.m -------------------------------------------------------------------------------- /clinical_c2h.m: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/neurolabusc/Clinical/HEAD/clinical_c2h.m -------------------------------------------------------------------------------- /clinical_c2h_old.m: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/neurolabusc/Clinical/HEAD/clinical_c2h_old.m -------------------------------------------------------------------------------- /clinical_cormack.m: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/neurolabusc/Clinical/HEAD/clinical_cormack.m -------------------------------------------------------------------------------- /clinical_ctnorm.m: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/neurolabusc/Clinical/HEAD/clinical_ctnorm.m -------------------------------------------------------------------------------- /clinical_ctnorm_job.m: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/neurolabusc/Clinical/HEAD/clinical_ctnorm_job.m -------------------------------------------------------------------------------- /clinical_delete.m: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/neurolabusc/Clinical/HEAD/clinical_delete.m -------------------------------------------------------------------------------- /clinical_filedir_exists.m: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/neurolabusc/Clinical/HEAD/clinical_filedir_exists.m -------------------------------------------------------------------------------- /clinical_fix_ge_ct.m: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/neurolabusc/Clinical/HEAD/clinical_fix_ge_ct.m -------------------------------------------------------------------------------- /clinical_h2c.m: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/neurolabusc/Clinical/HEAD/clinical_h2c.m -------------------------------------------------------------------------------- /clinical_h2c_old.m: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/neurolabusc/Clinical/HEAD/clinical_h2c_old.m -------------------------------------------------------------------------------- /clinical_lesion_coreg.m: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/neurolabusc/Clinical/HEAD/clinical_lesion_coreg.m -------------------------------------------------------------------------------- /clinical_mrnorm.m: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/neurolabusc/Clinical/HEAD/clinical_mrnorm.m -------------------------------------------------------------------------------- /clinical_mrnorm_job.m: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/neurolabusc/Clinical/HEAD/clinical_mrnorm_job.m -------------------------------------------------------------------------------- /clinical_mrnormseg.m: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/neurolabusc/Clinical/HEAD/clinical_mrnormseg.m -------------------------------------------------------------------------------- /clinical_mrnormseg12.m: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/neurolabusc/Clinical/HEAD/clinical_mrnormseg12.m -------------------------------------------------------------------------------- /clinical_mrnormseg_job.m: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/neurolabusc/Clinical/HEAD/clinical_mrnormseg_job.m -------------------------------------------------------------------------------- /clinical_nii2voi.m: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/neurolabusc/Clinical/HEAD/clinical_nii2voi.m -------------------------------------------------------------------------------- /clinical_rename.m: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/neurolabusc/Clinical/HEAD/clinical_rename.m -------------------------------------------------------------------------------- /clinical_setorigin.m: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/neurolabusc/Clinical/HEAD/clinical_setorigin.m -------------------------------------------------------------------------------- /clinical_smooth.m: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/neurolabusc/Clinical/HEAD/clinical_smooth.m -------------------------------------------------------------------------------- /clinical_smoothmask.m: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/neurolabusc/Clinical/HEAD/clinical_smoothmask.m -------------------------------------------------------------------------------- /gg-flair-181-asym-8mmFWHM.nii: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/neurolabusc/Clinical/HEAD/gg-flair-181-asym-8mmFWHM.nii -------------------------------------------------------------------------------- /sccsf.nii: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/neurolabusc/Clinical/HEAD/sccsf.nii -------------------------------------------------------------------------------- /scct.nii: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/neurolabusc/Clinical/HEAD/scct.nii -------------------------------------------------------------------------------- /scct_stripped.nii: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/neurolabusc/Clinical/HEAD/scct_stripped.nii -------------------------------------------------------------------------------- /scgrey.nii: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/neurolabusc/Clinical/HEAD/scgrey.nii -------------------------------------------------------------------------------- /scwhite.nii: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/neurolabusc/Clinical/HEAD/scwhite.nii -------------------------------------------------------------------------------- /spm_2017May09.ps: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/neurolabusc/Clinical/HEAD/spm_2017May09.ps -------------------------------------------------------------------------------- /tbx_cfg_clinical.m: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/neurolabusc/Clinical/HEAD/tbx_cfg_clinical.m --------------------------------------------------------------------------------