├── .coveragerc ├── .gitignore ├── LICENSE ├── MANIFEST.in ├── README.md ├── TODO ├── doc ├── guidelines.md └── source │ ├── Makefile │ ├── README.md │ ├── conf.py │ ├── index.rst │ ├── installing.rst │ ├── make.bat │ ├── tutorials.rst │ └── upload2github.sh ├── examples ├── Tuto Multiblock.ipynb ├── conesta_egm.py ├── pca_tv.py ├── plot_logistic_regression.py ├── plot_pcatv.py ├── plot_regression.py └── simulated_data_en_gl.py ├── ez_setup.py ├── generate_todo.py ├── parsimony ├── __init__.py ├── algorithms │ ├── __init__.py │ ├── algorithms.py │ ├── bases.py │ ├── cluster.py │ ├── coordinate.py │ ├── deflation.py │ ├── gradient.py │ ├── mcmc.py │ ├── multiblock.py │ ├── nipals.py │ ├── primaldual.py │ ├── proximal.py │ ├── subgradient.py │ └── utils.py ├── config.ini ├── config.py ├── datasets │ ├── Glioma_Data │ │ ├── Data_Subset.csv │ │ └── Kegg_Graph.txt │ ├── Russett.py │ ├── __init__.py │ ├── classification │ │ ├── __init__.py │ │ └── dice5.py │ ├── regression │ │ ├── __init__.py │ │ └── dice5.py │ ├── simulate │ │ ├── __init__.py │ │ ├── beta.py │ │ ├── correlation_matrices.py │ │ ├── grad.py │ │ ├── l1_l2_gl.py │ │ ├── l1_l2_glmu.py │ │ ├── l1_l2_grouptvmu.py │ │ ├── l1_l2_tv.py │ │ ├── l1_l2_tvmu.py │ │ ├── l1mu_l2_tvmu.py │ │ ├── regression.py │ │ ├── simulate.py │ │ └── utils.py │ └── utils.py ├── decomposition │ ├── __init__.py │ └── pca_tv.py ├── estimators.py ├── functions │ ├── __init__.py │ ├── combinedfunctions.py │ ├── losses.py │ ├── multiblock │ │ ├── __init__.py │ │ ├── combinedfunctions.py │ │ ├── losses.py │ │ └── properties.py │ ├── nesterov │ │ ├── __init__.py │ │ ├── gl.py │ │ ├── grouptv.py │ │ ├── l1.py │ │ ├── l1tv.py │ │ ├── properties.py │ │ └── tv.py │ ├── neural.py │ ├── penalties.py │ ├── properties.py │ ├── step_sizes.py │ └── taylor.py └── utils │ ├── __init__.py │ ├── check_arrays.py │ ├── classif_label.py │ ├── consts.py │ ├── linalgs.py │ ├── maths.py │ ├── mcmc.py │ ├── mesh.py │ ├── penalties.py │ ├── plots.py │ ├── resampling.py │ ├── start_vectors.py │ ├── stats.py │ ├── testing.py │ ├── utils.py │ └── weights.py ├── setup.py └── tests ├── .coveragerc ├── __init__.py ├── _playhouse.py ├── data ├── test_logistic_regression_large.npz └── test_logistic_regression_large_dl.npz ├── spamsdata.py ├── test_algorithms.py ├── test_estimators.py ├── test_functions.py ├── test_group_lasso.py ├── test_group_total_variation.py ├── test_linear_regression.py ├── test_linear_regression_large.py ├── test_logistic_regression.py ├── test_logistic_regression_large.py ├── test_multiblock.py ├── test_nesterov_functions.py ├── test_simulations.py ├── test_svd.py ├── test_total_variation.py └── tests.py /.coveragerc: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/neurospin/pylearn-parsimony/HEAD/.coveragerc -------------------------------------------------------------------------------- /.gitignore: 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