├── .dockerignore ├── .github └── workflows │ └── build.yml ├── .gitignore ├── LICENSE ├── LICENSE.txt ├── README.md ├── bin └── fastqc.sh ├── conda.yml ├── data └── ggal │ ├── ggal_1_48850000_49020000.Ggal71.500bpflank.fa │ ├── ggal_1_48850000_49020000.bed.gff │ ├── ggal_gut_1.fq │ ├── ggal_gut_2.fq │ ├── ggal_liver_1.fq │ ├── ggal_liver_2.fq │ ├── ggal_lung_1.fq │ ├── ggal_lung_2.fq │ ├── ggal_spleen_1.fq │ ├── ggal_spleen_2.fq │ ├── ref1.fa │ └── ref2.fa ├── docker ├── Docker.s3 ├── Dockerfile └── Makefile ├── main.nf ├── modules ├── fastqc │ └── main.nf ├── index │ └── main.nf ├── multiqc │ └── main.nf ├── quant │ └── main.nf └── rnaseq.nf ├── multiqc ├── multiqc_config.yaml └── nextflow_logo.png ├── nextflow.config ├── nextflow_schema.json └── tower.yml /.dockerignore: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/nextflow-io/rnaseq-nf/HEAD/.dockerignore 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