├── .dockerignore ├── .gitignore ├── .travis.yml ├── Dockerfile ├── README.md ├── Singularity ├── circle.yml ├── data └── ggal │ ├── ggal_1_48850000_49020000.Ggal71.500bpflank.fa │ ├── ggal_1_48850000_49020000.bed.gff │ ├── ggal_gut_1.fq │ ├── ggal_gut_2.fq │ ├── ggal_liver_1.fq │ └── ggal_liver_2.fq ├── main.nf └── nextflow.config /.dockerignore: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/nextflow-io/rnatoy/HEAD/.dockerignore -------------------------------------------------------------------------------- /.gitignore: -------------------------------------------------------------------------------- 1 | .nextflow* 2 | work/* -------------------------------------------------------------------------------- /.travis.yml: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/nextflow-io/rnatoy/HEAD/.travis.yml -------------------------------------------------------------------------------- /Dockerfile: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/nextflow-io/rnatoy/HEAD/Dockerfile -------------------------------------------------------------------------------- /README.md: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/nextflow-io/rnatoy/HEAD/README.md -------------------------------------------------------------------------------- /Singularity: -------------------------------------------------------------------------------- 1 | Bootstrap:docker 2 | From:nextflow/rnatoy:peerj5515 3 | -------------------------------------------------------------------------------- /circle.yml: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/nextflow-io/rnatoy/HEAD/circle.yml -------------------------------------------------------------------------------- /data/ggal/ggal_1_48850000_49020000.Ggal71.500bpflank.fa: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/nextflow-io/rnatoy/HEAD/data/ggal/ggal_1_48850000_49020000.Ggal71.500bpflank.fa -------------------------------------------------------------------------------- /data/ggal/ggal_1_48850000_49020000.bed.gff: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/nextflow-io/rnatoy/HEAD/data/ggal/ggal_1_48850000_49020000.bed.gff -------------------------------------------------------------------------------- /data/ggal/ggal_gut_1.fq: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/nextflow-io/rnatoy/HEAD/data/ggal/ggal_gut_1.fq -------------------------------------------------------------------------------- /data/ggal/ggal_gut_2.fq: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/nextflow-io/rnatoy/HEAD/data/ggal/ggal_gut_2.fq -------------------------------------------------------------------------------- /data/ggal/ggal_liver_1.fq: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/nextflow-io/rnatoy/HEAD/data/ggal/ggal_liver_1.fq -------------------------------------------------------------------------------- /data/ggal/ggal_liver_2.fq: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/nextflow-io/rnatoy/HEAD/data/ggal/ggal_liver_2.fq -------------------------------------------------------------------------------- /main.nf: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/nextflow-io/rnatoy/HEAD/main.nf -------------------------------------------------------------------------------- /nextflow.config: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/nextflow-io/rnatoy/HEAD/nextflow.config --------------------------------------------------------------------------------