├── .github └── workflows │ └── quarto-publish-example.yaml ├── .gitignore ├── CODE_OF_CONDUCT.md ├── CONTRIBUTING.md ├── LICENSE ├── README.md ├── docs ├── .gitignore ├── _freeze │ ├── documentation │ │ └── visualisation │ │ │ ├── execute-results │ │ │ └── html.json │ │ │ └── figure-html │ │ │ ├── Example Line Chart-1.png │ │ │ └── Example SPC Chart-1.png │ ├── site_libs │ │ ├── Dygraph.Plugins.Crosshair-1.0 │ │ │ └── crosshair.js │ │ ├── Proj4Leaflet-1.0.1 │ │ │ └── proj4leaflet.js │ │ ├── clipboard │ │ │ └── clipboard.min.js │ │ ├── collapsibleTree-0.1.6 │ │ │ ├── collapsibleTree.css │ │ │ └── d3-4.10.2 │ │ │ │ ├── LICENSE │ │ │ │ └── d3.min.js │ │ ├── collapsibleTree-binding-0.1.7 │ │ │ └── collapsibleTree.js │ │ ├── core-js-2.5.3 │ │ │ ├── LICENSE │ │ │ ├── package.json │ │ │ └── shim.min.js │ │ ├── crosstalk-1.2.0 │ │ │ ├── css │ │ │ │ └── crosstalk.min.css │ │ │ ├── js │ │ │ │ ├── crosstalk.js │ │ │ │ ├── crosstalk.js.map │ │ │ │ ├── crosstalk.min.js │ │ │ │ └── crosstalk.min.js.map │ │ │ └── scss │ │ │ │ └── crosstalk.scss │ │ ├── d3-4.10.2 │ │ │ ├── LICENSE │ │ │ └── d3.min.js │ │ ├── datatables-binding-0.26 │ │ │ └── datatables.js │ │ ├── datatables-css-0.0.0 │ │ │ └── datatables-crosstalk.css │ │ ├── dt-core-1.12.1 │ │ │ ├── css │ │ │ │ ├── jquery.dataTables.extra.css │ │ │ │ └── jquery.dataTables.min.css │ │ │ └── js │ │ │ │ └── jquery.dataTables.min.js │ │ ├── dt-ext-buttons-1.12.1 │ │ │ ├── css │ │ │ │ └── buttons.dataTables.min.css │ │ │ └── js │ │ │ │ ├── buttons.colVis.min.js │ │ │ │ ├── buttons.html5.min.js │ │ │ │ ├── buttons.print.min.js │ │ │ │ └── dataTables.buttons.min.js │ │ ├── dygraphs-1.1.1 │ │ │ ├── dygraph-combined-dev.js │ │ │ ├── dygraph-combined.js │ │ │ ├── dygraph.css │ │ │ └── shapes.js │ │ ├── dygraphs-binding-1.1.1.6 │ │ │ └── dygraphs.js │ │ ├── fontawesome-4.7.0 │ │ │ ├── bootstrap-theme.min.css │ │ │ ├── bootstrap.min.css │ │ │ ├── bootstrap.min.js │ │ │ ├── font-awesome.min.css │ │ │ ├── fonts │ │ │ │ ├── FontAwesome.otf │ │ │ │ ├── fontawesome-webfont.eot │ │ │ │ ├── fontawesome-webfont.svg │ │ │ │ ├── fontawesome-webfont.ttf │ │ │ │ ├── fontawesome-webfont.woff │ │ │ │ ├── glyphicons-halflings-regular.eot │ │ │ │ ├── glyphicons-halflings-regular.svg │ │ │ │ ├── glyphicons-halflings-regular.ttf │ │ │ │ ├── glyphicons-halflings-regular.woff │ │ │ │ ├── ionicons.eot │ │ │ │ ├── ionicons.svg │ │ │ │ ├── ionicons.ttf │ │ │ │ └── ionicons.woff │ │ │ ├── images │ │ │ │ ├── markers-matte.png │ │ │ │ ├── markers-matte@2x.png │ │ │ │ ├── markers-plain.png │ │ │ │ ├── markers-shadow.png │ │ │ │ ├── markers-shadow@2x.png │ │ │ │ ├── markers-soft.png │ │ │ │ └── markers-soft@2x.png │ │ │ ├── ionicons.min.css │ │ │ ├── leaflet.awesome-markers.css │ │ │ ├── leaflet.awesome-markers.js │ │ │ └── leaflet.awesome-markers.min.js │ │ ├── htmlwidgets-1.6.0 │ │ │ └── htmlwidgets.js │ │ ├── jquery-3.6.0 │ │ │ ├── jquery-3.6.0.js │ │ │ ├── jquery-3.6.0.min.js │ │ │ └── jquery-3.6.0.min.map │ │ ├── kePrint-0.0.1 │ │ │ └── kePrint.js │ │ ├── leaflet-1.3.1 │ │ │ ├── images │ │ │ │ ├── layers-2x.png │ │ │ │ ├── layers.png │ │ │ │ ├── marker-icon-2x.png │ │ │ │ ├── marker-icon.png │ │ │ │ └── marker-shadow.png │ │ │ ├── leaflet.css │ │ │ └── leaflet.js │ │ ├── leaflet-awesomemarkers-2.0.3 │ │ │ ├── bootstrap-theme.min.css │ │ │ ├── bootstrap.min.css │ │ │ ├── bootstrap.min.js │ │ │ ├── font-awesome.min.css │ │ │ ├── fonts │ │ │ │ ├── FontAwesome.otf │ │ │ │ ├── fontawesome-webfont.eot │ │ │ │ ├── fontawesome-webfont.svg │ │ │ │ ├── fontawesome-webfont.ttf │ │ │ │ ├── fontawesome-webfont.woff │ │ │ │ ├── glyphicons-halflings-regular.eot │ │ │ │ ├── glyphicons-halflings-regular.svg │ │ │ │ ├── glyphicons-halflings-regular.ttf │ │ │ │ ├── glyphicons-halflings-regular.woff │ │ │ │ ├── ionicons.eot │ │ │ │ ├── ionicons.svg │ │ │ │ ├── ionicons.ttf │ │ │ │ └── ionicons.woff │ │ │ ├── images │ │ │ │ ├── markers-matte.png │ │ │ │ ├── markers-matte@2x.png │ │ │ │ ├── markers-plain.png │ │ │ │ ├── markers-shadow.png │ │ │ │ ├── markers-shadow@2x.png │ │ │ │ ├── markers-soft.png │ │ │ │ └── markers-soft@2x.png │ │ │ ├── ionicons.min.css │ │ │ ├── leaflet.awesome-markers.css │ │ │ ├── leaflet.awesome-markers.js │ │ │ └── leaflet.awesome-markers.min.js │ │ ├── leaflet-binding-2.1.1 │ │ │ └── leaflet.js │ │ ├── leaflet-providers-1.9.0 │ │ │ └── leaflet-providers_1.9.0.js │ │ ├── leaflet-providers-plugin-2.1.1 │ │ │ └── leaflet-providers-plugin.js │ │ ├── leafletfix-1.0.0 │ │ │ └── leafletfix.css │ │ ├── lightable-0.0.1 │ │ │ └── lightable.css │ │ ├── moment-2.8.4 │ │ │ ├── moment-timezone-with-data.js │ │ │ └── moment.js │ │ ├── moment-fquarter-1.0.0 │ │ │ └── moment-fquarter.min.js │ │ ├── moment-timezone-0.2.5 │ │ │ ├── moment-timezone-with-data.js │ │ │ └── moment.js │ │ ├── nouislider-7.0.10 │ │ │ ├── jquery.nouislider.min.css │ │ │ └── jquery.nouislider.min.js │ │ ├── pdfmake-1.12.1 │ │ │ ├── pdfmake.js │ │ │ └── vfs_fonts.js │ │ ├── plotly-binding-4.10.1 │ │ │ └── plotly.js │ │ ├── plotly-htmlwidgets-css-2.11.1 │ │ │ └── plotly-htmlwidgets.css │ │ ├── plotly-main-2.11.1 │ │ │ └── plotly-latest.min.js │ │ ├── proj4-2.6.2 │ │ │ └── proj4.min.js │ │ ├── quarto-listing │ │ │ ├── list.min.js │ │ │ └── quarto-listing.js │ │ ├── react-17.0.0 │ │ │ ├── AUTHORS │ │ │ ├── LICENSE.txt │ │ │ ├── react-dom.min.js │ │ │ └── react.min.js │ │ ├── reactable-0.4.3 │ │ │ ├── reactable.css │ │ │ ├── reactable.js │ │ │ ├── reactable.js.map │ │ │ ├── reactable.server.js │ │ │ ├── reactable.server.js.LICENSE.txt │ │ │ ├── reactable.server.js.map │ │ │ └── reactable.yaml │ │ ├── reactable-binding-0.4.3 │ │ │ └── reactable.js │ │ ├── reactwidget-1.0.0 │ │ │ ├── react-tools.js │ │ │ └── react-tools.js.map │ │ ├── rstudio_leaflet-1.3.1 │ │ │ ├── images │ │ │ │ └── 1px.png │ │ │ └── rstudio_leaflet.css │ │ ├── selectize-0.12.0 │ │ │ ├── selectize.bootstrap3.css │ │ │ └── selectize.min.js │ │ ├── typedarray-0.1 │ │ │ └── typedarray.min.js │ │ ├── wordcloud2-0.0.1 │ │ │ ├── hover.js │ │ │ ├── wordcloud.css │ │ │ └── wordcloud2-all.js │ │ └── wordcloud2-binding-0.2.1 │ │ │ └── wordcloud2.js │ └── tutorials │ │ ├── quarto │ │ ├── execute-results │ │ │ └── html.json │ │ └── figure-html │ │ │ ├── unnamed-chunk-10-1.png │ │ │ ├── unnamed-chunk-12-1.png │ │ │ ├── unnamed-chunk-13-1.png │ │ │ ├── unnamed-chunk-14-1.png │ │ │ ├── unnamed-chunk-25-1.png │ │ │ ├── unnamed-chunk-26-1.png │ │ │ ├── unnamed-chunk-4-1.png │ │ │ ├── unnamed-chunk-5-1.png │ │ │ ├── unnamed-chunk-6-1.png │ │ │ ├── unnamed-chunk-7-1.png │ │ │ ├── unnamed-chunk-8-1.png │ │ │ └── unnamed-chunk-9-1.png │ │ ├── spc │ │ ├── execute-results │ │ │ └── html.json │ │ └── figure-html │ │ │ └── Example SPC Chart-1.png │ │ └── udal │ │ └── execute-results │ │ └── html.json ├── _quarto.yml ├── _site │ ├── assets │ │ ├── favicons │ │ │ └── favicon.ico │ │ ├── figures │ │ │ ├── ae_attendance_img.png │ │ │ ├── github-desktop.png │ │ │ ├── intro-to-r-git │ │ │ │ ├── access-token-scope.png │ │ │ │ ├── github-check.png │ │ │ │ ├── github-clone.png │ │ │ │ ├── github-create-repo.png │ │ │ │ ├── github-token.png │ │ │ │ ├── rstudio-git-menu.png │ │ │ │ └── rstudio-git.png │ │ │ └── spc.png │ │ ├── logos │ │ │ ├── GitHub-logo.png │ │ │ ├── Making-data-count.jpg │ │ │ ├── git-rstudio.png │ │ │ ├── nhs-england-large.png │ │ │ ├── nhs-england.jpg │ │ │ └── nhsr.png │ │ └── style │ │ │ └── styles.css │ ├── contribute.html │ ├── documentation │ │ ├── dplyr-functions.html │ │ ├── index.html │ │ ├── methods.html │ │ ├── nhs-colours.html │ │ ├── statistics.html │ │ ├── tables.html │ │ ├── visualisation.html │ │ └── visualisation_files │ │ │ └── figure-html │ │ │ ├── Example Line Chart-1.png │ │ │ └── Example SPC Chart-1.png │ ├── examples │ │ └── ae_attendance.html │ ├── faq.html │ ├── index.html │ ├── listings.json │ ├── posts │ │ ├── r-studio-git.html │ │ ├── r-udal.html │ │ ├── rap-maturity │ │ │ ├── index.html │ │ │ └── nhsd-rap.png │ │ ├── rstudio-git │ │ │ ├── github-rstudio.png │ │ │ ├── index.html │ │ │ └── thumbnail.png │ │ └── welcome │ │ │ ├── index.html │ │ │ └── thumbnail.jpg │ ├── robots.txt │ ├── search.json │ ├── site_libs │ │ ├── Dygraph.Plugins.Crosshair-1.0 │ │ │ └── crosshair.js │ │ ├── Proj4Leaflet-1.0.1 │ │ │ └── proj4leaflet.js │ │ ├── bootstrap │ │ │ ├── bootstrap-icons.css │ │ │ ├── bootstrap-icons.woff │ │ │ ├── bootstrap.min.css │ │ │ └── bootstrap.min.js │ │ ├── clipboard │ │ │ └── clipboard.min.js │ │ ├── collapsibleTree-0.1.6 │ │ │ ├── collapsibleTree.css │ │ │ └── d3-4.10.2 │ │ │ │ ├── LICENSE │ │ │ │ └── d3.min.js │ │ ├── collapsibleTree-binding-0.1.7 │ │ │ └── collapsibleTree.js │ │ ├── core-js-2.5.3 │ │ │ ├── LICENSE │ │ │ ├── package.json │ │ │ └── shim.min.js │ │ ├── crosstalk-1.2.0 │ │ │ ├── css │ │ │ │ └── crosstalk.min.css │ │ │ ├── js │ │ │ │ ├── crosstalk.js │ │ │ │ ├── crosstalk.js.map │ │ │ │ ├── crosstalk.min.js │ │ │ │ └── crosstalk.min.js.map │ │ │ └── scss │ │ │ │ └── crosstalk.scss │ │ ├── d3-4.10.2 │ │ │ ├── LICENSE │ │ │ └── d3.min.js │ │ ├── datatables-binding-0.26 │ │ │ └── datatables.js │ │ ├── datatables-css-0.0.0 │ │ │ └── datatables-crosstalk.css │ │ ├── dt-core-1.12.1 │ │ │ ├── css │ │ │ │ ├── jquery.dataTables.extra.css │ │ │ │ └── jquery.dataTables.min.css │ │ │ └── js │ │ │ │ └── jquery.dataTables.min.js │ │ ├── dt-ext-buttons-1.12.1 │ │ │ ├── css │ │ │ │ └── buttons.dataTables.min.css │ │ │ └── js │ │ │ │ ├── buttons.colVis.min.js │ │ │ │ ├── buttons.html5.min.js │ │ │ │ ├── buttons.print.min.js │ │ │ │ └── dataTables.buttons.min.js │ │ ├── dygraphs-1.1.1 │ │ │ ├── dygraph-combined-dev.js │ │ │ ├── dygraph-combined.js │ │ │ ├── dygraph.css │ │ │ └── shapes.js │ │ ├── dygraphs-binding-1.1.1.6 │ │ │ └── dygraphs.js │ │ ├── fontawesome-4.7.0 │ │ │ ├── bootstrap-theme.min.css │ │ │ ├── bootstrap.min.css │ │ │ ├── bootstrap.min.js │ │ │ ├── font-awesome.min.css │ │ │ ├── fonts │ │ │ │ ├── FontAwesome.otf │ │ │ │ ├── fontawesome-webfont.eot │ │ │ │ ├── fontawesome-webfont.svg │ │ │ │ ├── fontawesome-webfont.ttf │ │ │ │ ├── fontawesome-webfont.woff │ │ │ │ ├── glyphicons-halflings-regular.eot │ │ │ │ ├── glyphicons-halflings-regular.svg │ │ │ │ ├── glyphicons-halflings-regular.ttf │ │ │ │ ├── glyphicons-halflings-regular.woff │ │ │ │ ├── ionicons.eot │ │ │ │ ├── ionicons.svg │ │ │ │ ├── ionicons.ttf │ │ │ │ └── ionicons.woff │ │ │ ├── images │ │ │ │ ├── markers-matte.png │ │ │ │ ├── markers-matte@2x.png │ │ │ │ ├── markers-plain.png │ │ │ │ ├── markers-shadow.png │ │ │ │ ├── markers-shadow@2x.png │ │ │ │ ├── markers-soft.png │ │ │ │ └── markers-soft@2x.png │ │ │ ├── ionicons.min.css │ │ │ ├── leaflet.awesome-markers.css │ │ │ ├── leaflet.awesome-markers.js │ │ │ └── leaflet.awesome-markers.min.js │ │ ├── htmlwidgets-1.6.0 │ │ │ └── htmlwidgets.js │ │ ├── jquery-3.6.0 │ │ │ ├── jquery-3.6.0.js │ │ │ ├── jquery-3.6.0.min.js │ │ │ └── jquery-3.6.0.min.map │ │ ├── kePrint-0.0.1 │ │ │ └── kePrint.js │ │ ├── leaflet-1.3.1 │ │ │ ├── images │ │ │ │ ├── layers-2x.png │ │ │ │ ├── layers.png │ │ │ │ ├── marker-icon-2x.png │ │ │ │ ├── marker-icon.png │ │ │ │ └── marker-shadow.png │ │ │ ├── leaflet.css │ │ │ └── leaflet.js │ │ ├── leaflet-awesomemarkers-2.0.3 │ │ │ ├── bootstrap-theme.min.css │ │ │ ├── bootstrap.min.css │ │ │ ├── bootstrap.min.js │ │ │ ├── font-awesome.min.css │ │ │ ├── fonts │ │ │ │ ├── FontAwesome.otf │ │ │ │ ├── fontawesome-webfont.eot │ │ │ │ ├── fontawesome-webfont.svg │ │ │ │ ├── fontawesome-webfont.ttf │ │ │ │ ├── fontawesome-webfont.woff │ │ │ │ ├── glyphicons-halflings-regular.eot │ │ │ │ ├── glyphicons-halflings-regular.svg │ │ │ │ ├── glyphicons-halflings-regular.ttf │ │ │ │ ├── glyphicons-halflings-regular.woff │ │ │ │ ├── ionicons.eot │ │ │ │ ├── ionicons.svg │ │ │ │ ├── ionicons.ttf │ │ │ │ └── ionicons.woff │ │ │ ├── images │ │ │ │ ├── markers-matte.png │ │ │ │ ├── markers-matte@2x.png │ │ │ │ ├── markers-plain.png │ │ │ │ ├── markers-shadow.png │ │ │ │ ├── markers-shadow@2x.png │ │ │ │ ├── markers-soft.png │ │ │ │ └── markers-soft@2x.png │ │ │ ├── ionicons.min.css │ │ │ ├── leaflet.awesome-markers.css │ │ │ ├── leaflet.awesome-markers.js │ │ │ └── leaflet.awesome-markers.min.js │ │ ├── leaflet-binding-2.1.1 │ │ │ └── leaflet.js │ │ ├── leaflet-providers-1.9.0 │ │ │ └── leaflet-providers_1.9.0.js │ │ ├── leaflet-providers-plugin-2.1.1 │ │ │ └── leaflet-providers-plugin.js │ │ ├── leafletfix-1.0.0 │ │ │ └── leafletfix.css │ │ ├── lightable-0.0.1 │ │ │ └── lightable.css │ │ ├── moment-2.8.4 │ │ │ ├── moment-timezone-with-data.js │ │ │ └── moment.js │ │ ├── moment-fquarter-1.0.0 │ │ │ └── moment-fquarter.min.js │ │ ├── moment-timezone-0.2.5 │ │ │ ├── moment-timezone-with-data.js │ │ │ └── moment.js │ │ ├── nouislider-7.0.10 │ │ │ ├── jquery.nouislider.min.css │ │ │ └── jquery.nouislider.min.js │ │ ├── pdfmake-1.12.1 │ │ │ ├── pdfmake.js │ │ │ └── vfs_fonts.js │ │ ├── plotly-binding-4.10.1 │ │ │ └── plotly.js │ │ ├── plotly-htmlwidgets-css-2.11.1 │ │ │ └── plotly-htmlwidgets.css │ │ ├── plotly-main-2.11.1 │ │ │ └── plotly-latest.min.js │ │ ├── proj4-2.6.2 │ │ │ └── proj4.min.js │ │ ├── quarto-diagram │ │ │ ├── mermaid-init.js │ │ │ ├── mermaid.css │ │ │ └── mermaid.min.js │ │ ├── quarto-html │ │ │ ├── anchor.min.js │ │ │ ├── popper.min.js │ │ │ ├── quarto-syntax-highlighting.css │ │ │ ├── quarto.js │ │ │ ├── tippy.css │ │ │ └── tippy.umd.min.js │ │ ├── quarto-listing │ │ │ ├── list.min.js │ │ │ └── quarto-listing.js │ │ ├── quarto-nav │ │ │ └── quarto-nav.js │ │ ├── quarto-search │ │ │ ├── autocomplete.umd.js │ │ │ ├── fuse.min.js │ │ │ └── quarto-search.js │ │ ├── react-17.0.0 │ │ │ ├── AUTHORS │ │ │ ├── LICENSE.txt │ │ │ ├── react-dom.min.js │ │ │ └── react.min.js │ │ ├── reactable-0.4.3 │ │ │ ├── reactable.css │ │ │ ├── reactable.js │ │ │ ├── reactable.js.map │ │ │ ├── reactable.server.js │ │ │ ├── reactable.server.js.LICENSE.txt │ │ │ ├── reactable.server.js.map │ │ │ └── reactable.yaml │ │ ├── reactable-binding-0.4.3 │ │ │ └── reactable.js │ │ ├── reactwidget-1.0.0 │ │ │ ├── react-tools.js │ │ │ └── react-tools.js.map │ │ ├── rstudio_leaflet-1.3.1 │ │ │ ├── images │ │ │ │ └── 1px.png │ │ │ └── rstudio_leaflet.css │ │ ├── selectize-0.12.0 │ │ │ ├── selectize.bootstrap3.css │ │ │ └── selectize.min.js │ │ ├── typedarray-0.1 │ │ │ └── typedarray.min.js │ │ ├── wordcloud2-0.0.1 │ │ │ ├── hover.js │ │ │ ├── wordcloud.css │ │ │ └── wordcloud2-all.js │ │ └── wordcloud2-binding-0.2.1 │ │ │ └── wordcloud2.js │ ├── statement-on-tools.html │ ├── tutorials │ │ ├── github.html │ │ ├── index.html │ │ ├── nhs-colours.html │ │ ├── piv.html │ │ ├── piv_files │ │ │ └── piv.html │ │ ├── quarto.html │ │ ├── quarto_files │ │ │ └── figure-html │ │ │ │ ├── unnamed-chunk-10-1.png │ │ │ │ ├── unnamed-chunk-12-1.png │ │ │ │ ├── unnamed-chunk-13-1.png │ │ │ │ ├── unnamed-chunk-14-1.png │ │ │ │ ├── unnamed-chunk-25-1.png │ │ │ │ ├── unnamed-chunk-26-1.png │ │ │ │ ├── unnamed-chunk-4-1.png │ │ │ │ ├── unnamed-chunk-5-1.png │ │ │ │ ├── unnamed-chunk-6-1.png │ │ │ │ ├── unnamed-chunk-7-1.png │ │ │ │ ├── unnamed-chunk-8-1.png │ │ │ │ └── unnamed-chunk-9-1.png │ │ ├── r-language.html │ │ ├── rap.html │ │ ├── reproducible-analytical-pipelines.html │ │ ├── rstudio-git.html │ │ ├── spc.html │ │ ├── spc_files │ │ │ └── figure-html │ │ │ │ └── Example SPC Chart-1.png │ │ └── udal.html │ └── updates.html ├── assets │ ├── favicons │ │ ├── favicon.ico │ │ ├── favicon.png │ │ └── r_logo.tif │ ├── figures │ │ ├── README-example-1.png │ │ ├── ae_attendance_img.png │ │ ├── github-desktop.png │ │ ├── intro-to-r-git │ │ │ ├── access-token-scope.png │ │ │ ├── github-check.png │ │ │ ├── github-clone.png │ │ │ ├── github-create-repo.png │ │ │ ├── github-token.png │ │ │ ├── rstudio-git-menu.png │ │ │ └── rstudio-git.png │ │ ├── rstudio-editor-toolbar.png │ │ └── spc.png │ ├── icons │ │ ├── icon-arrow-left.svg │ │ ├── icon-arrow-right-circle.svg │ │ ├── icon-arrow-right.svg │ │ ├── icon-chevron-left.svg │ │ ├── icon-chevron-right.svg │ │ ├── icon-close.svg │ │ ├── icon-cross.svg │ │ ├── icon-emdash-small.svg │ │ ├── icon-emdash.svg │ │ ├── icon-minus.svg │ │ ├── icon-plus.svg │ │ ├── icon-search.svg │ │ └── icon-tick.svg │ ├── logos │ │ ├── GitHub-logo.png │ │ ├── Making-data-count.jpg │ │ ├── RStudio-ball.svg │ │ ├── git-rstudio.png │ │ ├── logo-nhs-200.png │ │ ├── logo-nhs-300.png │ │ ├── logo-nhs-white.png │ │ ├── logo-nhs.png │ │ ├── logo-nhs.svg │ │ ├── logo.png │ │ ├── markdown-logo.png │ │ ├── nhs-england-large.png │ │ ├── nhs-england.jpg │ │ ├── nhsr.jpg │ │ ├── nhsr.png │ │ ├── open-graph.png │ │ ├── quarto-logo.png │ │ └── r-markdown-logo.png │ └── style │ │ ├── js.html │ │ ├── styles.css │ │ └── theme.scss ├── contribute.qmd ├── examples │ └── ae_attendance.html ├── faq.qmd ├── index.css ├── index.qmd ├── posts │ ├── _metadata.yml │ ├── r-studio-git.qmd │ └── r-udal.qmd ├── statement-on-tools.qmd ├── tutorials │ ├── Publish_Quarto_to_sharepoint │ │ └── readme.txt │ ├── R_drop_in_session_26_may_Maps_in_R │ │ ├── Figures_maps_slides │ │ │ ├── 02 Health boundaries.png │ │ │ ├── 05 Load ccg indicators.png │ │ │ ├── 05 Unzip Shapefile ENG size.jpg │ │ │ ├── 05 Unzip Shapefile ENG.PNG │ │ │ ├── 05 Unzip Shapefile.png │ │ │ ├── 06 Unzip Shapefile.png │ │ │ ├── CCG Boundaries April 2021_coral.jpeg │ │ │ ├── CCG outcomes indicator set.PNG │ │ │ ├── Figures_maps_slides.txt │ │ │ ├── Health boundaries details.png │ │ │ └── Health boundaries details02.png │ │ ├── Maps_in_R.txt │ │ ├── data │ │ │ ├── CCG_1.17_I01968_D.xlsx │ │ │ ├── Clinical_Commissioning_Groups_April_2021 │ │ │ │ ├── CCG_APR_2021_EN_BGC.cpg │ │ │ │ ├── CCG_APR_2021_EN_BGC.dbf │ │ │ │ ├── CCG_APR_2021_EN_BGC.prj │ │ │ │ ├── CCG_APR_2021_EN_BGC.shp │ │ │ │ ├── CCG_APR_2021_EN_BGC.shx │ │ │ │ └── shapefiles_description.txt │ │ │ └── shapefiles_used_for_maps.txt │ │ ├── maps in R 26 May 2023.html │ │ └── mapsinR26May2023.qmd │ ├── github.qmd │ ├── index.qmd │ ├── nhs-colours.qmd │ ├── quarto.qmd │ ├── r-language.qmd │ ├── rap.qmd │ ├── rstudio-git.qmd │ ├── spc.qmd │ └── udal.qmd └── updates.qmd ├── examples ├── Interactive_Quarto_v2.qmd ├── databricks-rcluster-load-data-example.R └── rstudio_datalake_connection_example.R ├── nhs-r-reporting.Rproj └── utility └── nhs_style.R /.github/workflows/quarto-publish-example.yaml: -------------------------------------------------------------------------------- 1 | on: 2 | push: 3 | branches: 4 | - main 5 | pull_request: 6 | branches: 7 | - main 8 | 9 | name: Render and Publish 10 | 11 | # you need these permissions to publish to GitHub pages 12 | permissions: 13 | contents: write 14 | pages: write 15 | 16 | jobs: 17 | build-deploy: 18 | runs-on: ubuntu-latest 19 | 20 | steps: 21 | - name: Check out repository 22 | uses: actions/checkout@v4 23 | 24 | - name: Set up Quarto 25 | uses: quarto-dev/quarto-actions/setup@v2 26 | 27 | - name: Publish to Github Pages (and render) 28 | uses: quarto-dev/quarto-actions/publish@v2 29 | with: 30 | target: gh-pages 31 | path: docs/_site 32 | tinytex: true 33 | env: 34 | GH_TOKEN: ${{ secrets.GITHUB_TOKEN }} 35 | # To install LaTeX to build PDF book 36 | 37 | # uncomment below and fill to pin a version 38 | # version: SPECIFIC-QUARTO-VERSION-HERE 39 | 40 | # add software dependencies here and any libraries 41 | 42 | # From https://github.com/actions/setup-python 43 | # - name: Setup Python 44 | # uses: actions/setup-python@v3 45 | 46 | # From https://github.com/r-lib/actions/tree/v2-branch/setup-r 47 | # - name: Setup R 48 | # uses: r-lib/actions/setup-r@v2 49 | 50 | # From https://github.com/julia-actions/setup-julia 51 | # - name: Setup Julia 52 | # uses: julia-actions/setup-julia@v1 53 | 54 | # See more at https://github.com/quarto-dev/quarto-actions/blob/main/examples/example-03-dependencies.md 55 | 56 | # To publish to Netlify, RStudio Connect, or GitHub Pages, uncomment 57 | # the appropriate block below 58 | 59 | # - name: Publish to Netlify (and render) 60 | # uses: quarto-dev/quarto-actions/publish@v2 61 | # with: 62 | # target: netlify 63 | # NETLIFY_AUTH_TOKEN: ${{ secrets.NETLIFY_AUTH_TOKEN }} 64 | 65 | # - name: Publish to RStudio Connect (and render) 66 | # uses: quarto-dev/quarto-actions/publish@v2 67 | # with: 68 | # target: connect 69 | # CONNECT_SERVER: enter-the-server-url-here 70 | # CONNECT_API_KEY: ${{ secrets.CONNECT_API_KEY }} 71 | 72 | # NOTE: If Publishing to GitHub Pages, set the permissions correctly (see top of this yaml) 73 | # - name: Publish to GitHub Pages (and render) 74 | # uses: quarto-dev/quarto-actions/publish@v2 75 | # with: 76 | # target: gh-pages 77 | # env: 78 | # GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }} # this secret is always available for github actions 79 | 80 | # - name: Publish to confluence 81 | # uses: quarto-dev/quarto-actions/publish@v2 82 | # with: 83 | # target: confluence 84 | # env: 85 | # CONFLUENCE_USER_EMAIL: ${{ secrets.CONFLUENCE_USER_EMAIL }} 86 | # CONFLUENCE_AUTH_TOKEN: ${{ secrets.CONFLUENCE_AUTH_TOKEN }} 87 | # CONFLUENCE_DOMAIN: ${{ secrets.CONFLUENCE_DOMAIN }} 88 | 89 | # Add comment to trigger yaml Action 90 | 91 | -------------------------------------------------------------------------------- /.gitignore: -------------------------------------------------------------------------------- 1 | # History files 2 | .Rhistory 3 | .Rapp.history 4 | 5 | # Session Data files 6 | .RData 7 | 8 | # User-specific files 9 | .Ruserdata 10 | 11 | # Example code in package build process 12 | *-Ex.R 13 | 14 | # Output files from R CMD build 15 | /*.tar.gz 16 | 17 | # Output files from R CMD check 18 | /*.Rcheck/ 19 | 20 | # RStudio files 21 | .Rproj.user/ 22 | 23 | # produced vignettes 24 | vignettes/*.html 25 | vignettes/*.pdf 26 | 27 | # OAuth2 token, see https://github.com/hadley/httr/releases/tag/v0.3 28 | .httr-oauth 29 | 30 | # knitr and R markdown default cache directories 31 | *_cache/ 32 | /cache/ 33 | 34 | # Temporary files created by R markdown 35 | *.utf8.md 36 | *.knit.md 37 | 38 | # R Environment Variables 39 | .Renviron 40 | 41 | # Mac files 42 | .DS_Store 43 | 44 | # Data files 45 | *.xlsx 46 | ~$*.xls* 47 | *.xlk 48 | *.xlsm 49 | *.xlsb 50 | *.xltx 51 | *.xltm 52 | *.xlt 53 | *.xls 54 | *.xml 55 | *.xlam 56 | *.xla 57 | *.xlw 58 | *.xlr 59 | *.tmp 60 | *.doc* 61 | ~$*.doc* 62 | *.doc* 63 | *.csv 64 | *.dif 65 | *.ods -------------------------------------------------------------------------------- /CONTRIBUTING.md: -------------------------------------------------------------------------------- 1 | # How to contribute? 2 | 3 | ## Make a new branch of the repository 4 | 5 | ```bash 6 | git checkout -b 7 | ``` 8 | 9 | ## Make a new `.qmd` (q-markdown) file in the `/docs` folder 10 | 11 | To the `.qmd` file add a YAML header with a title and subtitle. 12 | ```yaml 13 | --- 14 | title: Contribute to the docs 15 | subtitle: "How to add a new page to the documentations site using Quarto?" 16 | --- 17 | ``` 18 | 19 | ## Add a link to your file to the `_quarto.yml` config file in `/docs` 20 | 21 | Open the `_quarto.yml` configuration file and find the `sidebar` config code. 22 | ```yaml 23 | sidebar: 24 | - id: nav 25 | style: "floating" 26 | collapse-level: 3 27 | align: left 28 | contents: 29 | ``` 30 | Under the `contents:` object add a new section (if required), a string lable for your page, and a link to the `.qmd` file itself. 31 | 32 | ```yaml 33 | - section: "RAP" 34 | contents: 35 | - text: "Reproducible Analytical Pipelines" 36 | file: intro-to-rap.qmd 37 | ``` 38 | 39 | ## Publish your changes to GitHub 40 | 41 | ::: {.callout-warning appearance="simple" collapse="false"} 42 | ## Render Quarto before publishing 43 | 44 | Remember to [render your changes locally using R-Studio](https://quarto.org/docs/tools/rstudio.html#render-and-preview) before publishing 45 | ::: 46 | 47 | Commit your changes locally 48 | 49 | ```bash 50 | git commit -m 'Added new page to docs' 51 | ``` 52 | 53 | Then push your changes to the remote branch 54 | 55 | ```bash 56 | git push origin 57 | ``` 58 | 59 | Finally, open a Pull Request (PR) [https://github.com/nhsengland/nhs-r-reporting/pulls](https://github.com/nhsengland/nhs-r-reporting/pulls) -------------------------------------------------------------------------------- /LICENSE: -------------------------------------------------------------------------------- 1 | MIT License 2 | 3 | Copyright (c) 2023 NHS England 4 | 5 | Permission is hereby granted, free of charge, to any person obtaining a copy 6 | of this software and associated documentation files (the "Software"), to deal 7 | in the Software without restriction, including without limitation the rights 8 | to use, copy, modify, merge, publish, distribute, sublicense, and/or sell 9 | copies of the Software, and to permit persons to whom the Software is 10 | furnished to do so, subject to the following conditions: 11 | 12 | The above copyright notice and this permission notice shall be included in all 13 | copies or substantial portions of the Software. 14 | 15 | THE SOFTWARE IS PROVIDED "AS IS", WITHOUT WARRANTY OF ANY KIND, EXPRESS OR 16 | IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF MERCHANTABILITY, 17 | FITNESS FOR A PARTICULAR PURPOSE AND NONINFRINGEMENT. IN NO EVENT SHALL THE 18 | AUTHORS OR COPYRIGHT HOLDERS BE LIABLE FOR ANY CLAIM, DAMAGES OR OTHER 19 | LIABILITY, WHETHER IN AN ACTION OF CONTRACT, TORT OR OTHERWISE, ARISING FROM, 20 | OUT OF OR IN CONNECTION WITH THE SOFTWARE OR THE USE OR OTHER DEALINGS IN THE 21 | SOFTWARE. 22 | -------------------------------------------------------------------------------- /README.md: -------------------------------------------------------------------------------- 1 | 2 |
3 |

4 | 5 | Logo 6 | 7 | 8 |

R Reporting

9 | 10 |

11 | NHS England R Community 12 |
13 | Explore the docs » 14 |
15 |
16 | Report Bug 17 | · 18 | Request Feature 19 |

20 |

21 | 22 | 23 |
24 |

Table of Contents

 25 |
    26 |
  1. 27 | About The Project 28 | 32 |
    2. 33 |
  2. 34 | Getting Started 35 |
  3. Roadmap
    4. 36 |
  4. Contributing
    5. 37 |
  5. License
    6. 38 | 39 |
40 |
41 | 42 | 43 | 44 | ## About The Project 45 | 46 | NHS England R Reporting repository 47 | 48 | _**Note:** No data, public or private are shared in this repository._ 49 | 50 | ### Folder Stucture 51 | 52 | | Name | Link | Description | 53 | | ---- | ---- | ----------- | 54 | | .github/workflows/ | [[Link](https://github.com/nhsengland/nhs-r-reporting/tree/main/.github/workflows)] | GitHub Actions that build the documentation site on commit to /docs | 55 | | assets/ | [[Link](https://github.com/nhsengland/nhs-r-reporting/assets)] | Style assets for reports and documentation site | 56 | | docs/ | [[Link](https://github.com/nhsengland/nhs-r-reporting)] | Documentation site files | 57 | | references/ | [[Link](https://github.com/nhsengland/nhs-r-reporting)] | Central bibliographical reference library | 58 | | reports/ | [[Link](https://github.com/nhsengland/nhs-r-reporting)] | Published q-markdown reports and source files | 59 | 60 | ### Built With 61 | 62 | - [Quarto](https://quarto.org/) 63 | - [R](https://www.r-project.org/) 64 | - [GitHub Actions](https://github.com/features/actions) 65 | - [Azure](https://azure.microsoft.com/en-gb/) 66 | 67 | 68 | 69 | ## Getting Started 70 | 71 | Please refer to the [Quarto Tutorial](https://openscapes.github.io/quarto-website-tutorial/) site 72 | 73 | 74 | 75 | ## Roadmap 76 | 77 | See the [open issues](https://github.com/nhsengland/nhs-r-reporting/issues) for a list of proposed features (and known issues). 78 | 79 | 80 | 81 | ## Contributing 82 | 83 | Contributions are what make the open source community such an amazing place to learn, inspire, and create. Any contributions you make are **greatly appreciated**. 84 | 85 | _See [CONTRIBUTING.md](https://github.com/nhsengland/nhs-r-reporting/blob/main/CONTRIBUTING.md) for detailed guidance._ 86 | 87 | 88 | 89 | ## License 90 | 91 | Distributed under the MIT License. _See [LICENSE.md](https://github.com/nhsengland/nhs-r-reporting/blob/main/LICENSE) for more information._ 92 | 93 | 94 | 95 | ## About 96 | 97 | Project contact email: [@nhs.net](mailto:@nhs.net) 98 | 99 | To find out more about the [NHS England R Community](https://future.nhs.uk/NationalRCommunity/groupHome) visit our [project website](https://future.nhs.uk/NationalRCommunity/groupHome). 100 | 101 | 107 | 108 | -------------------------------------------------------------------------------- /docs/.gitignore: -------------------------------------------------------------------------------- 1 | /.quarto/ 2 | -------------------------------------------------------------------------------- /docs/_freeze/documentation/visualisation/execute-results/html.json: -------------------------------------------------------------------------------- 1 | { 2 | "hash": "2fe1d6be298d8a38a0735900f29953c7", 3 | "result": { 4 | "markdown": "---\ntitle: Visualising Data in R\nsubtitle: Common Charts and Plots using in the NHS\n---\n\n\n\n\n## Line Chart\n\n### ggplot (non-interactive)\n\n#### Packages used:\n```r\nlibrary(here)\nsource(here(\"utility\", \"nhs_style.R\")) # load nhsplot style\nlibrary(NHSRdatasets)\nlibrary(tidyverse)\n```\n\n\n\n\n::: {.cell}\n\n```{.r .cell-code}\n# filter dataset\ndf <- ae_attendances %>% \n filter(org_code == \"RQM\", type == 1)\n\n# make plot\nggplot(df, aes(x = period, y = attendances)) +\n geom_line(colour = \"#005EB8\", size = 1) +\n geom_hline(yintercept = 0,\n size = 1,\n colour=\"#333333\") + # bold line at x-axis\n nhs_style() + # apply nhsplot style\n ylim(c(0, max(df$attendances)+1000)) + # add space above line\n scale_y_continuous(labels = scales::comma) + # add 1000s comma format\n labs(title = \"Chelsea & Westminster Hospital\",\n x = \"Year\",\n y = \"A&E Attendances\")\n```\n\n::: {.cell-output-display}\n![](visualisation_files/figure-html/Example Line Chart-1.png){width=672}\n:::\n:::\n\n\n## Statistical Process Control (SPC)\n\nThe [NHSR Plot the Dots](https://github.com/nhs-r-community/NHSRplotthedots) package is built by the [NHS-R community](https://nhsrcommunity.com) to provide tools for drawing statistical process control (SPC) charts. The package supports the NHS England programme ['Making Data Count'](https://www.england.nhs.uk/publication/making-data-count/). The programme encourages boards, managers, and analyst teams to present data in ways that show change over time, and drive better understanding of indicators than 'RAG' (red, amber, green) rated reports often present.\n\n### Installation\n\n```r\n# install from CRAN\ninstall.packages(\"NHSRplotthedots\")\ninstall.packages(\"rmarkdown\")\n\n# Or install the development version from GitHub using {remotes} package:\n# install.packages(\"remotes\")\nremotes::install_github(\"https://github.com/nhs-r-community/NHSRplotthedots\", build_vignettes = TRUE)\n```\n\nThe help-files, and vignette within this package tell you more about the possible options for controlling the charts\n\n### Example Chart\n\nBelow is an example of the type of chart the package produces. The plot uses the `ae_attendances` dataset from the `{NHSRdatasets}` package and a bit of `{dplyr}` code to select some organisations.\n\n#### Packages used:\n```r\nlibrary(NHSRplotthedots)\nlibrary(NHSRdatasets)\nlibrary(tidyverse)\n```\n\n\n\n\n::: {.cell}\n\n```{.r .cell-code}\ndf <- ae_attendances %>% \n filter(org_code == \"RQM\", type == 1, period < as.Date(\"2018-04-01\"))\n\ndf %>%\n ptd_spc(value_field = breaches, date_field = period, improvement_direction = \"decrease\")\n```\n\n::: {.cell-output-display}\n![](visualisation_files/figure-html/Example SPC Chart-1.png){width=672}\n:::\n:::\n\n\n## Help Complete this page:\nWe are always looking for examples and best practice to complete this documentation. See [`Contribute to this site`](https://nhsengland.github.io/nhs-r-reporting/1.5-contribute.html) for details on how to add or amend a page on this site.\n\n### Proposed Content:\n- Bar Chart\n- Pyramid Chart\n- Multi-line Chart\n- Targets & Benchmarks\n- KPIs\n- Scatter Plot\n- Box Plot\n- Maps", 5 | "supporting": [ 6 | "visualisation_files" 7 | ], 8 | "filters": [ 9 | "rmarkdown/pagebreak.lua" 10 | ], 11 | "includes": {}, 12 | "engineDependencies": {}, 13 | "preserve": {}, 14 | "postProcess": true 15 | } 16 | } -------------------------------------------------------------------------------- /docs/_freeze/documentation/visualisation/figure-html/Example Line Chart-1.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/nhsengland/nhs-r-reporting/ad8dda5b6be6dbcb5768d6a16760d5c641f2f6f9/docs/_freeze/documentation/visualisation/figure-html/Example Line Chart-1.png -------------------------------------------------------------------------------- /docs/_freeze/documentation/visualisation/figure-html/Example SPC Chart-1.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/nhsengland/nhs-r-reporting/ad8dda5b6be6dbcb5768d6a16760d5c641f2f6f9/docs/_freeze/documentation/visualisation/figure-html/Example SPC Chart-1.png -------------------------------------------------------------------------------- /docs/_freeze/site_libs/Dygraph.Plugins.Crosshair-1.0/crosshair.js: -------------------------------------------------------------------------------- 1 | /** 2 | * @license 3 | * Copyright 2015 Petr Shevtsov (petr.shevtsov@gmail.com) 4 | * MIT-licensed (http://opensource.org/licenses/MIT) 5 | */ 6 | 7 | /*global Dygraph:false */ 8 | /*jshint globalstrict: true */ 9 | Dygraph.Plugins.Crosshair = (function() { 10 | "use strict"; 11 | 12 | /** 13 | * Creates the crosshair 14 | * 15 | * @constructor 16 | */ 17 | 18 | var crosshair = function(opt_options) { 19 | this.canvas_ = document.createElement("canvas"); 20 | opt_options = opt_options || {}; 21 | this.direction_ = opt_options.direction || null; 22 | }; 23 | 24 | crosshair.prototype.toString = function() { 25 | return "Crosshair Plugin"; 26 | }; 27 | 28 | /** 29 | * @param {Dygraph} g Graph instance. 30 | * @return {object.} Mapping of event names to callbacks. 31 | */ 32 | crosshair.prototype.activate = function(g) { 33 | g.graphDiv.appendChild(this.canvas_); 34 | 35 | return { 36 | select: this.select, 37 | deselect: this.deselect 38 | }; 39 | }; 40 | 41 | crosshair.prototype.select = function(e) { 42 | if (this.direction_ === null) { 43 | return; 44 | } 45 | 46 | var width = e.dygraph.width_; 47 | var height = e.dygraph.height_; 48 | this.canvas_.width = width; 49 | this.canvas_.height = height; 50 | this.canvas_.style.width = width + "px"; // for IE 51 | this.canvas_.style.height = height + "px"; // for IE 52 | 53 | var ctx = this.canvas_.getContext("2d"); 54 | ctx.clearRect(0, 0, width, height); 55 | ctx.strokeStyle = "rgba(0, 0, 0,0.3)"; 56 | ctx.beginPath(); 57 | 58 | var canvasx = Math.floor(e.dygraph.selPoints_[0].canvasx) + 0.5; // crisper rendering 59 | 60 | if (this.direction_ === "vertical" || this.direction_ === "both") { 61 | ctx.moveTo(canvasx, 0); 62 | ctx.lineTo(canvasx, height); 63 | } 64 | 65 | if (this.direction_ === "horizontal" || this.direction_ === "both") { 66 | for (var i = 0; i < e.dygraph.selPoints_.length; i++) { 67 | var canvasy = Math.floor(e.dygraph.selPoints_[i].canvasy) + 0.5; // crisper rendering 68 | ctx.moveTo(0, canvasy); 69 | ctx.lineTo(width, canvasy); 70 | } 71 | } 72 | 73 | ctx.stroke(); 74 | ctx.closePath(); 75 | }; 76 | 77 | crosshair.prototype.deselect = function(e) { 78 | var ctx = this.canvas_.getContext("2d"); 79 | ctx.clearRect(0, 0, this.canvas_.width, this.canvas_.height); 80 | }; 81 | 82 | crosshair.prototype.destroy = function() { 83 | this.canvas_ = null; 84 | }; 85 | 86 | return crosshair; 87 | })(); 88 | -------------------------------------------------------------------------------- /docs/_freeze/site_libs/collapsibleTree-0.1.6/collapsibleTree.css: -------------------------------------------------------------------------------- 1 | .collapsibleTree .node { 2 | cursor: pointer; 3 | } 4 | 5 | .collapsibleTree .node circle { 6 | fill: #fff; 7 | stroke: #000; 8 | } 9 | 10 | .collapsibleTree .node text { 11 | font: 10px sans-serif; 12 | } 13 | 14 | .collapsibleTree .link { 15 | fill: none; 16 | stroke: #ccc; 17 | stroke-width: 1.5px; 18 | } 19 | 20 | .collapsibleTree div.tooltip { 21 | position: absolute; 22 | text-align: center; 23 | padding: 3px; 24 | font: 10px sans-serif; 25 | background: #fff; 26 | border: 2px; 27 | border-radius: 8px; 28 | border-style: solid; 29 | pointer-events: none; 30 | } 31 | -------------------------------------------------------------------------------- /docs/_freeze/site_libs/collapsibleTree-0.1.6/d3-4.10.2/LICENSE: -------------------------------------------------------------------------------- 1 | Copyright 2010-2017 Mike Bostock 2 | All rights reserved. 3 | 4 | Redistribution and use in source and binary forms, with or without modification, 5 | are permitted provided that the following conditions are met: 6 | 7 | * Redistributions of source code must retain the above copyright notice, this 8 | list of conditions and the following disclaimer. 9 | 10 | * Redistributions in binary form must reproduce the above copyright notice, 11 | this list of conditions and the following disclaimer in the documentation 12 | and/or other materials provided with the distribution. 13 | 14 | * Neither the name of the author nor the names of contributors may be used to 15 | endorse or promote products derived from this software without specific prior 16 | written permission. 17 | 18 | THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS "AS IS" AND 19 | ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE IMPLIED 20 | WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE ARE 21 | DISCLAIMED. IN NO EVENT SHALL THE COPYRIGHT OWNER OR CONTRIBUTORS BE LIABLE FOR 22 | ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR CONSEQUENTIAL DAMAGES 23 | (INCLUDING, BUT NOT LIMITED TO, PROCUREMENT OF SUBSTITUTE GOODS OR SERVICES; 24 | LOSS OF USE, DATA, OR PROFITS; OR BUSINESS INTERRUPTION) HOWEVER CAUSED AND ON 25 | ANY THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT LIABILITY, OR TORT 26 | (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY OUT OF THE USE OF THIS 27 | SOFTWARE, EVEN IF ADVISED OF THE POSSIBILITY OF SUCH DAMAGE. 28 | -------------------------------------------------------------------------------- /docs/_freeze/site_libs/core-js-2.5.3/LICENSE: -------------------------------------------------------------------------------- 1 | Copyright (c) 2014-2017 Denis Pushkarev 2 | 3 | Permission is hereby granted, free of charge, to any person obtaining a copy 4 | of this software and associated documentation files (the "Software"), to deal 5 | in the Software without restriction, including without limitation the rights 6 | to use, copy, modify, merge, publish, distribute, sublicense, and/or sell 7 | copies of the Software, and to permit persons to whom the Software is 8 | furnished to do so, subject to the following conditions: 9 | 10 | The above copyright notice and this permission notice shall be included in 11 | all copies or substantial portions of the Software. 12 | 13 | THE SOFTWARE IS PROVIDED "AS IS", WITHOUT WARRANTY OF ANY KIND, EXPRESS OR 14 | IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF MERCHANTABILITY, 15 | FITNESS FOR A PARTICULAR PURPOSE AND NONINFRINGEMENT. IN NO EVENT SHALL THE 16 | AUTHORS OR COPYRIGHT HOLDERS BE LIABLE FOR ANY CLAIM, DAMAGES OR OTHER 17 | LIABILITY, WHETHER IN AN ACTION OF CONTRACT, TORT OR OTHERWISE, ARISING FROM, 18 | OUT OF OR IN CONNECTION WITH THE SOFTWARE OR THE USE OR OTHER DEALINGS IN 19 | THE SOFTWARE. 20 | -------------------------------------------------------------------------------- /docs/_freeze/site_libs/crosstalk-1.2.0/css/crosstalk.min.css: -------------------------------------------------------------------------------- 1 | .container-fluid.crosstalk-bscols{margin-left:-30px;margin-right:-30px;white-space:normal}body>.container-fluid.crosstalk-bscols{margin-left:auto;margin-right:auto}.crosstalk-input-checkboxgroup .crosstalk-options-group .crosstalk-options-column{display:inline-block;padding-right:12px;vertical-align:top}@media only screen and (max-width: 480px){.crosstalk-input-checkboxgroup .crosstalk-options-group .crosstalk-options-column{display:block;padding-right:inherit}}.crosstalk-input{margin-bottom:15px}.crosstalk-input .control-label{margin-bottom:0;vertical-align:middle}.crosstalk-input input[type="checkbox"]{margin:4px 0 0;margin-top:1px;line-height:normal}.crosstalk-input .checkbox{position:relative;display:block;margin-top:10px;margin-bottom:10px}.crosstalk-input .checkbox>label{padding-left:20px;margin-bottom:0;font-weight:400;cursor:pointer}.crosstalk-input .checkbox input[type="checkbox"],.crosstalk-input .checkbox-inline input[type="checkbox"]{position:absolute;margin-top:2px;margin-left:-20px}.crosstalk-input .checkbox+.checkbox{margin-top:-5px}.crosstalk-input .checkbox-inline{position:relative;display:inline-block;padding-left:20px;margin-bottom:0;font-weight:400;vertical-align:middle;cursor:pointer}.crosstalk-input .checkbox-inline+.checkbox-inline{margin-top:0;margin-left:10px} 2 | -------------------------------------------------------------------------------- /docs/_freeze/site_libs/crosstalk-1.2.0/scss/crosstalk.scss: -------------------------------------------------------------------------------- 1 | /* Adjust margins outwards, so column contents line up with the edges of the 2 | parent of container-fluid. */ 3 | .container-fluid.crosstalk-bscols { 4 | margin-left: -30px; 5 | margin-right: -30px; 6 | white-space: normal; 7 | } 8 | 9 | /* But don't adjust the margins outwards if we're directly under the body, 10 | i.e. we were the top-level of something at the console. */ 11 | body > .container-fluid.crosstalk-bscols { 12 | margin-left: auto; 13 | margin-right: auto; 14 | } 15 | 16 | .crosstalk-input-checkboxgroup .crosstalk-options-group .crosstalk-options-column { 17 | display: inline-block; 18 | padding-right: 12px; 19 | vertical-align: top; 20 | } 21 | 22 | @media only screen and (max-width:480px) { 23 | .crosstalk-input-checkboxgroup .crosstalk-options-group .crosstalk-options-column { 24 | display: block; 25 | padding-right: inherit; 26 | } 27 | } 28 | 29 | /* Relevant BS3 styles to make filter_checkbox() look reasonable without Bootstrap */ 30 | .crosstalk-input { 31 | margin-bottom: 15px; /* a la .form-group */ 32 | .control-label { 33 | margin-bottom: 0; 34 | vertical-align: middle; 35 | } 36 | input[type="checkbox"] { 37 | margin: 4px 0 0; 38 | margin-top: 1px; 39 | line-height: normal; 40 | } 41 | .checkbox { 42 | position: relative; 43 | display: block; 44 | margin-top: 10px; 45 | margin-bottom: 10px; 46 | } 47 | .checkbox > label{ 48 | padding-left: 20px; 49 | margin-bottom: 0; 50 | font-weight: 400; 51 | cursor: pointer; 52 | } 53 | .checkbox input[type="checkbox"], 54 | .checkbox-inline input[type="checkbox"] { 55 | position: absolute; 56 | margin-top: 2px; 57 | margin-left: -20px; 58 | } 59 | .checkbox + .checkbox { 60 | margin-top: -5px; 61 | } 62 | .checkbox-inline { 63 | position: relative; 64 | display: inline-block; 65 | padding-left: 20px; 66 | margin-bottom: 0; 67 | font-weight: 400; 68 | vertical-align: middle; 69 | cursor: pointer; 70 | } 71 | .checkbox-inline + .checkbox-inline { 72 | margin-top: 0; 73 | margin-left: 10px; 74 | } 75 | } 76 | -------------------------------------------------------------------------------- /docs/_freeze/site_libs/d3-4.10.2/LICENSE: -------------------------------------------------------------------------------- 1 | Copyright 2010-2017 Mike Bostock 2 | All rights reserved. 3 | 4 | Redistribution and use in source and binary forms, with or without modification, 5 | are permitted provided that the following conditions are met: 6 | 7 | * Redistributions of source code must retain the above copyright notice, this 8 | list of conditions and the following disclaimer. 9 | 10 | * Redistributions in binary form must reproduce the above copyright notice, 11 | this list of conditions and the following disclaimer in the documentation 12 | and/or other materials provided with the distribution. 13 | 14 | * Neither the name of the author nor the names of contributors may be used to 15 | endorse or promote products derived from this software without specific prior 16 | written permission. 17 | 18 | THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS "AS IS" AND 19 | ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE IMPLIED 20 | WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE ARE 21 | DISCLAIMED. IN NO EVENT SHALL THE COPYRIGHT OWNER OR CONTRIBUTORS BE LIABLE FOR 22 | ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR CONSEQUENTIAL DAMAGES 23 | (INCLUDING, BUT NOT LIMITED TO, PROCUREMENT OF SUBSTITUTE GOODS OR SERVICES; 24 | LOSS OF USE, DATA, OR PROFITS; OR BUSINESS INTERRUPTION) HOWEVER CAUSED AND ON 25 | ANY THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT LIABILITY, OR TORT 26 | (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY OUT OF THE USE OF THIS 27 | SOFTWARE, EVEN IF ADVISED OF THE POSSIBILITY OF SUCH DAMAGE. 28 | -------------------------------------------------------------------------------- /docs/_freeze/site_libs/datatables-css-0.0.0/datatables-crosstalk.css: -------------------------------------------------------------------------------- 1 | .dt-crosstalk-fade { 2 | opacity: 0.2; 3 | } 4 | 5 | html body div.DTS div.dataTables_scrollBody { 6 | background: none; 7 | } 8 | 9 | 10 | /* 11 | Fix https://github.com/rstudio/DT/issues/563 12 | If the `table.display` is set to "block" (e.g., pkgdown), the browser will display 13 | datatable objects strangely. The search panel and the page buttons will still be 14 | in full-width but the table body will be "compact" and shorter. 15 | In therory, having this attributes will affect `dom="t"` 16 | with `display: block` users. But in reality, there should be no one. 17 | We may remove the below lines in the future if the upstream agree to have this there. 18 | See https://github.com/DataTables/DataTablesSrc/issues/160 19 | */ 20 | 21 | table.dataTable { 22 | display: table; 23 | } 24 | -------------------------------------------------------------------------------- /docs/_freeze/site_libs/dt-core-1.12.1/css/jquery.dataTables.extra.css: -------------------------------------------------------------------------------- 1 | /* Selected rows/cells */ 2 | table.dataTable tr.selected td, table.dataTable td.selected { 3 | background-color: #b0bed9 !important; 4 | } 5 | /* In case of scrollX/Y or FixedHeader */ 6 | .dataTables_scrollBody .dataTables_sizing { 7 | visibility: hidden; 8 | } 9 | 10 | /* The datatables' theme CSS file doesn't define 11 | the color but with white background. It leads to an issue that 12 | when the HTML's body color is set to 'white', the user can't 13 | see the text since the background is white. One case happens in the 14 | RStudio's IDE when inline viewing the DT table inside an Rmd file, 15 | if the IDE theme is set to "Cobalt". 16 | 17 | See https://github.com/rstudio/DT/issues/447 for more info 18 | 19 | This fixes should have little side-effects because all the other elements 20 | of the default theme use the #333 font color. 21 | 22 | TODO: The upstream may use relative colors for both the table background 23 | and the color. It means the table can display well without this patch 24 | then. At that time, we need to remove the below CSS attributes. 25 | */ 26 | div.datatables { 27 | color: #333; 28 | } 29 | -------------------------------------------------------------------------------- /docs/_freeze/site_libs/dt-ext-buttons-1.12.1/js/buttons.colVis.min.js: -------------------------------------------------------------------------------- 1 | /*! 2 | Column visibility buttons for Buttons and DataTables. 3 | 2016 SpryMedia Ltd - datatables.net/license 4 | */ 5 | (function(h){"function"===typeof define&&define.amd?define(["jquery","datatables.net","datatables.net-buttons"],function(e){return h(e,window,document)}):"object"===typeof exports?module.exports=function(e,g){e||(e=window);g&&g.fn.dataTable||(g=require("datatables.net")(e,g).$);g.fn.dataTable.Buttons||require("datatables.net-buttons")(e,g);return h(g,e,e.document)}:h(jQuery,window,document)})(function(h,e,g,l){e=h.fn.dataTable;h.extend(e.ext.buttons,{colvis:function(b,a){var c=null,d={extend:"collection", 6 | init:function(f,k){c=k},text:function(f){return f.i18n("buttons.colvis","Column visibility")},className:"buttons-colvis",closeButton:!1,buttons:[{extend:"columnsToggle",columns:a.columns,columnText:a.columnText}]};b.on("column-reorder.dt"+a.namespace,function(f,k,m){b.button(null,b.button(null,c).node()).collectionRebuild([{extend:"columnsToggle",columns:a.columns,columnText:a.columnText}])});return d},columnsToggle:function(b,a){return b.columns(a.columns).indexes().map(function(c){return{extend:"columnToggle", 7 | columns:c,columnText:a.columnText}}).toArray()},columnToggle:function(b,a){return{extend:"columnVisibility",columns:a.columns,columnText:a.columnText}},columnsVisibility:function(b,a){return b.columns(a.columns).indexes().map(function(c){return{extend:"columnVisibility",columns:c,visibility:a.visibility,columnText:a.columnText}}).toArray()},columnVisibility:{columns:l,text:function(b,a,c){return c._columnText(b,c)},className:"buttons-columnVisibility",action:function(b,a,c,d){b=a.columns(d.columns); 8 | a=b.visible();b.visible(d.visibility!==l?d.visibility:!(a.length&&a[0]))},init:function(b,a,c){var d=this;a.attr("data-cv-idx",c.columns);b.on("column-visibility.dt"+c.namespace,function(f,k){k.bDestroying||k.nTable!=b.settings()[0].nTable||d.active(b.column(c.columns).visible())}).on("column-reorder.dt"+c.namespace,function(f,k,m){c.destroying||1!==b.columns(c.columns).count()||(d.text(c._columnText(b,c)),d.active(b.column(c.columns).visible()))});this.active(b.column(c.columns).visible())},destroy:function(b, 9 | a,c){b.off("column-visibility.dt"+c.namespace).off("column-reorder.dt"+c.namespace)},_columnText:function(b,a){var c=b.column(a.columns).index(),d=b.settings()[0].aoColumns[c].sTitle;d||(d=b.column(c).header().innerHTML);d=d.replace(/\n/g," ").replace(//gi," ").replace(//g,"").replace(//g,"").replace(/<.*?>/g,"").replace(/^\s+|\s+$/g,"");return a.columnText?a.columnText(b,c,d):d}},colvisRestore:{className:"buttons-colvisRestore",text:function(b){return b.i18n("buttons.colvisRestore", 10 | "Restore visibility")},init:function(b,a,c){c._visOriginal=b.columns().indexes().map(function(d){return b.column(d).visible()}).toArray()},action:function(b,a,c,d){a.columns().every(function(f){f=a.colReorder&&a.colReorder.transpose?a.colReorder.transpose(f,"toOriginal"):f;this.visible(d._visOriginal[f])})}},colvisGroup:{className:"buttons-colvisGroup",action:function(b,a,c,d){a.columns(d.show).visible(!0,!1);a.columns(d.hide).visible(!1,!1);a.columns.adjust()},show:[],hide:[]}});return e.Buttons}); 11 | -------------------------------------------------------------------------------- /docs/_freeze/site_libs/dt-ext-buttons-1.12.1/js/buttons.print.min.js: -------------------------------------------------------------------------------- 1 | /*! 2 | Print button for Buttons and DataTables. 3 | 2016 SpryMedia Ltd - datatables.net/license 4 | */ 5 | (function(b){"function"===typeof define&&define.amd?define(["jquery","datatables.net","datatables.net-buttons"],function(d){return b(d,window,document)}):"object"===typeof exports?module.exports=function(d,h){d||(d=window);h&&h.fn.dataTable||(h=require("datatables.net")(d,h).$);h.fn.dataTable.Buttons||require("datatables.net-buttons")(d,h);return b(h,d,d.document)}:b(jQuery,window,document)})(function(b,d,h,y){var u=b.fn.dataTable,n=h.createElement("a"),v=function(a){n.href=a;a=n.host;-1===a.indexOf("/")&& 6 | 0!==n.pathname.indexOf("/")&&(a+="/");return n.protocol+"//"+a+n.pathname+n.search};u.ext.buttons.print={className:"buttons-print",text:function(a){return a.i18n("buttons.print","Print")},action:function(a,e,p,k){a=e.buttons.exportData(b.extend({decodeEntities:!1},k.exportOptions));p=e.buttons.exportInfo(k);var w=e.columns(k.exportOptions.columns).flatten().map(function(f){return e.settings()[0].aoColumns[e.column(f).index()].sClass}).toArray(),r=function(f,g){for(var x="",l=0,z=f.length;l"+(null===f[l]||f[l]===y?"":f[l])+"";return x+""},m='';k.header&&(m+=""+r(a.header,"th")+"");m+="";for(var t=0,A=a.body.length;t";k.footer&&a.footer&&(m+=""+r(a.footer,"th")+"");m+="
";var c=d.open("","");if(c){c.document.close();var q=""+p.title+"";b("style, link").each(function(){var f=q,g=b(this).clone()[0]; 8 | "link"===g.nodeName.toLowerCase()&&(g.href=v(g.href));q=f+g.outerHTML});try{c.document.head.innerHTML=q}catch(f){b(c.document.head).html(q)}c.document.body.innerHTML="

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";b(c.document.body).addClass("dt-print-view");b("img",c.document.body).each(function(f,g){g.setAttribute("src",v(g.getAttribute("src")))});k.customize&&k.customize(c,k,e);a=function(){k.autoPrint&&(c.print(),c.close())};navigator.userAgent.match(/Trident\/\d.\d/)? 9 | a():c.setTimeout(a,1E3)}else e.buttons.info(e.i18n("buttons.printErrorTitle","Unable to open print view"),e.i18n("buttons.printErrorMsg","Please allow popups in your browser for this site to be able to view the print view."),5E3)},title:"*",messageTop:"*",messageBottom:"*",exportOptions:{},header:!0,footer:!1,autoPrint:!0,customize:null};return u.Buttons}); 10 | -------------------------------------------------------------------------------- /docs/_freeze/site_libs/dygraphs-1.1.1/dygraph.css: -------------------------------------------------------------------------------- 1 | 2 | div .dygraphs input[type="text"] { 3 | width: 25px; 4 | } 5 | 6 | div .qt .dygraph-axis-label { 7 | font-size: 11px; 8 | } -------------------------------------------------------------------------------- /docs/_freeze/site_libs/dygraphs-1.1.1/shapes.js: -------------------------------------------------------------------------------- 1 | /** 2 | * @license 3 | * Copyright 2011 Dan Vanderkam (danvdk@gmail.com) 4 | * MIT-licensed (http://opensource.org/licenses/MIT) 5 | */ 6 | 7 | /** 8 | * @fileoverview 9 | * Including this file will add several additional shapes to Dygraph.Circles 10 | * which can be passed to drawPointCallback. 11 | * See tests/custom-circles.html for usage. 12 | */ 13 | 14 | (function() { 15 | 16 | /** 17 | * @param {!CanvasRenderingContext2D} ctx the canvas context 18 | * @param {number} sides the number of sides in the shape. 19 | * @param {number} radius the radius of the image. 20 | * @param {number} cx center x coordate 21 | * @param {number} cy center y coordinate 22 | * @param {number=} rotationRadians the shift of the initial angle, in radians. 23 | * @param {number=} delta the angle shift for each line. If missing, creates a 24 | * regular polygon. 25 | */ 26 | var regularShape = function( 27 | ctx, sides, radius, cx, cy, rotationRadians, delta) { 28 | rotationRadians = rotationRadians || 0; 29 | delta = delta || Math.PI * 2 / sides; 30 | 31 | ctx.beginPath(); 32 | var initialAngle = rotationRadians; 33 | var angle = initialAngle; 34 | 35 | var computeCoordinates = function() { 36 | var x = cx + (Math.sin(angle) * radius); 37 | var y = cy + (-Math.cos(angle) * radius); 38 | return [x, y]; 39 | }; 40 | 41 | var initialCoordinates = computeCoordinates(); 42 | var x = initialCoordinates[0]; 43 | var y = initialCoordinates[1]; 44 | ctx.moveTo(x, y); 45 | 46 | for (var idx = 0; idx < sides; idx++) { 47 | angle = (idx == sides - 1) ? initialAngle : (angle + delta); 48 | var coords = computeCoordinates(); 49 | ctx.lineTo(coords[0], coords[1]); 50 | } 51 | ctx.fill(); 52 | ctx.stroke(); 53 | }; 54 | 55 | /** 56 | * TODO(danvk): be more specific on the return type. 57 | * @param {number} sides 58 | * @param {number=} rotationRadians 59 | * @param {number=} delta 60 | * @return {Function} 61 | * @private 62 | */ 63 | var shapeFunction = function(sides, rotationRadians, delta) { 64 | return function(g, name, ctx, cx, cy, color, radius) { 65 | ctx.strokeStyle = color; 66 | ctx.fillStyle = "white"; 67 | regularShape(ctx, sides, radius, cx, cy, rotationRadians, delta); 68 | }; 69 | }; 70 | 71 | var customCircles = { 72 | TRIANGLE : shapeFunction(3), 73 | SQUARE : shapeFunction(4, Math.PI / 4), 74 | DIAMOND : shapeFunction(4), 75 | PENTAGON : shapeFunction(5), 76 | HEXAGON : shapeFunction(6), 77 | CIRCLE : function(g, name, ctx, cx, cy, color, radius) { 78 | ctx.beginPath(); 79 | ctx.strokeStyle = color; 80 | ctx.fillStyle = "white"; 81 | ctx.arc(cx, cy, radius, 0, 2 * Math.PI, false); 82 | ctx.fill(); 83 | ctx.stroke(); 84 | }, 85 | STAR : shapeFunction(5, 0, 4 * Math.PI / 5), 86 | PLUS : function(g, name, ctx, cx, cy, color, radius) { 87 | ctx.strokeStyle = color; 88 | 89 | ctx.beginPath(); 90 | ctx.moveTo(cx + radius, cy); 91 | ctx.lineTo(cx - radius, cy); 92 | ctx.closePath(); 93 | ctx.stroke(); 94 | 95 | ctx.beginPath(); 96 | ctx.moveTo(cx, cy + radius); 97 | ctx.lineTo(cx, cy - radius); 98 | ctx.closePath(); 99 | ctx.stroke(); 100 | }, 101 | EX : function(g, name, ctx, cx, cy, color, radius) { 102 | ctx.strokeStyle = color; 103 | 104 | ctx.beginPath(); 105 | ctx.moveTo(cx + radius, cy + radius); 106 | ctx.lineTo(cx - radius, cy - radius); 107 | ctx.closePath(); 108 | ctx.stroke(); 109 | 110 | ctx.beginPath(); 111 | ctx.moveTo(cx + radius, cy - radius); 112 | ctx.lineTo(cx - radius, cy + radius); 113 | ctx.closePath(); 114 | ctx.stroke(); 115 | } 116 | }; 117 | 118 | for (var k in customCircles) { 119 | if (!customCircles.hasOwnProperty(k)) continue; 120 | Dygraph.Circles[k] = customCircles[k]; 121 | } 122 | 123 | })(); 124 | -------------------------------------------------------------------------------- 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Voogdt 3 | License: MIT 4 | Version: 1.0 5 | */ 6 | 7 | /* Marker setup */ 8 | .awesome-marker { 9 | background: url('images/markers-soft.png') no-repeat 0 0; 10 | width: 35px; 11 | height: 46px; 12 | position:absolute; 13 | left:0; 14 | top:0; 15 | display: block; 16 | text-align: center; 17 | } 18 | 19 | .awesome-marker-shadow { 20 | background: url('images/markers-shadow.png') no-repeat 0 0; 21 | width: 36px; 22 | height: 16px; 23 | } 24 | 25 | /* Retina displays */ 26 | @media (min--moz-device-pixel-ratio: 1.5),(-o-min-device-pixel-ratio: 3/2), 27 | (-webkit-min-device-pixel-ratio: 1.5),(min-device-pixel-ratio: 1.5),(min-resolution: 1.5dppx) { 28 | .awesome-marker { 29 | background-image: url('images/markers-soft@2x.png'); 30 | background-size: 720px 92px; 31 | } 32 | .awesome-marker-shadow { 33 | background-image: url('images/markers-shadow@2x.png'); 34 | background-size: 35px 16px; 35 | } 36 | } 37 | 38 | .awesome-marker i { 39 | color: #333; 40 | margin-top: 10px; 41 | display: inline-block; 42 | font-size: 14px; 43 | } 44 | 45 | .awesome-marker .icon-white { 46 | color: #fff; 47 | } 48 | 49 | /* Colors */ 50 | .awesome-marker-icon-red { 51 | background-position: 0 0; 52 | } 53 | 54 | .awesome-marker-icon-darkred { 55 | background-position: -180px 0; 56 | } 57 | 58 | .awesome-marker-icon-lightred { 59 | background-position: -360px 0; 60 | } 61 | 62 | .awesome-marker-icon-orange { 63 | background-position: -36px 0; 64 | } 65 | 66 | .awesome-marker-icon-beige { 67 | background-position: -396px 0; 68 | } 69 | 70 | .awesome-marker-icon-green { 71 | background-position: -72px 0; 72 | } 73 | 74 | .awesome-marker-icon-darkgreen { 75 | background-position: -252px 0; 76 | } 77 | 78 | .awesome-marker-icon-lightgreen { 79 | background-position: -432px 0; 80 | } 81 | 82 | .awesome-marker-icon-blue { 83 | background-position: -108px 0; 84 | } 85 | 86 | .awesome-marker-icon-darkblue { 87 | background-position: -216px 0; 88 | } 89 | 90 | .awesome-marker-icon-lightblue { 91 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Voogdt 3 | License: MIT 4 | Version: 1.0 5 | */ 6 | 7 | /* Marker setup */ 8 | .awesome-marker { 9 | background: url('images/markers-soft.png') no-repeat 0 0; 10 | width: 35px; 11 | height: 46px; 12 | position:absolute; 13 | left:0; 14 | top:0; 15 | display: block; 16 | text-align: center; 17 | } 18 | 19 | .awesome-marker-shadow { 20 | background: url('images/markers-shadow.png') no-repeat 0 0; 21 | width: 36px; 22 | height: 16px; 23 | } 24 | 25 | /* Retina displays */ 26 | @media (min--moz-device-pixel-ratio: 1.5),(-o-min-device-pixel-ratio: 3/2), 27 | (-webkit-min-device-pixel-ratio: 1.5),(min-device-pixel-ratio: 1.5),(min-resolution: 1.5dppx) { 28 | .awesome-marker { 29 | background-image: url('images/markers-soft@2x.png'); 30 | background-size: 720px 92px; 31 | } 32 | .awesome-marker-shadow { 33 | background-image: url('images/markers-shadow@2x.png'); 34 | background-size: 35px 16px; 35 | } 36 | } 37 | 38 | .awesome-marker i { 39 | color: #333; 40 | margin-top: 10px; 41 | display: inline-block; 42 | font-size: 14px; 43 | } 44 | 45 | .awesome-marker .icon-white { 46 | color: #fff; 47 | } 48 | 49 | /* Colors */ 50 | .awesome-marker-icon-red { 51 | background-position: 0 0; 52 | } 53 | 54 | .awesome-marker-icon-darkred { 55 | background-position: -180px 0; 56 | } 57 | 58 | .awesome-marker-icon-lightred { 59 | background-position: -360px 0; 60 | } 61 | 62 | .awesome-marker-icon-orange { 63 | background-position: -36px 0; 64 | } 65 | 66 | .awesome-marker-icon-beige { 67 | background-position: -396px 0; 68 | } 69 | 70 | .awesome-marker-icon-green { 71 | background-position: -72px 0; 72 | } 73 | 74 | .awesome-marker-icon-darkgreen { 75 | background-position: -252px 0; 76 | } 77 | 78 | .awesome-marker-icon-lightgreen { 79 | background-position: -432px 0; 80 | } 81 | 82 | .awesome-marker-icon-blue { 83 | background-position: -108px 0; 84 | } 85 | 86 | .awesome-marker-icon-darkblue { 87 | background-position: -216px 0; 88 | } 89 | 90 | .awesome-marker-icon-lightblue { 91 | background-position: -468px 0; 92 | } 93 | 94 | .awesome-marker-icon-purple { 95 | background-position: -144px 0; 96 | } 97 | 98 | .awesome-marker-icon-darkpurple { 99 | background-position: -288px 0; 100 | } 101 | 102 | .awesome-marker-icon-pink { 103 | background-position: -504px 0; 104 | } 105 | 106 | .awesome-marker-icon-cadetblue { 107 | background-position: -324px 0; 108 | } 109 | 110 | .awesome-marker-icon-white { 111 | background-position: -576px 0; 112 | } 113 | 114 | .awesome-marker-icon-gray { 115 | background-position: -648px 0; 116 | } 117 | 118 | .awesome-marker-icon-lightgray { 119 | background-position: -612px 0; 120 | } 121 | 122 | .awesome-marker-icon-black { 123 | background-position: -682px 0; 124 | } 125 | 126 | .awesome-marker-square { 127 | background-position-y: -46px; 128 | } 129 | -------------------------------------------------------------------------------- /docs/_freeze/site_libs/leaflet-awesomemarkers-2.0.3/leaflet.awesome-markers.min.js: -------------------------------------------------------------------------------- 1 | (function(window,document,undefined){"use strict";L.AwesomeMarkers={};L.AwesomeMarkers.version="2.0.1";L.AwesomeMarkers.Icon=L.Icon.extend({options:{iconSize:[35,45],iconAnchor:[17,42],popupAnchor:[1,-32],shadowAnchor:[10,12],shadowSize:[36,16],className:"awesome-marker",prefix:"glyphicon",spinClass:"fa-spin",extraClasses:"",icon:"home",markerColor:"blue",iconColor:"white",iconRotate:0,font:"monospace"},initialize:function(options){options=L.Util.setOptions(this,options)},createIcon:function(){var div=document.createElement("div"),options=this.options;if(options.icon){div.innerHTML=this._createInner()}if(options.bgPos){div.style.backgroundPosition=-options.bgPos.x+"px "+-options.bgPos.y+"px"}this._setIconStyles(div,"icon-"+options.markerColor);return div},_createInner:function(){var iconClass,iconSpinClass="",iconColorClass="",iconColorStyle="",options=this.options;if(!options.prefix||options.icon.slice(0,options.prefix.length+1)===options.prefix+"-"){iconClass=options.icon}else{iconClass=options.prefix+"-"+options.icon}if(options.spin&&typeof options.spinClass==="string"){iconSpinClass=options.spinClass}if(options.iconColor){if((options.iconColor==="white"||options.iconColor==="black")&&options.prefix!=="fa"){iconColorClass="icon-"+options.iconColor}else if(options.prefix==="fa"&&options.iconColor==="white"){iconColorClass="fa-inverse"}else{iconColorStyle="color: "+options.iconColor+";"}}if(options.font&&options.text){iconColorStyle+="font-family: "+options.font+";"}if(options.iconRotate&&options.iconRotate!==0){iconColorStyle+="-webkit-transform: rotate("+options.iconRotate+"deg);";iconColorStyle+="-moz-transform: rotate("+options.iconRotate+"deg);";iconColorStyle+="-o-transform: rotate("+options.iconRotate+"deg);";iconColorStyle+="-ms-transform: rotate("+options.iconRotate+"deg);";iconColorStyle+="transform: rotate("+options.iconRotate+"deg);"}if(options.text){return""+options.text+""}return""},_setIconStyles:function(img,name){var options=this.options,size=L.point(options[name==="shadow"?"shadowSize":"iconSize"]),anchor;if(name==="shadow"){anchor=L.point(options.shadowAnchor||options.iconAnchor)}else{anchor=L.point(options.iconAnchor)}if(!anchor&&size){anchor=size.divideBy(2,true)}img.className="awesome-marker-"+name+" "+options.className;if(anchor){img.style.marginLeft=-anchor.x+"px";img.style.marginTop=-anchor.y+"px"}if(size){img.style.width=size.x+"px";img.style.height=size.y+"px"}},createShadow:function(){var div=document.createElement("div");this._setIconStyles(div,"shadow");return div}});L.AwesomeMarkers.icon=function(options){return new L.AwesomeMarkers.Icon(options)}})(this,document); 2 | -------------------------------------------------------------------------------- /docs/_freeze/site_libs/leaflet-providers-plugin-2.1.1/leaflet-providers-plugin.js: -------------------------------------------------------------------------------- 1 | LeafletWidget.methods.addProviderTiles = function(provider, layerId, group, options) { 2 | this.layerManager.addLayer(L.tileLayer.provider(provider, options), "tile", layerId, group); 3 | }; 4 | -------------------------------------------------------------------------------- /docs/_freeze/site_libs/leafletfix-1.0.0/leafletfix.css: -------------------------------------------------------------------------------- 1 | /* Work around CSS properties introduced on img by bootstrap */ 2 | img.leaflet-tile { 3 | padding: 0; 4 | margin: 0; 5 | border-radius: 0; 6 | border: none; 7 | } 8 | .info { 9 | padding: 6px 8px; 10 | font: 14px/16px Arial, Helvetica, sans-serif; 11 | background: white; 12 | background: rgba(255,255,255,0.8); 13 | box-shadow: 0 0 15px rgba(0,0,0,0.2); 14 | border-radius: 5px; 15 | } 16 | .legend { 17 | line-height: 18px; 18 | color: #555; 19 | } 20 | .legend svg text { 21 | fill: #555; 22 | } 23 | .legend svg line { 24 | stroke: #555; 25 | } 26 | .legend i { 27 | width: 18px; 28 | height: 18px; 29 | margin-right: 4px; 30 | opacity: 0.7; 31 | display: inline-block; 32 | vertical-align: top; 33 | /*For IE 7*/ 34 | zoom: 1; 35 | *display: inline; 36 | } 37 | -------------------------------------------------------------------------------- /docs/_freeze/site_libs/moment-fquarter-1.0.0/moment-fquarter.min.js: -------------------------------------------------------------------------------- 1 | (function(){function n(n){return n.fn.fquarter=function(n){var u=this.lang()._quarter||"Q",t={},r,i=null;return n=n||4,n>1?(r=this.subtract("months",n-1),i=r.clone().add("years",1)):r=this,t.quarter=Math.ceil((r.month()+1)/3),t.year=r.year(),t.nextYear=i?i.year():i,t.toString=function(){var n=u+t.quarter+" "+t.year;return i?n+"/"+i.format("YY"):n},t},n}typeof define=="function"&&define.amd?define("moment-fquarter",["moment"],n):typeof module!="undefined"?module.exports=n(require("moment")):typeof window!="undefined"&&window.moment&&n(window.moment)}).apply(this); -------------------------------------------------------------------------------- /docs/_freeze/site_libs/nouislider-7.0.10/jquery.nouislider.min.css: -------------------------------------------------------------------------------- 1 | /*! noUiSlider - 7.0.10 - 2015-03-17 17:30:22 */ 2 | 3 | 4 | .noUi-target,.noUi-target *{-webkit-touch-callout:none;-webkit-user-select:none;-ms-touch-action:none;-ms-user-select:none;-moz-user-select:none;-moz-box-sizing:border-box;box-sizing:border-box}.noUi-target{position:relative;direction:ltr}.noUi-base{width:100%;height:100%;position:relative}.noUi-origin{position:absolute;right:0;top:0;left:0;bottom:0}.noUi-handle{position:relative;z-index:1}.noUi-stacking .noUi-handle{z-index:10}.noUi-state-tap .noUi-origin{-webkit-transition:left .3s,top .3s;transition:left .3s,top .3s}.noUi-state-drag *{cursor:inherit!important}.noUi-base{-webkit-transform:translate3d(0,0,0);transform:translate3d(0,0,0)}.noUi-horizontal{height:10px}.noUi-horizontal .noUi-handle{width:24px;height:18px;left:-12px;top:-6px}.noUi-vertical{width:10px}.noUi-vertical .noUi-handle{width:18px;height:24px;left:-5px;top:-12px}.noUi-background{background:#FAFAFA;box-shadow:inset 0 1px 1px #f0f0f0}.noUi-connect{background:#3FB8AF;box-shadow:inset 0 0 3px rgba(51,51,51,.45);-webkit-transition:background 450ms;transition:background 450ms}.noUi-origin{border-radius:2px}.noUi-target{border-radius:4px;border:1px solid #D3D3D3;box-shadow:inset 0 1px 1px #F0F0F0,0 3px 6px -5px #BBB}.noUi-target.noUi-connect{box-shadow:inset 0 0 3px rgba(51,51,51,.45),0 3px 6px -5px #BBB}.noUi-dragable{cursor:w-resize}.noUi-vertical .noUi-base{height:135px;}.noUi-vertical .noUi-dragable{cursor:n-resize}.noUi-handle{border:1px solid #D9D9D9;border-radius:3px;background:#FFF;cursor:default;box-shadow:inset 0 0 1px #FFF,inset 0 1px 7px #EBEBEB,0 3px 6px -3px #BBB}.noUi-active{box-shadow:inset 0 0 1px #FFF,inset 0 1px 7px #DDD,0 3px 6px -3px #BBB}.noUi-handle:after,.noUi-handle:before{content:"";display:block;position:absolute;height:9px;width:1px;background:#E8E7E6;left:9px;top:3.5px}.noUi-handle:after{left:12px}.noUi-vertical .noUi-handle:after,.noUi-vertical .noUi-handle:before{width:9px;height:1px;left:3.5px;top:9px}.noUi-vertical .noUi-handle:after{top:12px}[disabled] .noUi-connect,[disabled].noUi-connect{background:#B8B8B8}[disabled] .noUi-handle{cursor:not-allowed} 5 | -------------------------------------------------------------------------------- /docs/_freeze/site_libs/plotly-htmlwidgets-css-2.11.1/plotly-htmlwidgets.css: -------------------------------------------------------------------------------- 1 | /* 2 | just here so that plotly works 3 | correctly with ioslides. 4 | see https://github.com/ropensci/plotly/issues/463 5 | */ 6 | 7 | slide:not(.current) .plotly.html-widget{ 8 | display: none; 9 | } 10 | -------------------------------------------------------------------------------- /docs/_freeze/site_libs/react-17.0.0/LICENSE.txt: -------------------------------------------------------------------------------- 1 | MIT License 2 | 3 | Copyright (c) 2013-present, Facebook, Inc. 4 | 5 | Permission is hereby granted, free of charge, to any person obtaining a copy 6 | of this software and associated documentation files (the "Software"), to deal 7 | in the Software without restriction, including without limitation the rights 8 | to use, copy, modify, merge, publish, distribute, sublicense, and/or sell 9 | copies of the Software, and to permit persons to whom the Software is 10 | furnished to do so, subject to the following conditions: 11 | 12 | The above copyright notice and this permission notice shall be included in all 13 | copies or substantial portions of the Software. 14 | 15 | THE SOFTWARE IS PROVIDED "AS IS", WITHOUT WARRANTY OF ANY KIND, EXPRESS OR 16 | IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF MERCHANTABILITY, 17 | FITNESS FOR A PARTICULAR PURPOSE AND NONINFRINGEMENT. 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Feross Aboukhadijeh */ 17 | 18 | /** @license React v0.20.2 19 | * scheduler.production.min.js 20 | * 21 | * Copyright (c) Facebook, Inc. and its affiliates. 22 | * 23 | * This source code is licensed under the MIT license found in the 24 | * LICENSE file in the root directory of this source tree. 25 | */ 26 | 27 | /** @license React v17.0.2 28 | * react-dom-server.node.production.min.js 29 | * 30 | * Copyright (c) Facebook, Inc. and its affiliates. 31 | * 32 | * This source code is licensed under the MIT license found in the 33 | * LICENSE file in the root directory of this source tree. 34 | */ 35 | 36 | /** @license React v17.0.2 37 | * react-dom.production.min.js 38 | * 39 | * Copyright (c) Facebook, Inc. and its affiliates. 40 | * 41 | * This source code is licensed under the MIT license found in the 42 | * LICENSE file in the root directory of this source tree. 43 | */ 44 | 45 | /** @license React v17.0.2 46 | * react.production.min.js 47 | * 48 | * Copyright (c) Facebook, Inc. and its affiliates. 49 | * 50 | * This source code is licensed under the MIT license found in the 51 | * LICENSE file in the root directory of this source tree. 52 | */ 53 | -------------------------------------------------------------------------------- /docs/_freeze/site_libs/reactable-0.4.3/reactable.yaml: -------------------------------------------------------------------------------- 1 | dependencies: 2 | - name: reactable 3 | version: 0.4.3 4 | src: htmlwidgets 5 | stylesheet: reactable.css 6 | -------------------------------------------------------------------------------- /docs/_freeze/site_libs/rstudio_leaflet-1.3.1/images/1px.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/nhsengland/nhs-r-reporting/ad8dda5b6be6dbcb5768d6a16760d5c641f2f6f9/docs/_freeze/site_libs/rstudio_leaflet-1.3.1/images/1px.png -------------------------------------------------------------------------------- /docs/_freeze/site_libs/rstudio_leaflet-1.3.1/rstudio_leaflet.css: -------------------------------------------------------------------------------- 1 | .leaflet-tooltip.leaflet-tooltip-text-only, 2 | .leaflet-tooltip.leaflet-tooltip-text-only:before, 3 | .leaflet-tooltip.leaflet-tooltip-text-only:after { 4 | background: none; 5 | border: none; 6 | box-shadow: none; 7 | } 8 | 9 | .leaflet-tooltip.leaflet-tooltip-text-only.leaflet-tooltip-left { 10 | margin-left: 5px; 11 | } 12 | 13 | .leaflet-tooltip.leaflet-tooltip-text-only.leaflet-tooltip-right { 14 | margin-left: -5px; 15 | } 16 | 17 | .leaflet-tooltip:after { 18 | border-right: 6px solid transparent; 19 | /* right: -16px; */ 20 | } 21 | 22 | .leaflet-popup-pane .leaflet-popup-tip-container { 23 | /* when the tooltip container is clicked, it is closed */ 24 | pointer-events: all; 25 | /* tooltips should display the "hand" icon, just like .leaflet-interactive*/ 26 | cursor: pointer; 27 | } 28 | 29 | /* have the widget be displayed in the right 'layer' */ 30 | .leaflet-map-pane { 31 | z-index: auto; 32 | } 33 | 34 | /* Add missing rule from leaflet for img. 35 | This complete existing leaflet.css. 36 | Fix for https://github.com/rstudio/rmarkdown/issues/1949 */ 37 | .leaflet-container .leaflet-right-pane img, 38 | .leaflet-container .leaflet-left-pane img { 39 | max-width: none !important; 40 | max-height: none !important; 41 | } 42 | -------------------------------------------------------------------------------- /docs/_freeze/site_libs/wordcloud2-0.0.1/wordcloud.css: -------------------------------------------------------------------------------- 1 | 2 | #wcLabel { 3 | position: absolute; 4 | border: 2px solid #fff; 5 | box-shadow: 0 0 4px 0 #008; 6 | padding: 2px; 7 | /*margin: -4px 0 0 -4px;*/ 8 | pointer-events: none; } 9 | 10 | #wcSpan { 11 | position: absolute; 12 | top: 100%; 13 | left: 0; 14 | background-color: rgba(255, 255, 255, 0.8); 15 | color: #333; 16 | margin-top: 6px; 17 | padding: 0 0.5em; 18 | border-radius: 0.5em; 19 | white-space: nowrap; } 20 | -------------------------------------------------------------------------------- /docs/_freeze/site_libs/wordcloud2-binding-0.2.1/wordcloud2.js: -------------------------------------------------------------------------------- 1 | HTMLWidgets.widget({ 2 | 3 | name: 'wordcloud2', 4 | 5 | type: 'output', 6 | 7 | initialize: function(el, width, height) { 8 | var newCanvas = document.createElement("canvas"); 9 | newCanvas.height = height; 10 | newCanvas.width = width; 11 | newCanvas.id = "canvas"; 12 | 13 | el.appendChild(newCanvas); 14 | newlabel(el); 15 | return(el.firstChild); 16 | }, 17 | renderValue: function(el, x, instance) { 18 | // parse gexf data 19 | listData=[]; 20 | for(var i=0; i% \n filter(org_code == \"RQM\", type == 1, period < as.Date(\"2018-04-01\"))\n\ndf %>%\n ptd_spc(value_field = breaches, date_field = period, improvement_direction = \"decrease\")\n```\n\n::: {.cell-output-display}\n![](spc_files/figure-html/Example SPC Chart-1.png){width=672}\n:::\n:::", 5 | "supporting": [ 6 | "spc_files" 7 | ], 8 | "filters": [ 9 | "rmarkdown/pagebreak.lua" 10 | ], 11 | "includes": {}, 12 | "engineDependencies": {}, 13 | "preserve": {}, 14 | "postProcess": true 15 | } 16 | } -------------------------------------------------------------------------------- /docs/_freeze/tutorials/spc/figure-html/Example SPC Chart-1.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/nhsengland/nhs-r-reporting/ad8dda5b6be6dbcb5768d6a16760d5c641f2f6f9/docs/_freeze/tutorials/spc/figure-html/Example SPC Chart-1.png -------------------------------------------------------------------------------- /docs/_freeze/tutorials/udal/execute-results/html.json: -------------------------------------------------------------------------------- 1 | { 2 | "hash": "8b5ada0796cea820889db64bf4805c70", 3 | "result": { 4 | "markdown": "---\ntitle: National Data Platform (UDAL)\nsubtitle: \"NHS England Datastore\"\nauthor: \"Simon Wellesley-Miller\"\ndate: \"2023-02-05\"\ncategories: [SQL, R]\n---\n\n\n## Query UDAL in R\n\nFirst load in appropriate libraries; `DBI` is the main one for the connection to UDAL, and `tidyverse` allows you to to use `dbpylr` verbs.\n\n```r\nlibrary (DBI)\nlibrary (odbc)\nlibrary (tidyverse)\nlibrary (dbplyr)\nsource ('personal_credentials.R')\n```\n\n::: {.callout-warning}\n## Important!\nIt is good practice to *not* publish connection strings, therefore I have put them into a separate file as follows:\n\n\n::: {.cell}\n\n```{.r .cell-code}\nserv <-\"\"\ndb <- \"\"\nuser <- \"\"\n```\n:::\n\n:::\n\n## Open Connection\n\nThis is the main connection command:\n\n```r\ncon_udal <- dbConnect(\n drv = odbc(),\n driver = \"ODBC Driver 17 for SQL Server\",\n server = serv,\n database = db,\n UID = user,\n authentication = \"ActiveDirectoryInteractive\"\n)\n```\n\n::: {.callout-note}\n## Note\nWhen this is run a separate window will open where you will need to enter two part authentication \n\n::: \n\nOnce that has been run you will see a connection appear in the connections tab - top right\n\n## Running SQL Query\n\nYou can parse a standard sql query using a `dbGetQuery()` command, it requires the connection string (that you have already specified above) and the sql code.\n\n- Each query can return one dataframe of data, if you have multiple queries use separate queries (there is a way around this but it is quite complex)\n- The `dbGetQuery()` does not like temporary tables (they are bad practice anyway), but it will accept common table expressions (CTEs) or subqueries\n\n```r\ndf_one <- dbGetQuery(\n conn = con_udal,\n statement = \"\n\n SELECT appointment_date,\n appointment_status,\n HCP_Type,\n Appointment_Mode,\n Count_Of_Appointments\n\n FROM [UKHF_Appts_In_General_Practice].[Appts_GP_Daily1]\n\n WHERE Appointment_Date >= '2022-11-25'\n\n \"\n )\n```\n\nAlternatively we can keep our sql separate and read in a script:\n\n```r\ndf_two <- dbGetQuery(con_udal, \n read_file(\"test_query.sql\"))\n```\n\n## Using `dbpylr`\n\nFinally we can skip sql entirely and query using dplyr like verbs. First we make a connection to the table we want - note that this does not actually create a table - more of a virtual one:\n\n```r\ndbpylr_table <- tbl(con_udal, \n in_schema(\"UKHF_Appts_In_General_Practice\", \n \"Appts_GP_Daily1\"))\n```\n\nHowever we can then use our virtual table and query it using dplyr verbs.\n\nEnsure to add collect at the end to convert the final results into an actual dataframe:\n\n```r\ndf_three <- dbpylr_table %>%\n select (Appointment_Date,\n Appointment_Status,\n HCP_Type,\n Appointment_Mode,\n Count_Of_Appointments) %>%\n filter (Appointment_Date >= '2022-11-25') %>%\n collect()\n```\n\n## Close Connection \n\nWhen you have finished with the connection it is good practice to close it:\n\n```r\ndbDisconnect(con_udal)\n```\n\nta da!\n\n", 5 | "supporting": [], 6 | "filters": [ 7 | "rmarkdown/pagebreak.lua" 8 | ], 9 | "includes": {}, 10 | "engineDependencies": {}, 11 | "preserve": {}, 12 | "postProcess": true 13 | } 14 | } -------------------------------------------------------------------------------- /docs/_quarto.yml: -------------------------------------------------------------------------------- 1 | project: 2 | type: website 3 | 4 | website: 5 | open-graph: true 6 | page-navigation: true 7 | title: "NHSE-R" 8 | description: "NHSE-R" 9 | # date: now 10 | favicon: assets/favicons/favicon.ico 11 | repo-url: https://github.com/nhsengland/nhs-r-reporting 12 | repo-subdir: docs 13 | repo-actions: [edit, issue] 14 | site-url: https://nhsengland.github.io/nhs-r-reporting 15 | 16 | page-footer: 17 | left: "This page is built with ❤️ and [Quarto](https://quarto.org/)." 18 | # background: "#005eb8" 19 | right: 20 | - text: "License" 21 | href: https://github.com/nhsengland/nhs-r-reporting/blob/main/LICENSE 22 | - text: "Code of Conduct" 23 | href: https://github.com/nhsengland/nhs-r-reporting/blob/main/CODE_OF_CONDUCT.md 24 | 25 | navbar: 26 | background: light 27 | title: false 28 | collapse-below: lg 29 | left: 30 | - text: "Homepage" 31 | icon: "house-door" 32 | href: index.qmd 33 | - text: "Tutorials" 34 | icon: "bookmark-check" 35 | href: tutorials/index.qmd 36 | - text: "Updates" 37 | icon: "rss" 38 | href: updates.qmd 39 | right: 40 | - text: "Help" 41 | menu: 42 | - text: "Report a Bug" 43 | icon: "bug" 44 | href: "https://github.com/nhsengland/nhs-r-reporting/issues" 45 | - text: "Ask a Question" 46 | icon: "chat-right-text" 47 | href: "https://github.com/nhsengland/nhs-r-reporting/discussions" 48 | - text: "FAQ" 49 | icon: "question-circle" 50 | href: faq.qmd 51 | - icon: github 52 | href: https://github.com/nhsengland/nhs-r-reporting 53 | aria-label: GitHub 54 | - icon: cloud-fill 55 | href: https://future.nhs.uk/NHSERcommunity 56 | aria-label: NHS England R Community 57 | 58 | sidebar: 59 | id: toc-side 60 | style: "floating" 61 | pinned: true 62 | contents: 63 | - section: "NHSE-R" 64 | contents: 65 | - text: "Homepage" 66 | file: index.qmd 67 | - text: "Statement on Tools" 68 | file: statement-on-tools.qmd 69 | - text: "Contribute to this site" 70 | file: contribute.qmd 71 | - section: Tutorials 72 | file: tutorials/index.qmd 73 | contents: 74 | - auto: tutorials/*.qmd 75 | - section: Examples 76 | contents: 77 | - text: "A&E Attendance Report" 78 | file: examples/ae_attendance.html 79 | - text: "FAQ" 80 | file: faq.qmd 81 | format: 82 | html: 83 | toc: true 84 | toc-depth: 4 85 | theme: 86 | light: [cosmo, assets/style/theme.scss] 87 | code-copy: true 88 | code-overflow: wrap 89 | css: assets/style/styles.css 90 | include-after-body: assets/style/js.html 91 | 92 | execute: 93 | freeze: auto 94 | -------------------------------------------------------------------------------- /docs/_site/assets/favicons/favicon.ico: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/nhsengland/nhs-r-reporting/ad8dda5b6be6dbcb5768d6a16760d5c641f2f6f9/docs/_site/assets/favicons/favicon.ico 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Dygraph:false */ 8 | /*jshint globalstrict: true */ 9 | Dygraph.Plugins.Crosshair = (function() { 10 | "use strict"; 11 | 12 | /** 13 | * Creates the crosshair 14 | * 15 | * @constructor 16 | */ 17 | 18 | var crosshair = function(opt_options) { 19 | this.canvas_ = document.createElement("canvas"); 20 | opt_options = opt_options || {}; 21 | this.direction_ = opt_options.direction || null; 22 | }; 23 | 24 | crosshair.prototype.toString = function() { 25 | return "Crosshair Plugin"; 26 | }; 27 | 28 | /** 29 | * @param {Dygraph} g Graph instance. 30 | * @return {object.} Mapping of event names to callbacks. 31 | */ 32 | crosshair.prototype.activate = function(g) { 33 | g.graphDiv.appendChild(this.canvas_); 34 | 35 | return { 36 | select: this.select, 37 | deselect: this.deselect 38 | }; 39 | }; 40 | 41 | crosshair.prototype.select = function(e) { 42 | if (this.direction_ === null) { 43 | return; 44 | } 45 | 46 | var width = e.dygraph.width_; 47 | var height = e.dygraph.height_; 48 | this.canvas_.width = width; 49 | this.canvas_.height = height; 50 | this.canvas_.style.width = width + "px"; // for IE 51 | this.canvas_.style.height = height + "px"; // for IE 52 | 53 | var ctx = this.canvas_.getContext("2d"); 54 | ctx.clearRect(0, 0, width, height); 55 | ctx.strokeStyle = "rgba(0, 0, 0,0.3)"; 56 | ctx.beginPath(); 57 | 58 | var canvasx = Math.floor(e.dygraph.selPoints_[0].canvasx) + 0.5; // crisper rendering 59 | 60 | if (this.direction_ === "vertical" || this.direction_ === "both") { 61 | ctx.moveTo(canvasx, 0); 62 | ctx.lineTo(canvasx, height); 63 | } 64 | 65 | if (this.direction_ === "horizontal" || this.direction_ === "both") { 66 | for (var i = 0; i < e.dygraph.selPoints_.length; i++) { 67 | var canvasy = Math.floor(e.dygraph.selPoints_[i].canvasy) + 0.5; // crisper rendering 68 | ctx.moveTo(0, canvasy); 69 | ctx.lineTo(width, canvasy); 70 | } 71 | } 72 | 73 | ctx.stroke(); 74 | ctx.closePath(); 75 | }; 76 | 77 | crosshair.prototype.deselect = function(e) { 78 | var ctx = this.canvas_.getContext("2d"); 79 | ctx.clearRect(0, 0, this.canvas_.width, this.canvas_.height); 80 | }; 81 | 82 | crosshair.prototype.destroy = function() { 83 | this.canvas_ = null; 84 | }; 85 | 86 | return crosshair; 87 | })(); 88 | -------------------------------------------------------------------------------- /docs/_site/site_libs/bootstrap/bootstrap-icons.woff: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/nhsengland/nhs-r-reporting/ad8dda5b6be6dbcb5768d6a16760d5c641f2f6f9/docs/_site/site_libs/bootstrap/bootstrap-icons.woff -------------------------------------------------------------------------------- /docs/_site/site_libs/collapsibleTree-0.1.6/collapsibleTree.css: -------------------------------------------------------------------------------- 1 | .collapsibleTree .node { 2 | cursor: pointer; 3 | } 4 | 5 | .collapsibleTree .node circle { 6 | fill: #fff; 7 | stroke: #000; 8 | } 9 | 10 | .collapsibleTree .node text { 11 | font: 10px sans-serif; 12 | } 13 | 14 | .collapsibleTree .link { 15 | fill: none; 16 | stroke: #ccc; 17 | stroke-width: 1.5px; 18 | } 19 | 20 | .collapsibleTree div.tooltip { 21 | position: absolute; 22 | text-align: center; 23 | padding: 3px; 24 | font: 10px sans-serif; 25 | background: #fff; 26 | border: 2px; 27 | border-radius: 8px; 28 | border-style: solid; 29 | pointer-events: none; 30 | } 31 | -------------------------------------------------------------------------------- /docs/_site/site_libs/collapsibleTree-0.1.6/d3-4.10.2/LICENSE: -------------------------------------------------------------------------------- 1 | Copyright 2010-2017 Mike Bostock 2 | All rights reserved. 3 | 4 | Redistribution and use in source and binary forms, with or without modification, 5 | are permitted provided that the following conditions are met: 6 | 7 | * Redistributions of source code must retain the above copyright notice, this 8 | list of conditions and the following disclaimer. 9 | 10 | * Redistributions in binary form must reproduce the above copyright notice, 11 | this list of conditions and the following disclaimer in the documentation 12 | and/or other materials provided with the distribution. 13 | 14 | * Neither the name of the author nor the names of contributors may be used to 15 | endorse or promote products derived from this software without specific prior 16 | written permission. 17 | 18 | THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS "AS IS" AND 19 | ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE IMPLIED 20 | WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE ARE 21 | DISCLAIMED. IN NO EVENT SHALL THE COPYRIGHT OWNER OR CONTRIBUTORS BE LIABLE FOR 22 | ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR CONSEQUENTIAL DAMAGES 23 | (INCLUDING, BUT NOT LIMITED TO, PROCUREMENT OF SUBSTITUTE GOODS OR SERVICES; 24 | LOSS OF USE, DATA, OR PROFITS; OR BUSINESS INTERRUPTION) HOWEVER CAUSED AND ON 25 | ANY THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT LIABILITY, OR TORT 26 | (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY OUT OF THE USE OF THIS 27 | SOFTWARE, EVEN IF ADVISED OF THE POSSIBILITY OF SUCH DAMAGE. 28 | -------------------------------------------------------------------------------- /docs/_site/site_libs/core-js-2.5.3/LICENSE: -------------------------------------------------------------------------------- 1 | Copyright (c) 2014-2017 Denis Pushkarev 2 | 3 | Permission is hereby granted, free of charge, to any person obtaining a copy 4 | of this software and associated documentation files (the "Software"), to deal 5 | in the Software without restriction, including without limitation the rights 6 | to use, copy, modify, merge, publish, distribute, sublicense, and/or sell 7 | copies of the Software, and to permit persons to whom the Software is 8 | furnished to do so, subject to the following conditions: 9 | 10 | The above copyright notice and this permission notice shall be included in 11 | all copies or substantial portions of the Software. 12 | 13 | THE SOFTWARE IS PROVIDED "AS IS", WITHOUT WARRANTY OF ANY KIND, EXPRESS OR 14 | IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF MERCHANTABILITY, 15 | FITNESS FOR A PARTICULAR PURPOSE AND NONINFRINGEMENT. IN NO EVENT SHALL THE 16 | AUTHORS OR COPYRIGHT HOLDERS BE LIABLE FOR ANY CLAIM, DAMAGES OR OTHER 17 | LIABILITY, WHETHER IN AN ACTION OF CONTRACT, TORT OR OTHERWISE, ARISING FROM, 18 | OUT OF OR IN CONNECTION WITH THE SOFTWARE OR THE USE OR OTHER DEALINGS IN 19 | THE SOFTWARE. 20 | -------------------------------------------------------------------------------- /docs/_site/site_libs/crosstalk-1.2.0/css/crosstalk.min.css: -------------------------------------------------------------------------------- 1 | .container-fluid.crosstalk-bscols{margin-left:-30px;margin-right:-30px;white-space:normal}body>.container-fluid.crosstalk-bscols{margin-left:auto;margin-right:auto}.crosstalk-input-checkboxgroup .crosstalk-options-group .crosstalk-options-column{display:inline-block;padding-right:12px;vertical-align:top}@media only screen and (max-width: 480px){.crosstalk-input-checkboxgroup .crosstalk-options-group .crosstalk-options-column{display:block;padding-right:inherit}}.crosstalk-input{margin-bottom:15px}.crosstalk-input .control-label{margin-bottom:0;vertical-align:middle}.crosstalk-input input[type="checkbox"]{margin:4px 0 0;margin-top:1px;line-height:normal}.crosstalk-input .checkbox{position:relative;display:block;margin-top:10px;margin-bottom:10px}.crosstalk-input .checkbox>label{padding-left:20px;margin-bottom:0;font-weight:400;cursor:pointer}.crosstalk-input .checkbox input[type="checkbox"],.crosstalk-input .checkbox-inline input[type="checkbox"]{position:absolute;margin-top:2px;margin-left:-20px}.crosstalk-input .checkbox+.checkbox{margin-top:-5px}.crosstalk-input .checkbox-inline{position:relative;display:inline-block;padding-left:20px;margin-bottom:0;font-weight:400;vertical-align:middle;cursor:pointer}.crosstalk-input .checkbox-inline+.checkbox-inline{margin-top:0;margin-left:10px} 2 | -------------------------------------------------------------------------------- /docs/_site/site_libs/crosstalk-1.2.0/scss/crosstalk.scss: -------------------------------------------------------------------------------- 1 | /* Adjust margins outwards, so column contents line up with the edges of the 2 | parent of container-fluid. */ 3 | .container-fluid.crosstalk-bscols { 4 | margin-left: -30px; 5 | margin-right: -30px; 6 | white-space: normal; 7 | } 8 | 9 | /* But don't adjust the margins outwards if we're directly under the body, 10 | i.e. we were the top-level of something at the console. */ 11 | body > .container-fluid.crosstalk-bscols { 12 | margin-left: auto; 13 | margin-right: auto; 14 | } 15 | 16 | .crosstalk-input-checkboxgroup .crosstalk-options-group .crosstalk-options-column { 17 | display: inline-block; 18 | padding-right: 12px; 19 | vertical-align: top; 20 | } 21 | 22 | @media only screen and (max-width:480px) { 23 | .crosstalk-input-checkboxgroup .crosstalk-options-group .crosstalk-options-column { 24 | display: block; 25 | padding-right: inherit; 26 | } 27 | } 28 | 29 | /* Relevant BS3 styles to make filter_checkbox() look reasonable without Bootstrap */ 30 | .crosstalk-input { 31 | margin-bottom: 15px; /* a la .form-group */ 32 | .control-label { 33 | margin-bottom: 0; 34 | vertical-align: middle; 35 | } 36 | input[type="checkbox"] { 37 | margin: 4px 0 0; 38 | margin-top: 1px; 39 | line-height: normal; 40 | } 41 | .checkbox { 42 | position: relative; 43 | display: block; 44 | margin-top: 10px; 45 | margin-bottom: 10px; 46 | } 47 | .checkbox > label{ 48 | padding-left: 20px; 49 | margin-bottom: 0; 50 | font-weight: 400; 51 | cursor: pointer; 52 | } 53 | .checkbox input[type="checkbox"], 54 | .checkbox-inline input[type="checkbox"] { 55 | position: absolute; 56 | margin-top: 2px; 57 | margin-left: -20px; 58 | } 59 | .checkbox + .checkbox { 60 | margin-top: -5px; 61 | } 62 | .checkbox-inline { 63 | position: relative; 64 | display: inline-block; 65 | padding-left: 20px; 66 | margin-bottom: 0; 67 | font-weight: 400; 68 | vertical-align: middle; 69 | cursor: pointer; 70 | } 71 | .checkbox-inline + .checkbox-inline { 72 | margin-top: 0; 73 | margin-left: 10px; 74 | } 75 | } 76 | -------------------------------------------------------------------------------- /docs/_site/site_libs/d3-4.10.2/LICENSE: -------------------------------------------------------------------------------- 1 | Copyright 2010-2017 Mike Bostock 2 | All rights reserved. 3 | 4 | Redistribution and use in source and binary forms, with or without modification, 5 | are permitted provided that the following conditions are met: 6 | 7 | * Redistributions of source code must retain the above copyright notice, this 8 | list of conditions and the following disclaimer. 9 | 10 | * Redistributions in binary form must reproduce the above copyright notice, 11 | this list of conditions and the following disclaimer in the documentation 12 | and/or other materials provided with the distribution. 13 | 14 | * Neither the name of the author nor the names of contributors may be used to 15 | endorse or promote products derived from this software without specific prior 16 | written permission. 17 | 18 | THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS "AS IS" AND 19 | ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE IMPLIED 20 | WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE ARE 21 | DISCLAIMED. IN NO EVENT SHALL THE COPYRIGHT OWNER OR CONTRIBUTORS BE LIABLE FOR 22 | ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR CONSEQUENTIAL DAMAGES 23 | (INCLUDING, BUT NOT LIMITED TO, PROCUREMENT OF SUBSTITUTE GOODS OR SERVICES; 24 | LOSS OF USE, DATA, OR PROFITS; OR BUSINESS INTERRUPTION) HOWEVER CAUSED AND ON 25 | ANY THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT LIABILITY, OR TORT 26 | (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY OUT OF THE USE OF THIS 27 | SOFTWARE, EVEN IF ADVISED OF THE POSSIBILITY OF SUCH DAMAGE. 28 | -------------------------------------------------------------------------------- /docs/_site/site_libs/datatables-css-0.0.0/datatables-crosstalk.css: -------------------------------------------------------------------------------- 1 | .dt-crosstalk-fade { 2 | opacity: 0.2; 3 | } 4 | 5 | html body div.DTS div.dataTables_scrollBody { 6 | background: none; 7 | } 8 | 9 | 10 | /* 11 | Fix https://github.com/rstudio/DT/issues/563 12 | If the `table.display` is set to "block" (e.g., pkgdown), the browser will display 13 | datatable objects strangely. The search panel and the page buttons will still be 14 | in full-width but the table body will be "compact" and shorter. 15 | In therory, having this attributes will affect `dom="t"` 16 | with `display: block` users. But in reality, there should be no one. 17 | We may remove the below lines in the future if the upstream agree to have this there. 18 | See https://github.com/DataTables/DataTablesSrc/issues/160 19 | */ 20 | 21 | table.dataTable { 22 | display: table; 23 | } 24 | -------------------------------------------------------------------------------- /docs/_site/site_libs/dt-core-1.12.1/css/jquery.dataTables.extra.css: -------------------------------------------------------------------------------- 1 | /* Selected rows/cells */ 2 | table.dataTable tr.selected td, table.dataTable td.selected { 3 | background-color: #b0bed9 !important; 4 | } 5 | /* In case of scrollX/Y or FixedHeader */ 6 | .dataTables_scrollBody .dataTables_sizing { 7 | visibility: hidden; 8 | } 9 | 10 | /* The datatables' theme CSS file doesn't define 11 | the color but with white background. It leads to an issue that 12 | when the HTML's body color is set to 'white', the user can't 13 | see the text since the background is white. One case happens in the 14 | RStudio's IDE when inline viewing the DT table inside an Rmd file, 15 | if the IDE theme is set to "Cobalt". 16 | 17 | See https://github.com/rstudio/DT/issues/447 for more info 18 | 19 | This fixes should have little side-effects because all the other elements 20 | of the default theme use the #333 font color. 21 | 22 | TODO: The upstream may use relative colors for both the table background 23 | and the color. It means the table can display well without this patch 24 | then. 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Voogdt 3 | License: MIT 4 | Version: 1.0 5 | */ 6 | 7 | /* Marker setup */ 8 | .awesome-marker { 9 | background: url('images/markers-soft.png') no-repeat 0 0; 10 | width: 35px; 11 | height: 46px; 12 | position:absolute; 13 | left:0; 14 | top:0; 15 | display: block; 16 | text-align: center; 17 | } 18 | 19 | .awesome-marker-shadow { 20 | background: url('images/markers-shadow.png') no-repeat 0 0; 21 | width: 36px; 22 | height: 16px; 23 | } 24 | 25 | /* Retina displays */ 26 | @media (min--moz-device-pixel-ratio: 1.5),(-o-min-device-pixel-ratio: 3/2), 27 | (-webkit-min-device-pixel-ratio: 1.5),(min-device-pixel-ratio: 1.5),(min-resolution: 1.5dppx) { 28 | .awesome-marker { 29 | background-image: url('images/markers-soft@2x.png'); 30 | background-size: 720px 92px; 31 | } 32 | .awesome-marker-shadow { 33 | background-image: url('images/markers-shadow@2x.png'); 34 | background-size: 35px 16px; 35 | } 36 | } 37 | 38 | .awesome-marker i { 39 | color: #333; 40 | margin-top: 10px; 41 | display: 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Voogdt 3 | License: MIT 4 | Version: 1.0 5 | */ 6 | 7 | /* Marker setup */ 8 | .awesome-marker { 9 | background: url('images/markers-soft.png') no-repeat 0 0; 10 | width: 35px; 11 | height: 46px; 12 | position:absolute; 13 | left:0; 14 | top:0; 15 | display: block; 16 | text-align: center; 17 | } 18 | 19 | .awesome-marker-shadow { 20 | background: url('images/markers-shadow.png') no-repeat 0 0; 21 | width: 36px; 22 | height: 16px; 23 | } 24 | 25 | /* Retina displays */ 26 | @media (min--moz-device-pixel-ratio: 1.5),(-o-min-device-pixel-ratio: 3/2), 27 | (-webkit-min-device-pixel-ratio: 1.5),(min-device-pixel-ratio: 1.5),(min-resolution: 1.5dppx) { 28 | .awesome-marker { 29 | background-image: url('images/markers-soft@2x.png'); 30 | background-size: 720px 92px; 31 | } 32 | .awesome-marker-shadow { 33 | background-image: url('images/markers-shadow@2x.png'); 34 | background-size: 35px 16px; 35 | } 36 | } 37 | 38 | .awesome-marker i { 39 | color: #333; 40 | margin-top: 10px; 41 | display: inline-block; 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92 | } 93 | 94 | .awesome-marker-icon-purple { 95 | background-position: -144px 0; 96 | } 97 | 98 | .awesome-marker-icon-darkpurple { 99 | background-position: -288px 0; 100 | } 101 | 102 | .awesome-marker-icon-pink { 103 | background-position: -504px 0; 104 | } 105 | 106 | .awesome-marker-icon-cadetblue { 107 | background-position: -324px 0; 108 | } 109 | 110 | .awesome-marker-icon-white { 111 | background-position: -576px 0; 112 | } 113 | 114 | .awesome-marker-icon-gray { 115 | background-position: -648px 0; 116 | } 117 | 118 | .awesome-marker-icon-lightgray { 119 | background-position: -612px 0; 120 | } 121 | 122 | .awesome-marker-icon-black { 123 | background-position: -682px 0; 124 | } 125 | 126 | .awesome-marker-square { 127 | background-position-y: -46px; 128 | } 129 | -------------------------------------------------------------------------------- /docs/_site/site_libs/leaflet-awesomemarkers-2.0.3/leaflet.awesome-markers.min.js: -------------------------------------------------------------------------------- 1 | (function(window,document,undefined){"use strict";L.AwesomeMarkers={};L.AwesomeMarkers.version="2.0.1";L.AwesomeMarkers.Icon=L.Icon.extend({options:{iconSize:[35,45],iconAnchor:[17,42],popupAnchor:[1,-32],shadowAnchor:[10,12],shadowSize:[36,16],className:"awesome-marker",prefix:"glyphicon",spinClass:"fa-spin",extraClasses:"",icon:"home",markerColor:"blue",iconColor:"white",iconRotate:0,font:"monospace"},initialize:function(options){options=L.Util.setOptions(this,options)},createIcon:function(){var div=document.createElement("div"),options=this.options;if(options.icon){div.innerHTML=this._createInner()}if(options.bgPos){div.style.backgroundPosition=-options.bgPos.x+"px "+-options.bgPos.y+"px"}this._setIconStyles(div,"icon-"+options.markerColor);return div},_createInner:function(){var iconClass,iconSpinClass="",iconColorClass="",iconColorStyle="",options=this.options;if(!options.prefix||options.icon.slice(0,options.prefix.length+1)===options.prefix+"-"){iconClass=options.icon}else{iconClass=options.prefix+"-"+options.icon}if(options.spin&&typeof options.spinClass==="string"){iconSpinClass=options.spinClass}if(options.iconColor){if((options.iconColor==="white"||options.iconColor==="black")&&options.prefix!=="fa"){iconColorClass="icon-"+options.iconColor}else if(options.prefix==="fa"&&options.iconColor==="white"){iconColorClass="fa-inverse"}else{iconColorStyle="color: "+options.iconColor+";"}}if(options.font&&options.text){iconColorStyle+="font-family: "+options.font+";"}if(options.iconRotate&&options.iconRotate!==0){iconColorStyle+="-webkit-transform: rotate("+options.iconRotate+"deg);";iconColorStyle+="-moz-transform: rotate("+options.iconRotate+"deg);";iconColorStyle+="-o-transform: rotate("+options.iconRotate+"deg);";iconColorStyle+="-ms-transform: rotate("+options.iconRotate+"deg);";iconColorStyle+="transform: rotate("+options.iconRotate+"deg);"}if(options.text){return""+options.text+""}return""},_setIconStyles:function(img,name){var options=this.options,size=L.point(options[name==="shadow"?"shadowSize":"iconSize"]),anchor;if(name==="shadow"){anchor=L.point(options.shadowAnchor||options.iconAnchor)}else{anchor=L.point(options.iconAnchor)}if(!anchor&&size){anchor=size.divideBy(2,true)}img.className="awesome-marker-"+name+" "+options.className;if(anchor){img.style.marginLeft=-anchor.x+"px";img.style.marginTop=-anchor.y+"px"}if(size){img.style.width=size.x+"px";img.style.height=size.y+"px"}},createShadow:function(){var div=document.createElement("div");this._setIconStyles(div,"shadow");return div}});L.AwesomeMarkers.icon=function(options){return new L.AwesomeMarkers.Icon(options)}})(this,document); 2 | -------------------------------------------------------------------------------- /docs/_site/site_libs/leaflet-providers-plugin-2.1.1/leaflet-providers-plugin.js: -------------------------------------------------------------------------------- 1 | LeafletWidget.methods.addProviderTiles = function(provider, layerId, group, options) { 2 | this.layerManager.addLayer(L.tileLayer.provider(provider, options), "tile", layerId, group); 3 | }; 4 | -------------------------------------------------------------------------------- /docs/_site/site_libs/leafletfix-1.0.0/leafletfix.css: -------------------------------------------------------------------------------- 1 | /* Work around CSS properties introduced on img by bootstrap */ 2 | img.leaflet-tile { 3 | padding: 0; 4 | margin: 0; 5 | border-radius: 0; 6 | border: none; 7 | } 8 | .info { 9 | padding: 6px 8px; 10 | font: 14px/16px Arial, Helvetica, sans-serif; 11 | background: white; 12 | background: rgba(255,255,255,0.8); 13 | box-shadow: 0 0 15px rgba(0,0,0,0.2); 14 | border-radius: 5px; 15 | } 16 | .legend { 17 | line-height: 18px; 18 | color: #555; 19 | } 20 | .legend svg text { 21 | fill: #555; 22 | } 23 | .legend svg line { 24 | stroke: #555; 25 | } 26 | .legend i { 27 | width: 18px; 28 | height: 18px; 29 | margin-right: 4px; 30 | opacity: 0.7; 31 | display: inline-block; 32 | vertical-align: top; 33 | /*For IE 7*/ 34 | zoom: 1; 35 | *display: inline; 36 | } 37 | -------------------------------------------------------------------------------- /docs/_site/site_libs/moment-fquarter-1.0.0/moment-fquarter.min.js: -------------------------------------------------------------------------------- 1 | (function(){function n(n){return n.fn.fquarter=function(n){var u=this.lang()._quarter||"Q",t={},r,i=null;return n=n||4,n>1?(r=this.subtract("months",n-1),i=r.clone().add("years",1)):r=this,t.quarter=Math.ceil((r.month()+1)/3),t.year=r.year(),t.nextYear=i?i.year():i,t.toString=function(){var n=u+t.quarter+" "+t.year;return i?n+"/"+i.format("YY"):n},t},n}typeof define=="function"&&define.amd?define("moment-fquarter",["moment"],n):typeof module!="undefined"?module.exports=n(require("moment")):typeof window!="undefined"&&window.moment&&n(window.moment)}).apply(this); -------------------------------------------------------------------------------- /docs/_site/site_libs/nouislider-7.0.10/jquery.nouislider.min.css: -------------------------------------------------------------------------------- 1 | /*! noUiSlider - 7.0.10 - 2015-03-17 17:30:22 */ 2 | 3 | 4 | .noUi-target,.noUi-target *{-webkit-touch-callout:none;-webkit-user-select:none;-ms-touch-action:none;-ms-user-select:none;-moz-user-select:none;-moz-box-sizing:border-box;box-sizing:border-box}.noUi-target{position:relative;direction:ltr}.noUi-base{width:100%;height:100%;position:relative}.noUi-origin{position:absolute;right:0;top:0;left:0;bottom:0}.noUi-handle{position:relative;z-index:1}.noUi-stacking .noUi-handle{z-index:10}.noUi-state-tap .noUi-origin{-webkit-transition:left .3s,top .3s;transition:left .3s,top .3s}.noUi-state-drag *{cursor:inherit!important}.noUi-base{-webkit-transform:translate3d(0,0,0);transform:translate3d(0,0,0)}.noUi-horizontal{height:10px}.noUi-horizontal .noUi-handle{width:24px;height:18px;left:-12px;top:-6px}.noUi-vertical{width:10px}.noUi-vertical .noUi-handle{width:18px;height:24px;left:-5px;top:-12px}.noUi-background{background:#FAFAFA;box-shadow:inset 0 1px 1px #f0f0f0}.noUi-connect{background:#3FB8AF;box-shadow:inset 0 0 3px rgba(51,51,51,.45);-webkit-transition:background 450ms;transition:background 450ms}.noUi-origin{border-radius:2px}.noUi-target{border-radius:4px;border:1px solid #D3D3D3;box-shadow:inset 0 1px 1px #F0F0F0,0 3px 6px -5px #BBB}.noUi-target.noUi-connect{box-shadow:inset 0 0 3px rgba(51,51,51,.45),0 3px 6px -5px #BBB}.noUi-dragable{cursor:w-resize}.noUi-vertical .noUi-base{height:135px;}.noUi-vertical .noUi-dragable{cursor:n-resize}.noUi-handle{border:1px solid #D9D9D9;border-radius:3px;background:#FFF;cursor:default;box-shadow:inset 0 0 1px #FFF,inset 0 1px 7px #EBEBEB,0 3px 6px -3px #BBB}.noUi-active{box-shadow:inset 0 0 1px #FFF,inset 0 1px 7px #DDD,0 3px 6px -3px #BBB}.noUi-handle:after,.noUi-handle:before{content:"";display:block;position:absolute;height:9px;width:1px;background:#E8E7E6;left:9px;top:3.5px}.noUi-handle:after{left:12px}.noUi-vertical .noUi-handle:after,.noUi-vertical .noUi-handle:before{width:9px;height:1px;left:3.5px;top:9px}.noUi-vertical .noUi-handle:after{top:12px}[disabled] .noUi-connect,[disabled].noUi-connect{background:#B8B8B8}[disabled] .noUi-handle{cursor:not-allowed} 5 | -------------------------------------------------------------------------------- /docs/_site/site_libs/plotly-htmlwidgets-css-2.11.1/plotly-htmlwidgets.css: -------------------------------------------------------------------------------- 1 | /* 2 | just here so that plotly works 3 | correctly with ioslides. 4 | see https://github.com/ropensci/plotly/issues/463 5 | */ 6 | 7 | slide:not(.current) .plotly.html-widget{ 8 | display: none; 9 | } 10 | -------------------------------------------------------------------------------- /docs/_site/site_libs/quarto-diagram/mermaid.css: -------------------------------------------------------------------------------- 1 | .mermaidTooltip { 2 | position: absolute; 3 | text-align: center; 4 | max-width: 200px; 5 | padding: 2px; 6 | font-family: "trebuchet ms", verdana, arial; 7 | font-size: 12px; 8 | background: #ffffde; 9 | border: 1px solid #aaaa33; 10 | border-radius: 2px; 11 | pointer-events: none; 12 | z-index: 1000; 13 | } 14 | -------------------------------------------------------------------------------- /docs/_site/site_libs/quarto-html/quarto-syntax-highlighting.css: -------------------------------------------------------------------------------- 1 | /* quarto syntax highlight colors */ 2 | :root { 3 | --quarto-hl-ot-color: #003B4F; 4 | --quarto-hl-at-color: #657422; 5 | --quarto-hl-ss-color: #20794D; 6 | --quarto-hl-an-color: #5E5E5E; 7 | --quarto-hl-fu-color: #4758AB; 8 | --quarto-hl-st-color: #20794D; 9 | --quarto-hl-cf-color: #003B4F; 10 | --quarto-hl-op-color: #5E5E5E; 11 | --quarto-hl-er-color: #AD0000; 12 | --quarto-hl-bn-color: #AD0000; 13 | --quarto-hl-al-color: #AD0000; 14 | --quarto-hl-va-color: #111111; 15 | --quarto-hl-bu-color: inherit; 16 | --quarto-hl-ex-color: inherit; 17 | --quarto-hl-pp-color: #AD0000; 18 | --quarto-hl-in-color: #5E5E5E; 19 | --quarto-hl-vs-color: #20794D; 20 | --quarto-hl-wa-color: #5E5E5E; 21 | --quarto-hl-do-color: #5E5E5E; 22 | --quarto-hl-im-color: #00769E; 23 | --quarto-hl-ch-color: #20794D; 24 | --quarto-hl-dt-color: #AD0000; 25 | --quarto-hl-fl-color: #AD0000; 26 | --quarto-hl-co-color: #5E5E5E; 27 | --quarto-hl-cv-color: #5E5E5E; 28 | --quarto-hl-cn-color: #8f5902; 29 | --quarto-hl-sc-color: #5E5E5E; 30 | --quarto-hl-dv-color: #AD0000; 31 | --quarto-hl-kw-color: #003B4F; 32 | } 33 | 34 | /* other quarto variables */ 35 | :root { 36 | --quarto-font-monospace: SFMono-Regular, Menlo, Monaco, Consolas, "Liberation Mono", "Courier New", monospace; 37 | } 38 | 39 | pre > code.sourceCode > span { 40 | color: #003B4F; 41 | } 42 | 43 | code span { 44 | color: #003B4F; 45 | } 46 | 47 | code.sourceCode > span { 48 | color: #003B4F; 49 | } 50 | 51 | div.sourceCode, 52 | div.sourceCode pre.sourceCode { 53 | color: #003B4F; 54 | } 55 | 56 | code span.ot { 57 | color: #003B4F; 58 | } 59 | 60 | code span.at { 61 | color: #657422; 62 | } 63 | 64 | code span.ss { 65 | color: #20794D; 66 | } 67 | 68 | code span.an { 69 | color: #5E5E5E; 70 | } 71 | 72 | code span.fu { 73 | color: #4758AB; 74 | } 75 | 76 | code span.st { 77 | color: #20794D; 78 | } 79 | 80 | code span.cf { 81 | color: #003B4F; 82 | } 83 | 84 | code span.op { 85 | color: #5E5E5E; 86 | } 87 | 88 | code span.er { 89 | color: #AD0000; 90 | } 91 | 92 | code span.bn { 93 | color: #AD0000; 94 | } 95 | 96 | code span.al { 97 | color: #AD0000; 98 | } 99 | 100 | code span.va { 101 | color: #111111; 102 | } 103 | 104 | code span.pp { 105 | color: #AD0000; 106 | } 107 | 108 | code span.in { 109 | color: #5E5E5E; 110 | } 111 | 112 | code span.vs { 113 | color: #20794D; 114 | } 115 | 116 | code span.wa { 117 | color: #5E5E5E; 118 | font-style: italic; 119 | } 120 | 121 | code span.do { 122 | color: #5E5E5E; 123 | font-style: italic; 124 | } 125 | 126 | code span.im { 127 | color: #00769E; 128 | } 129 | 130 | code span.ch { 131 | color: #20794D; 132 | } 133 | 134 | code span.dt { 135 | color: #AD0000; 136 | } 137 | 138 | code span.fl { 139 | color: #AD0000; 140 | } 141 | 142 | code span.co { 143 | color: #5E5E5E; 144 | } 145 | 146 | code span.cv { 147 | color: #5E5E5E; 148 | font-style: italic; 149 | } 150 | 151 | code span.cn { 152 | color: #8f5902; 153 | } 154 | 155 | code span.sc { 156 | color: #5E5E5E; 157 | } 158 | 159 | code span.dv { 160 | color: #AD0000; 161 | } 162 | 163 | code span.kw { 164 | color: #003B4F; 165 | } 166 | 167 | .prevent-inlining { 168 | content: ".tippy-arrow{bottom:0}.tippy-box[data-placement^=top]>.tippy-arrow:before{bottom:-7px;left:0;border-width:8px 8px 0;border-top-color:initial;transform-origin:center top}.tippy-box[data-placement^=bottom]>.tippy-arrow{top:0}.tippy-box[data-placement^=bottom]>.tippy-arrow:before{top:-7px;left:0;border-width:0 8px 8px;border-bottom-color:initial;transform-origin:center bottom}.tippy-box[data-placement^=left]>.tippy-arrow{right:0}.tippy-box[data-placement^=left]>.tippy-arrow:before{border-width:8px 0 8px 8px;border-left-color:initial;right:-7px;transform-origin:center left}.tippy-box[data-placement^=right]>.tippy-arrow{left:0}.tippy-box[data-placement^=right]>.tippy-arrow:before{left:-7px;border-width:8px 8px 8px 0;border-right-color:initial;transform-origin:center right}.tippy-box[data-inertia][data-state=visible]{transition-timing-function:cubic-bezier(.54,1.5,.38,1.11)}.tippy-arrow{width:16px;height:16px;color:#333}.tippy-arrow:before{content:"";position:absolute;border-color:transparent;border-style:solid}.tippy-content{position:relative;padding:5px 9px;z-index:1} -------------------------------------------------------------------------------- /docs/_site/site_libs/react-17.0.0/LICENSE.txt: -------------------------------------------------------------------------------- 1 | MIT License 2 | 3 | Copyright (c) 2013-present, Facebook, Inc. 4 | 5 | Permission is hereby granted, free of charge, to any person obtaining a copy 6 | of this software and associated documentation files (the "Software"), to deal 7 | in the Software without restriction, including without limitation the rights 8 | to use, copy, modify, merge, publish, distribute, sublicense, and/or sell 9 | copies of the Software, and to permit persons to whom the Software is 10 | furnished to do so, subject to the following conditions: 11 | 12 | The above copyright notice and this permission notice shall be included in all 13 | copies or substantial portions of the Software. 14 | 15 | THE SOFTWARE IS PROVIDED "AS IS", WITHOUT WARRANTY OF ANY KIND, EXPRESS OR 16 | IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF MERCHANTABILITY, 17 | FITNESS FOR A PARTICULAR PURPOSE AND NONINFRINGEMENT. IN NO EVENT SHALL THE 18 | AUTHORS OR COPYRIGHT HOLDERS BE LIABLE FOR ANY CLAIM, DAMAGES OR OTHER 19 | LIABILITY, WHETHER IN AN ACTION OF CONTRACT, TORT OR OTHERWISE, ARISING FROM, 20 | OUT OF OR IN CONNECTION WITH THE SOFTWARE OR THE USE OR OTHER DEALINGS IN THE 21 | SOFTWARE. 22 | -------------------------------------------------------------------------------- /docs/_site/site_libs/reactable-0.4.3/reactable.server.js.LICENSE.txt: -------------------------------------------------------------------------------- 1 | /* 2 | object-assign 3 | (c) Sindre Sorhus 4 | @license MIT 5 | */ 6 | 7 | /*! 8 | * The buffer module from node.js, for the browser. 9 | * 10 | * @author Feross Aboukhadijeh 11 | * @license MIT 12 | */ 13 | 14 | /*! ieee754. BSD-3-Clause License. Feross Aboukhadijeh */ 15 | 16 | /*! safe-buffer. MIT License. Feross Aboukhadijeh */ 17 | 18 | /** @license React v0.20.2 19 | * scheduler.production.min.js 20 | * 21 | * Copyright (c) Facebook, Inc. and its affiliates. 22 | * 23 | * This source code is licensed under the MIT license found in the 24 | * LICENSE file in the root directory of this source tree. 25 | */ 26 | 27 | /** @license React v17.0.2 28 | * react-dom-server.node.production.min.js 29 | * 30 | * Copyright (c) Facebook, Inc. and its affiliates. 31 | * 32 | * This source code is licensed under the MIT license found in the 33 | * LICENSE file in the root directory of this source tree. 34 | */ 35 | 36 | /** @license React v17.0.2 37 | * react-dom.production.min.js 38 | * 39 | * Copyright (c) Facebook, Inc. and its affiliates. 40 | * 41 | * This source code is licensed under the MIT license found in the 42 | * LICENSE file in the root directory of this source tree. 43 | */ 44 | 45 | /** @license React v17.0.2 46 | * react.production.min.js 47 | * 48 | * Copyright (c) Facebook, Inc. and its affiliates. 49 | * 50 | * This source code is licensed under the MIT license found in the 51 | * LICENSE file in the root directory of this source tree. 52 | */ 53 | -------------------------------------------------------------------------------- /docs/_site/site_libs/reactable-0.4.3/reactable.yaml: -------------------------------------------------------------------------------- 1 | dependencies: 2 | - name: reactable 3 | version: 0.4.3 4 | src: htmlwidgets 5 | stylesheet: reactable.css 6 | -------------------------------------------------------------------------------- /docs/_site/site_libs/rstudio_leaflet-1.3.1/images/1px.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/nhsengland/nhs-r-reporting/ad8dda5b6be6dbcb5768d6a16760d5c641f2f6f9/docs/_site/site_libs/rstudio_leaflet-1.3.1/images/1px.png -------------------------------------------------------------------------------- /docs/_site/site_libs/rstudio_leaflet-1.3.1/rstudio_leaflet.css: -------------------------------------------------------------------------------- 1 | .leaflet-tooltip.leaflet-tooltip-text-only, 2 | .leaflet-tooltip.leaflet-tooltip-text-only:before, 3 | .leaflet-tooltip.leaflet-tooltip-text-only:after { 4 | background: none; 5 | border: none; 6 | box-shadow: none; 7 | } 8 | 9 | .leaflet-tooltip.leaflet-tooltip-text-only.leaflet-tooltip-left { 10 | margin-left: 5px; 11 | } 12 | 13 | .leaflet-tooltip.leaflet-tooltip-text-only.leaflet-tooltip-right { 14 | margin-left: -5px; 15 | } 16 | 17 | .leaflet-tooltip:after { 18 | border-right: 6px solid transparent; 19 | /* right: -16px; */ 20 | } 21 | 22 | .leaflet-popup-pane .leaflet-popup-tip-container { 23 | /* when the tooltip container is clicked, it is closed */ 24 | pointer-events: all; 25 | /* tooltips should display the "hand" icon, just like .leaflet-interactive*/ 26 | cursor: pointer; 27 | } 28 | 29 | /* have the widget be displayed in the right 'layer' */ 30 | .leaflet-map-pane { 31 | z-index: auto; 32 | } 33 | 34 | /* Add missing rule from leaflet for img. 35 | This complete existing leaflet.css. 36 | Fix for https://github.com/rstudio/rmarkdown/issues/1949 */ 37 | .leaflet-container .leaflet-right-pane img, 38 | .leaflet-container .leaflet-left-pane img { 39 | max-width: none !important; 40 | max-height: none !important; 41 | } 42 | -------------------------------------------------------------------------------- /docs/_site/site_libs/wordcloud2-0.0.1/wordcloud.css: -------------------------------------------------------------------------------- 1 | 2 | #wcLabel { 3 | position: absolute; 4 | border: 2px solid #fff; 5 | box-shadow: 0 0 4px 0 #008; 6 | padding: 2px; 7 | /*margin: -4px 0 0 -4px;*/ 8 | pointer-events: none; } 9 | 10 | #wcSpan { 11 | position: absolute; 12 | top: 100%; 13 | left: 0; 14 | background-color: rgba(255, 255, 255, 0.8); 15 | color: #333; 16 | margin-top: 6px; 17 | padding: 0 0.5em; 18 | border-radius: 0.5em; 19 | white-space: nowrap; } 20 | -------------------------------------------------------------------------------- /docs/_site/site_libs/wordcloud2-binding-0.2.1/wordcloud2.js: -------------------------------------------------------------------------------- 1 | HTMLWidgets.widget({ 2 | 3 | name: 'wordcloud2', 4 | 5 | type: 'output', 6 | 7 | initialize: function(el, width, height) { 8 | var newCanvas = document.createElement("canvas"); 9 | newCanvas.height = height; 10 | newCanvas.width = width; 11 | newCanvas.id = "canvas"; 12 | 13 | el.appendChild(newCanvas); 14 | newlabel(el); 15 | return(el.firstChild); 16 | }, 17 | renderValue: function(el, x, instance) { 18 | // parse gexf data 19 | listData=[]; 20 | for(var i=0; i