├── .gitignore ├── .idea └── other.xml ├── .travis.yml ├── LICENSE ├── R ├── drg_datasets.R ├── seurat_cca_hockley_usoskin.R ├── simulation.R └── test_simulation.R ├── README.md ├── __init__.py ├── _config.yml ├── bin ├── scRNA-generate-data.sh ├── scRNA-source.sh └── scRNA-target.sh ├── doc ├── screen_install_generate.png ├── screen_install_pip.png ├── screen_install_result.png ├── screen_install_scripts.png ├── screen_install_source.png └── screen_install_target.png ├── matlab └── magic_hockley_usoskin.m ├── notebooks └── example.ipynb ├── requirements.txt ├── scRNA ├── __init__.py ├── abstract_clustering.py ├── cmd_generate_data.py ├── cmd_source.py ├── cmd_target.py ├── nmf_clustering.py ├── sc3_clustering.py ├── sc3_clustering_impl.py ├── simulation.py └── utils.py ├── scripts ├── experiments │ ├── main_wrapper_generated_data.py │ ├── main_wrapper_hockley.py │ ├── main_wrapper_hockley_NMF_labels.py │ ├── main_wrapper_hockley_NMF_labels_robustness.py │ ├── main_wrapper_hockley_robustness.py │ ├── main_wrapper_hockley_robustness_magic.py │ ├── main_wrapper_hockley_robustness_seurat.py │ ├── main_wrapper_tasic.py │ └── main_wrapper_tasic_NMF_labels.py └── plots │ ├── evaluate_hockley_robustness.py │ ├── evaluate_hockley_robustness_magic_seurat.py │ ├── main_plots_generated_data.py │ ├── main_plots_hockley.py │ ├── main_plots_hockley_magic.py │ ├── main_plots_hockley_robustness.py │ ├── main_plots_hockley_seurat.py │ └── main_plots_tasic.py ├── setup.py └── tests └── test_transfer.py /.gitignore: -------------------------------------------------------------------------------- 1 | *.pyc 2 | .idea/ 3 | -------------------------------------------------------------------------------- /.idea/other.xml: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/nicococo/scRNA/HEAD/.idea/other.xml -------------------------------------------------------------------------------- /.travis.yml: 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