├── .github ├── PULL_REQUEST_TEMPLATE.md ├── action-release-drafter.yml ├── actions │ ├── auto_assign_dev.yml │ └── auto_assign_stable.yml └── workflows │ ├── action-auto-assign-dev.yml │ ├── action-auto-assign-stable.yml │ ├── add-new-issue-to-column.yml │ ├── ci.yml │ └── release-drafter.yml ├── .gitignore ├── .readthedocs.yaml ├── Assessments └── InitialFAIRshakeDocsAssessment.md ├── CODE_OF_CONDUCT.md ├── CONTRIBUTING.md ├── In-Prep ├── KF_6_Browsing.md ├── KF_6_Filters.md ├── KF_7_PushToCavatica.md ├── KF_8_ApplyingForAccess.md └── KF_X_FileFormats.md ├── LICENSE.md ├── README.md ├── TrainingAndEvaluationPlan.md ├── TrainingPlanV1.md ├── TrainingPlanV2.md ├── TrainingPlanV3.md ├── custom ├── assets │ ├── homepg-images │ │ ├── 1.png │ │ ├── 10.png │ │ ├── 2.png │ │ ├── 3.png │ │ ├── 4.png │ │ ├── 5.png │ │ ├── 6.png │ │ ├── 7.png │ │ ├── 8.png │ │ ├── 9.png │ │ ├── iHMP-tutorial.png │ │ └── nih-cf-logo.jpeg │ └── stylesheets │ │ ├── main.min.css │ │ └── overrides.min.css ├── main.html ├── overrides │ ├── home.html │ └── main.html └── partials │ ├── footer.html │ └── header.html ├── docs ├── .pages ├── Bioinformatic-Analyses │ ├── .pages │ ├── BLAST-Command-Line │ │ ├── BLAST1.md │ │ ├── BLAST2.md │ │ ├── BLAST3.md │ │ └── BLAST4.md │ ├── GWAS-in-the-cloud │ │ ├── .pages │ │ ├── RStudio.md │ │ ├── analyze.md │ │ ├── aws_instance_setup.md │ │ ├── background.md │ │ ├── download_accessAWS.md │ │ ├── images-gwas │ │ │ ├── GWAS_General_AWS_Connected.png │ │ │ ├── GWAS_General_AWS_Free_Tier.png │ │ │ ├── GWAS_General_AWS_Updates.png │ │ │ ├── GWAS_General_KeyPair.png │ │ │ ├── GWAS_General_Launch.png │ │ │ ├── GWAS_General_Terminate_AWS.png │ │ │ ├── GWAS_General_Ubuntu.png │ │ │ ├── GWAS_General_aws_connect_your_instance.png │ │ │ ├── GWAS_General_aws_instances_list.png │ │ │ ├── GWAS_General_aws_ohio.png │ │ │ ├── GWAS_General_aws_ohio_selection.png │ │ │ ├── GWAS_General_launching.png │ │ │ ├── GWAS_General_publicDNS.png │ │ │ └── General_GWAS_coatColor_man.png │ │ ├── index.md │ │ ├── manhattan.md │ │ ├── plink_install.md │ │ ├── terminate_aws.md │ │ └── vcftools_install.md │ ├── RNAseq-on-Cavatica │ │ ├── .pages │ │ ├── rna-seq-images │ │ │ ├── 10_Cavatica.png │ │ │ ├── 11_Cavatica.png │ │ │ ├── 12_Cavatica.png │ │ │ ├── 13_Cavatica.png │ │ │ ├── 14_Cavatica.png │ │ │ ├── 15_Cavatica.png │ │ │ ├── 16_Cavatica.png │ │ │ ├── 17_Cavatica.png │ │ │ ├── 18_Cavatica.png │ │ │ ├── 19_Cavatica.png │ │ │ ├── 1_KFDRC.png │ │ │ ├── 20_Cavatica.png │ │ │ ├── 21_Cavatica.png │ │ │ ├── 22_Cavatica.png │ │ │ ├── 2_KFDRC.png │ │ │ ├── 3_KFDRC.png │ │ │ ├── 4_KFDRC.png │ │ │ ├── 5_KFDRC.png │ │ │ ├── 6_KFDRC.png │ │ │ ├── 7_KFDRC.png │ │ │ ├── 8_KFDRC.png │ │ │ ├── 9_KFDRC.png │ │ │ ├── rna-seq-10-01.png │ │ │ ├── rna-seq-10-02.png │ │ │ ├── rna-seq-10-03.png │ │ │ ├── rna-seq-10-04.png │ │ │ ├── rna-seq-10-05.png │ │ │ ├── rna-seq-10-06.png │ │ │ ├── rna-seq-10-07.png │ │ │ ├── rna-seq-10-08.png │ │ │ ├── rna-seq-10-09.png │ │ │ ├── rna-seq-10-10.png │ │ │ ├── rna-seq-10-11-copy-project-config-settings-allow.png │ │ │ ├── rna-seq-10-11-copy-project-config-settings.png │ │ │ ├── rna-seq-10-11-copy-project-config.png │ │ │ ├── rna-seq-10-11-copy-project-in-project.png │ │ │ ├── rna-seq-10-11-copy-project-tile.png │ │ │ ├── rna-seq-10-11.png │ │ │ ├── rna-seq-10-12.png │ │ │ ├── rna-seq-10-13.png │ │ │ ├── rna-seq-10-14.png │ │ │ ├── rna-seq-10-15.png │ │ │ ├── rna-seq-10-16.png │ │ │ ├── rna-seq-6-1.png │ │ │ ├── rna-seq-6-10.png │ │ │ ├── rna-seq-6-2.png │ │ │ ├── rna-seq-6-3.png │ │ │ ├── rna-seq-6-4.png │ │ │ ├── rna-seq-6-5.png │ │ │ ├── rna-seq-6-6.png │ │ │ ├── rna-seq-6-7.png │ │ │ ├── rna-seq-6-8.png │ │ │ ├── rna-seq-6-9.png │ │ │ ├── rna-seq-7-1.png │ │ │ ├── rna-seq-7-2.png │ │ │ ├── rna-seq-7-3.png │ │ │ ├── rna-seq-7-4.png │ │ │ ├── rna-seq-7-5.png │ │ │ ├── rna-seq-7-6.png │ │ │ ├── rna-seq-8-0.png │ │ │ ├── rna-seq-8-1.png │ │ │ ├── rna-seq-8-2.png │ │ │ ├── rna-seq-8-3.png │ │ │ ├── rna-seq-8-4.png │ │ │ ├── rna-seq-8-5.png │ │ │ ├── rna-seq-8-6.png │ │ │ ├── rna-seq-9-01.png │ │ │ ├── rna-seq-9-02.png │ │ │ ├── rna-seq-9-03.png │ │ │ ├── rna-seq-9-04.png │ │ │ ├── rna-seq-9-05.png │ │ │ ├── rna-seq-9-06-01-nih-consent.png │ │ │ ├── rna-seq-9-06-02-gen3-authorize.png │ │ │ ├── rna-seq-9-06.png │ │ │ ├── rna-seq-9-07.png │ │ │ ├── rna-seq-9-08.png │ │ │ ├── rna-seq-9-09.png │ │ │ ├── rna-seq-9-10.png │ │ │ ├── rna-seq-9-11.png │ │ │ ├── rna-seq-9-12.png │ │ │ ├── rna-seq-9-13.png │ │ │ ├── rna-seq-9-14-AnVIL_transfer_ipynb.png │ │ │ ├── rna-seq-9-14.png │ │ │ ├── rna-seq-9-15.png │ │ │ ├── rna-seq-9-16.png │ │ │ ├── rna-seq-9-17.png │ │ │ ├── rna-seq-9-18.png │ │ │ ├── rna-seq-9-19.png │ │ │ ├── rna-seq-9-20.png │ │ │ ├── rna-seq-9-21.png │ │ │ └── rna-seq-workflow.jpeg │ │ ├── rna-seq-supporting-docs │ │ │ ├── .Rapp.history │ │ │ ├── .Rhistory │ │ │ ├── Cancer_DGE_Analysis.R │ │ │ └── Cancer_DGE_Analysis_Automate.R │ │ ├── rna_seq_01.md │ │ ├── rna_seq_02.md │ │ ├── rna_seq_03.md │ │ ├── rna_seq_04.md │ │ ├── rna_seq_05.md │ │ ├── rna_seq_06.md │ │ ├── rna_seq_07.md │ │ ├── rna_seq_08.md │ │ ├── rna_seq_09.md │ │ └── rna_seq_10.md │ ├── Simulate_Illumina_Reads.md │ └── index.md ├── CFDE-Internal-Training │ ├── .pages │ ├── MIME-type │ │ ├── .pages │ │ ├── Example_data_files.md │ │ ├── Intro_MIME_type.md │ │ ├── Multiple_file_MIME.md │ │ ├── Unexpected_behavior.md │ │ ├── file.md │ │ ├── images │ │ │ ├── KFDRC_file_ID_upload.png │ │ │ ├── KFDRC_search_by_file_ID.png │ │ │ └── MIME_type_example_files.png │ │ ├── index.md │ │ ├── mime_supplementary_files │ │ │ ├── KF_File_ID.csv │ │ │ ├── file_screencast.cast │ │ │ ├── mimetype_screencast.cast │ │ │ ├── siegfried_screencast.cast │ │ │ └── xdg-mime_screencast.cast │ │ ├── mimetype.md │ │ ├── siegfried.md │ │ └── xdg-utils.md │ ├── ProtectedBranch_HowTo.md │ ├── cfdebot_website_editing.md │ ├── github_auth_setup.md │ ├── images-cfdebot │ │ ├── github-branch-stable.png │ │ └── github-new-branch.png │ ├── images-github-auth │ │ ├── 0-account-security.png │ │ ├── 0-developer-settings.png │ │ ├── 1-two-factor-auth.png │ │ ├── 2-two-factor-auth-phone-set-up.png │ │ ├── 3-save-recovery-codes.png │ │ ├── 4-generate-pat.png │ │ └── 5-personal-access-token.png │ └── index.md ├── Cloud-Platforms │ ├── .pages │ ├── Introduction-to-AWS │ │ ├── .pages │ │ ├── aws1.md │ │ ├── aws2.md │ │ ├── aws3.md │ │ ├── aws4.md │ │ ├── images-aws │ │ │ ├── Mobaxterm_transfer1.png │ │ │ ├── Mobaxterm_transfer2.png │ │ │ ├── Terminate.png │ │ │ ├── aws_1.png │ │ │ ├── aws_10.png │ │ │ ├── aws_11.png │ │ │ ├── aws_12.png │ │ │ ├── aws_2.png │ │ │ ├── aws_3.png │ │ │ ├── aws_4.png │ │ │ ├── aws_5.png │ │ │ ├── aws_6.png │ │ │ ├── aws_7.png │ │ │ ├── aws_8.png │ │ │ ├── aws_9.png │ │ │ ├── aws_launch.png │ │ │ ├── connect_1.png │ │ │ ├── connect_2.png │ │ │ ├── connect_3.png │ │ │ ├── connect_4.png │ │ │ ├── mobaxterm_1.png │ │ │ ├── mobaxterm_2.png │ │ │ ├── mobaxterm_3.png │ │ │ ├── mobaxterm_3_2.png │ │ │ ├── mobaxterm_4.png │ │ │ └── original_ssh_terminal.png │ │ └── index.md │ ├── Introduction-to-GCP │ │ ├── .pages │ │ ├── gcp1.md │ │ ├── gcp2.md │ │ ├── gcp3.md │ │ ├── gcp4.md │ │ ├── gcp_images │ │ │ ├── gcp_activatefreetrial.png │ │ │ ├── gcp_authorise_shell.png │ │ │ ├── gcp_authorise_shell2.png │ │ │ ├── gcp_billingaccountmember.png │ │ │ ├── gcp_billingenable.png │ │ │ ├── gcp_billingoverview.png │ │ │ ├── gcp_billingsetup.png │ │ │ ├── gcp_billingtab.png │ │ │ ├── gcp_billinrename.png │ │ │ ├── gcp_blastfiles.png │ │ │ ├── gcp_bootdisk.png │ │ │ ├── gcp_connect1.png │ │ │ ├── gcp_console.png │ │ │ ├── gcp_createproject.png │ │ │ ├── gcp_createvm.png │ │ │ ├── gcp_gcshell.png │ │ │ ├── gcp_login.png │ │ │ ├── gcp_project1.png │ │ │ ├── gcp_project2.png │ │ │ ├── gcp_projectid.png │ │ │ ├── gcp_reconnect.png │ │ │ ├── gcp_shell1.png │ │ │ ├── gcp_shell2.png │ │ │ ├── gcp_storage1.png │ │ │ ├── gcp_storage2.png │ │ │ ├── gcp_storage3.png │ │ │ ├── gcp_vm.png │ │ │ ├── gcp_vmGCS.png │ │ │ ├── gcp_vm_runoptions.png │ │ │ ├── gcp_vm_runoptions2.png │ │ │ ├── gcp_vmconfig.png │ │ │ ├── gcp_vmconfig1.png │ │ │ ├── gcp_vmconfig2.png │ │ │ ├── gcp_vmconfig3.png │ │ │ ├── gcp_vmconfig4.png │ │ │ ├── gcp_vmssh.png │ │ │ ├── gcp_vmstop.png │ │ │ ├── gcp_vmterminal.png │ │ │ ├── sra_config1.png │ │ │ ├── sra_config2.png │ │ │ ├── sra_config3.png │ │ │ ├── sra_config4.png │ │ │ └── sra_example_sample.png │ │ ├── index.md │ │ ├── sratoolkit_config_steps.md │ │ └── testfile.txt │ ├── Introduction-to-Terra │ │ ├── .pages │ │ ├── 0terra.md │ │ ├── 1terra.md │ │ ├── 2terra.md │ │ ├── 3terra.md │ │ ├── 4terra.md │ │ ├── 5terra.md │ │ ├── Dockerfile.md │ │ ├── GWAS_WDL.md │ │ ├── GWAS_json.md │ │ ├── index.md │ │ ├── terra-imgs │ │ │ ├── gcp-billing-tabs.png │ │ │ ├── gcp-billing.png │ │ │ ├── gcp-linkterra1.png │ │ │ ├── gcp-linkterra2.png │ │ │ ├── gcp-linkterra3.png │ │ │ ├── osf-download.png │ │ │ ├── osf-files.png │ │ │ ├── terra-add-files.png │ │ │ ├── terra-billing-option.png │ │ │ ├── terra-billing-project.png │ │ │ ├── terra-home-pg.png │ │ │ ├── terra-workspace-clone.png │ │ │ ├── terra-workspace-clone2.png │ │ │ ├── terra-workspace-clone3.png │ │ │ ├── terra-workspace-delete.png │ │ │ ├── terra-workspace-delete2.png │ │ │ ├── terra-workspace-share1.png │ │ │ ├── terra-workspace-share2.png │ │ │ ├── terra-workspace1.png │ │ │ ├── terra-workspace2.png │ │ │ ├── terra-workspace3.png │ │ │ └── terra-workspace4.png │ │ └── terra_sample_tsv.tsv │ └── index.md ├── Common-Fund-Tools │ ├── .pages │ ├── CFDE-Portal │ │ ├── .pages │ │ ├── Blood-Cancer │ │ │ ├── .pages │ │ │ ├── blood-cancer-data-access.md │ │ │ └── blood-cancer-portal-export.md │ │ ├── Movement-Related-Disorders │ │ │ ├── .pages │ │ │ ├── movement-disorders-data-access.md │ │ │ └── movement-disorders-portal-export.md │ │ ├── iHMP │ │ │ ├── .pages │ │ │ ├── CAVATICA-create.md │ │ │ ├── CAVATICA-drs.md │ │ │ ├── find-export.md │ │ │ └── jupyterhub.md │ │ ├── images │ │ │ ├── AML-anatomy-filter.png │ │ │ ├── AML-assay-anatomy.png │ │ │ ├── AML-blood-filter.png │ │ │ ├── AML-blood-subset.png │ │ │ ├── AML-cohort-export.png │ │ │ ├── AML-final-cohort.png │ │ │ ├── CFDE-portal-biosample.png │ │ │ ├── CFDE-portal-blood-cancer-export.png │ │ │ ├── CFDE-portal-collection.png │ │ │ ├── CFDE-portal-movement-disorder-export.png │ │ │ ├── GTEx-data-annotations.png │ │ │ ├── GTEx-data-download.png │ │ │ ├── GTEx-login-page.png │ │ │ ├── GTEx-sample-annotations.png │ │ │ ├── GTEx-subject-annotations.png │ │ │ ├── KF-data-access.png │ │ │ ├── KF-select-biospecimen-id.png │ │ │ ├── KF-subset-list.png │ │ │ ├── KF-upload-ids.png │ │ │ ├── LINCS-data-portal.png │ │ │ ├── LINCS_dbGaP-data-source.png │ │ │ ├── Metabolomics-download-data.png │ │ │ ├── Metabolomics-statistical-test.png │ │ │ ├── Metabolomics-workbench-summary.png │ │ │ ├── Neurodegeneration-ipsc-filter.png │ │ │ ├── Neurodegeneration-part-of-collection-ipsc.png │ │ │ └── Neurodegeneration-stem-cell.png │ │ └── index.md │ ├── IDG.md │ ├── Kids-First │ │ ├── .pages │ │ ├── Advanced-KF-Portal-Queries │ │ │ ├── .pages │ │ │ ├── KF_10_AndOr.md │ │ │ ├── KF_11_JointQuery.md │ │ │ ├── KF_12_CheckingQueries.md │ │ │ ├── KF_13_SavingQueries.md │ │ │ └── KF_9_AdvancedQuery.md │ │ ├── Download_Data │ │ │ ├── .pages │ │ │ ├── Data-Download-Via-Cavatica.md │ │ │ ├── Data-Download-Via-KF-Portal.md │ │ │ ├── index.md │ │ │ └── vidlets │ │ │ │ ├── 1_screencast.cast │ │ │ │ └── 2_screencast.cast │ │ ├── Exploring-Data-in-the-KF-Portal │ │ │ ├── .pages │ │ │ ├── KF_5_Explore.md │ │ │ ├── KF_6_Filtering.md │ │ │ ├── KF_7_Plots.md │ │ │ └── KF_8_Resetting.md │ │ ├── KF_7_PushToCavatica.md │ │ ├── Portal-Setup-And-Permissions │ │ │ ├── .pages │ │ │ ├── KF_2_The_Setup.md │ │ │ ├── KF_3_KF_Registration.md │ │ │ ├── KF_4_Cavatica_Registration.md │ │ │ ├── KF_5_ConnectingAccounts.md │ │ │ └── KF_6_AccessingData.md │ │ ├── Upload_Data.md │ │ ├── images-kf │ │ │ ├── CGC_1.png │ │ │ ├── CGC_2.png │ │ │ ├── CGC_3.png │ │ │ ├── CGC_4.png │ │ │ ├── CGC_5.png │ │ │ ├── CGC_6.png │ │ │ ├── Cavatica_1.png │ │ │ ├── Cavatica_10.png │ │ │ ├── Cavatica_11.png │ │ │ ├── Cavatica_2.png │ │ │ ├── Cavatica_3.png │ │ │ ├── Cavatica_4.png │ │ │ ├── Cavatica_5.png │ │ │ ├── Cavatica_6.png │ │ │ ├── Cavatica_7.png │ │ │ ├── Cavatica_8.png │ │ │ ├── Cavatica_9.png │ │ │ ├── Clinical_Filters_11.png │ │ │ ├── Data_Download_Cavatica_Download_Links.png │ │ │ ├── Data_Download_Cavatica_Download_Links_2.png │ │ │ ├── Data_Download_File_download_one_by_one.png │ │ │ ├── Data_Download_selecting_files_cavatica.png │ │ │ ├── File_Filters_12.png │ │ │ ├── KF_saveset1.png │ │ │ ├── KF_saveset2.png │ │ │ ├── KF_saveset3.png │ │ │ ├── KF_saveset4.png │ │ │ ├── KF_saveset5.png │ │ │ ├── KF_savevirtualstudy1.png │ │ │ ├── KF_savevirtualstudy2.png │ │ │ ├── KF_savevirtualstudy3.png │ │ │ ├── KF_savevirtualstudy4.png │ │ │ ├── KidsFirstPortal_1.png │ │ │ ├── KidsFirstPortal_10.png │ │ │ ├── KidsFirstPortal_11.png │ │ │ ├── KidsFirstPortal_12.png │ │ │ ├── KidsFirstPortal_13.png │ │ │ ├── KidsFirstPortal_14.png │ │ │ ├── KidsFirstPortal_15.png │ │ │ ├── KidsFirstPortal_16.png │ │ │ ├── KidsFirstPortal_17.png │ │ │ ├── KidsFirstPortal_18.png │ │ │ ├── KidsFirstPortal_19.png │ │ │ ├── KidsFirstPortal_2.png │ │ │ ├── KidsFirstPortal_20.png │ │ │ ├── KidsFirstPortal_21.png │ │ │ ├── KidsFirstPortal_22.png │ │ │ ├── KidsFirstPortal_23.png │ │ │ ├── KidsFirstPortal_24.png │ │ │ ├── KidsFirstPortal_25.png │ │ │ ├── KidsFirstPortal_26.png │ │ │ ├── KidsFirstPortal_27.png │ │ │ ├── KidsFirstPortal_28.png │ │ │ ├── KidsFirstPortal_29.png │ │ │ ├── KidsFirstPortal_3.png │ │ │ ├── KidsFirstPortal_30.png │ │ │ ├── KidsFirstPortal_31.png │ │ │ ├── KidsFirstPortal_32.png │ │ │ ├── KidsFirstPortal_33.png │ │ │ ├── KidsFirstPortal_34.png │ │ │ ├── KidsFirstPortal_35.png │ │ │ ├── KidsFirstPortal_36.png │ │ │ ├── KidsFirstPortal_37.png │ │ │ ├── KidsFirstPortal_38.png │ │ │ ├── KidsFirstPortal_4.png │ │ │ ├── KidsFirstPortal_5.png │ │ │ ├── KidsFirstPortal_6.png │ │ │ ├── KidsFirstPortal_7.png │ │ │ ├── KidsFirstPortal_8.png │ │ │ ├── KidsFirstPortal_9.png │ │ │ ├── access_data_14.png │ │ │ ├── cavatic_homepage_16.png │ │ │ ├── cavatica_login_15.png │ │ │ ├── cavatica_metadata_17.png │ │ │ ├── cavatica_project_created_13.png │ │ │ └── kf_settings_10.png │ │ ├── images │ │ │ ├── Columns_Selection.png │ │ │ ├── Edit_Metadata_Button.png │ │ │ ├── Files_Tab.png │ │ │ ├── Popup_Window.png │ │ │ └── Select_Samples.png │ │ └── index.md │ └── index.md ├── General-Tools │ ├── .pages │ ├── Cheat-Sheets │ │ ├── .pages │ │ ├── bash_cheatsheet.md │ │ ├── conda_cheatsheet.md │ │ ├── index.md │ │ ├── screen_cheatsheet.md │ │ └── snakemake_cheatsheet.md │ ├── Introduction-to-Conda │ │ ├── conda-imgs │ │ │ ├── binder-save-files.png │ │ │ ├── conda-channel.png │ │ │ ├── conda-envs.png │ │ │ ├── conda-init.png │ │ │ └── mini-ana-conda.png │ │ ├── conda1.md │ │ ├── conda2.md │ │ ├── conda3.md │ │ ├── conda4.md │ │ ├── index.md │ │ └── install_conda_tutorial.md │ ├── R-for-RNA-Seq │ │ ├── .pages │ │ ├── images │ │ │ ├── DEGs-1.png │ │ │ ├── DEGs-5.png │ │ │ ├── GTExPortal-1.png │ │ │ ├── GTExPortal-2.png │ │ │ ├── GTExPortal-3.png │ │ │ ├── GTExPortal-4.png │ │ │ ├── GTExPortal-5.png │ │ │ ├── RStudio.png │ │ │ ├── bar1-1.png │ │ │ ├── bar2-1.png │ │ │ ├── bar3-1.png │ │ │ ├── bar4-1.png │ │ │ ├── bar5-1.png │ │ │ ├── boxplot-1.png │ │ │ ├── boxplot2-1.png │ │ │ ├── volcano1-1.png │ │ │ ├── volcano2-1.png │ │ │ ├── volcano3-1.png │ │ │ └── volcano4-1.png │ │ ├── import.md │ │ ├── index.md │ │ ├── intro.md │ │ ├── visualize.md │ │ ├── wrangle.md │ │ └── wrapup.md │ ├── Snakemake │ │ ├── .pages │ │ ├── example_snakefile.md │ │ ├── images-snakemake │ │ │ ├── snakemake_binder_close.png │ │ │ ├── snakemake_binder_download.png │ │ │ ├── snakemake_binder_terminal.png │ │ │ ├── snakemake_downloaddata.jpeg │ │ │ ├── snakemake_nothingtobedone.jpeg │ │ │ ├── snakemake_rule_error_msg.jpeg │ │ │ ├── snakemake_twosteps.jpeg │ │ │ └── vc_workflow_dag.png │ │ ├── index.md │ │ ├── snakemake_0.md │ │ ├── snakemake_1.md │ │ ├── snakemake_2.md │ │ ├── snakemake_3.md │ │ ├── snakemake_4.md │ │ ├── snakemake_5.md │ │ └── snakemake_tutorial_docs │ │ │ ├── Snakefile.py │ │ │ └── environment.yml │ ├── UNIX │ │ ├── .pages │ │ ├── appendix.md │ │ ├── find.md │ │ ├── index.md │ │ ├── intro.md │ │ ├── navigate.md │ │ ├── read.md │ │ ├── redirect.md │ │ └── work.md │ ├── Web-Development │ │ ├── .pages │ │ ├── Javascript-dropdown-box-resources │ │ │ ├── .pages │ │ │ ├── demo_javascript.md │ │ │ └── demo_javascript_rendered.md │ │ ├── Javascript-dropdown-box │ │ │ ├── .pages │ │ │ ├── demo_javascript.md │ │ │ ├── demo_javascript_rendered.md │ │ │ └── javascript_chooser.md │ │ ├── Jekyll_Tutorial.md │ │ ├── Sphinx_Tutorial.md │ │ ├── index.md │ │ ├── javascript_chooser.md │ │ └── mkdocs.md │ ├── index.md │ └── install_conda_tutorial.md ├── LINCS │ ├── .pages │ ├── LINCS_index.md │ └── LINCS_index.rst ├── Release-Notes │ ├── .pages │ ├── April-2022.md │ ├── December-2020.md │ ├── December-2021.md │ ├── February-2021.md │ ├── February-2022.md │ ├── June-2021.md │ ├── October-2020.md │ ├── history.md │ └── index.md ├── Website-Style-Guide │ ├── .pages │ ├── 1WebsiteNavStyle.md │ ├── 2GenTutorialStyle.md │ ├── 3TutorialComponents.md │ ├── 4RecordingStyleGuide.md │ ├── 5PangeoBinderGuide.md │ ├── 6PracticeGithubRepos.md │ ├── 7ReleasePlan.md │ ├── 8TutorialTemplate.md │ └── index.md ├── __pycache__ │ └── hidden_code_block.cpython-38.pyc ├── images │ ├── ARCHS4-YT-1.png │ ├── CFDE-logo-white-outline.png │ ├── CFDE-logo.png │ ├── CFDEwordcloud.png │ ├── IDGPharosYT_1.png │ ├── IDGPharosYT_2.png │ ├── IDG_Logo.png │ ├── PrismExp-YT-1.png │ ├── Release_workflow_training_repo.png │ ├── Simulated_Data_Fastqc.png │ ├── Simulated_Data_t2xlarge.png │ ├── Simulated_Data_t2xlarge_storage.png │ ├── drs-1.png │ ├── drs-2.png │ ├── drs-3.png │ ├── drs-4.png │ ├── drugcentralYT_1.png │ ├── drugshotYT_1.png │ ├── geneshot-YT-1.png │ ├── harmonizome-YT-1.png │ ├── iHMP-tutorial.png │ ├── idg_logo_vertical.png │ ├── kea3YT_1.png │ ├── orcid-error.png │ ├── tigaYT_1.png │ ├── tinx-YT-1.png │ └── workshop-history.png ├── index.md ├── javascripts │ ├── asciinema-player.js │ ├── cls.min.js │ ├── extra.js │ └── medium-zoom.min.js ├── requirements.txt └── stylesheets │ ├── asciinema-player.css │ └── extra.css ├── hackmd ├── AWS.md ├── README.md └── UNIX.md ├── image.png ├── mkdocs.yml ├── requirements.txt └── workshop-resources └── images ├── Screen_Arrangement_AWS.png ├── conda_rstudio_pane_adjust.png ├── conda_workshop_screen_resize.png ├── export_binder_files.png ├── launch_binder_button.png ├── workshop_communication.png └── workshop_communication_2.jpeg /.github/PULL_REQUEST_TEMPLATE.md: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/nih-cfde/training-and-engagement/HEAD/.github/PULL_REQUEST_TEMPLATE.md -------------------------------------------------------------------------------- /.github/action-release-drafter.yml: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/nih-cfde/training-and-engagement/HEAD/.github/action-release-drafter.yml -------------------------------------------------------------------------------- /.github/actions/auto_assign_dev.yml: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/nih-cfde/training-and-engagement/HEAD/.github/actions/auto_assign_dev.yml -------------------------------------------------------------------------------- /.github/actions/auto_assign_stable.yml: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/nih-cfde/training-and-engagement/HEAD/.github/actions/auto_assign_stable.yml -------------------------------------------------------------------------------- /.github/workflows/action-auto-assign-dev.yml: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/nih-cfde/training-and-engagement/HEAD/.github/workflows/action-auto-assign-dev.yml -------------------------------------------------------------------------------- /.github/workflows/action-auto-assign-stable.yml: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/nih-cfde/training-and-engagement/HEAD/.github/workflows/action-auto-assign-stable.yml -------------------------------------------------------------------------------- /.github/workflows/add-new-issue-to-column.yml: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/nih-cfde/training-and-engagement/HEAD/.github/workflows/add-new-issue-to-column.yml -------------------------------------------------------------------------------- /.github/workflows/ci.yml: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/nih-cfde/training-and-engagement/HEAD/.github/workflows/ci.yml -------------------------------------------------------------------------------- /.github/workflows/release-drafter.yml: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/nih-cfde/training-and-engagement/HEAD/.github/workflows/release-drafter.yml -------------------------------------------------------------------------------- /.gitignore: -------------------------------------------------------------------------------- 1 | .DS_Store 2 | source/ 3 | __pycache__/ 4 | build 5 | site/ 6 | -------------------------------------------------------------------------------- /.readthedocs.yaml: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/nih-cfde/training-and-engagement/HEAD/.readthedocs.yaml -------------------------------------------------------------------------------- /Assessments/InitialFAIRshakeDocsAssessment.md: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/nih-cfde/training-and-engagement/HEAD/Assessments/InitialFAIRshakeDocsAssessment.md -------------------------------------------------------------------------------- /CODE_OF_CONDUCT.md: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/nih-cfde/training-and-engagement/HEAD/CODE_OF_CONDUCT.md -------------------------------------------------------------------------------- /CONTRIBUTING.md: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/nih-cfde/training-and-engagement/HEAD/CONTRIBUTING.md -------------------------------------------------------------------------------- /In-Prep/KF_6_Browsing.md: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/nih-cfde/training-and-engagement/HEAD/In-Prep/KF_6_Browsing.md -------------------------------------------------------------------------------- /In-Prep/KF_6_Filters.md: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/nih-cfde/training-and-engagement/HEAD/In-Prep/KF_6_Filters.md -------------------------------------------------------------------------------- /In-Prep/KF_7_PushToCavatica.md: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/nih-cfde/training-and-engagement/HEAD/In-Prep/KF_7_PushToCavatica.md -------------------------------------------------------------------------------- /In-Prep/KF_8_ApplyingForAccess.md: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/nih-cfde/training-and-engagement/HEAD/In-Prep/KF_8_ApplyingForAccess.md -------------------------------------------------------------------------------- /In-Prep/KF_X_FileFormats.md: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/nih-cfde/training-and-engagement/HEAD/In-Prep/KF_X_FileFormats.md -------------------------------------------------------------------------------- /LICENSE.md: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/nih-cfde/training-and-engagement/HEAD/LICENSE.md -------------------------------------------------------------------------------- /README.md: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/nih-cfde/training-and-engagement/HEAD/README.md -------------------------------------------------------------------------------- /TrainingAndEvaluationPlan.md: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/nih-cfde/training-and-engagement/HEAD/TrainingAndEvaluationPlan.md -------------------------------------------------------------------------------- /TrainingPlanV1.md: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/nih-cfde/training-and-engagement/HEAD/TrainingPlanV1.md -------------------------------------------------------------------------------- /TrainingPlanV2.md: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/nih-cfde/training-and-engagement/HEAD/TrainingPlanV2.md -------------------------------------------------------------------------------- /TrainingPlanV3.md: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/nih-cfde/training-and-engagement/HEAD/TrainingPlanV3.md -------------------------------------------------------------------------------- /custom/assets/homepg-images/1.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/nih-cfde/training-and-engagement/HEAD/custom/assets/homepg-images/1.png -------------------------------------------------------------------------------- /custom/assets/homepg-images/10.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/nih-cfde/training-and-engagement/HEAD/custom/assets/homepg-images/10.png -------------------------------------------------------------------------------- /custom/assets/homepg-images/2.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/nih-cfde/training-and-engagement/HEAD/custom/assets/homepg-images/2.png -------------------------------------------------------------------------------- /custom/assets/homepg-images/3.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/nih-cfde/training-and-engagement/HEAD/custom/assets/homepg-images/3.png -------------------------------------------------------------------------------- /custom/assets/homepg-images/4.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/nih-cfde/training-and-engagement/HEAD/custom/assets/homepg-images/4.png -------------------------------------------------------------------------------- /custom/assets/homepg-images/5.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/nih-cfde/training-and-engagement/HEAD/custom/assets/homepg-images/5.png -------------------------------------------------------------------------------- /custom/assets/homepg-images/6.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/nih-cfde/training-and-engagement/HEAD/custom/assets/homepg-images/6.png -------------------------------------------------------------------------------- /custom/assets/homepg-images/7.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/nih-cfde/training-and-engagement/HEAD/custom/assets/homepg-images/7.png -------------------------------------------------------------------------------- /custom/assets/homepg-images/8.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/nih-cfde/training-and-engagement/HEAD/custom/assets/homepg-images/8.png -------------------------------------------------------------------------------- /custom/assets/homepg-images/9.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/nih-cfde/training-and-engagement/HEAD/custom/assets/homepg-images/9.png -------------------------------------------------------------------------------- /custom/assets/homepg-images/iHMP-tutorial.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/nih-cfde/training-and-engagement/HEAD/custom/assets/homepg-images/iHMP-tutorial.png -------------------------------------------------------------------------------- /custom/assets/homepg-images/nih-cf-logo.jpeg: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/nih-cfde/training-and-engagement/HEAD/custom/assets/homepg-images/nih-cf-logo.jpeg -------------------------------------------------------------------------------- /custom/assets/stylesheets/main.min.css: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/nih-cfde/training-and-engagement/HEAD/custom/assets/stylesheets/main.min.css -------------------------------------------------------------------------------- /custom/assets/stylesheets/overrides.min.css: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/nih-cfde/training-and-engagement/HEAD/custom/assets/stylesheets/overrides.min.css -------------------------------------------------------------------------------- /custom/main.html: -------------------------------------------------------------------------------- 1 | {% extends "base.html" %} 2 | -------------------------------------------------------------------------------- /custom/overrides/home.html: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/nih-cfde/training-and-engagement/HEAD/custom/overrides/home.html -------------------------------------------------------------------------------- /custom/overrides/main.html: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/nih-cfde/training-and-engagement/HEAD/custom/overrides/main.html -------------------------------------------------------------------------------- /custom/partials/footer.html: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/nih-cfde/training-and-engagement/HEAD/custom/partials/footer.html -------------------------------------------------------------------------------- /custom/partials/header.html: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/nih-cfde/training-and-engagement/HEAD/custom/partials/header.html -------------------------------------------------------------------------------- /docs/.pages: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/nih-cfde/training-and-engagement/HEAD/docs/.pages -------------------------------------------------------------------------------- /docs/Bioinformatic-Analyses/.pages: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/nih-cfde/training-and-engagement/HEAD/docs/Bioinformatic-Analyses/.pages -------------------------------------------------------------------------------- /docs/Bioinformatic-Analyses/BLAST-Command-Line/BLAST1.md: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/nih-cfde/training-and-engagement/HEAD/docs/Bioinformatic-Analyses/BLAST-Command-Line/BLAST1.md -------------------------------------------------------------------------------- /docs/Bioinformatic-Analyses/BLAST-Command-Line/BLAST2.md: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/nih-cfde/training-and-engagement/HEAD/docs/Bioinformatic-Analyses/BLAST-Command-Line/BLAST2.md -------------------------------------------------------------------------------- /docs/Bioinformatic-Analyses/BLAST-Command-Line/BLAST3.md: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/nih-cfde/training-and-engagement/HEAD/docs/Bioinformatic-Analyses/BLAST-Command-Line/BLAST3.md -------------------------------------------------------------------------------- /docs/Bioinformatic-Analyses/BLAST-Command-Line/BLAST4.md: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/nih-cfde/training-and-engagement/HEAD/docs/Bioinformatic-Analyses/BLAST-Command-Line/BLAST4.md -------------------------------------------------------------------------------- /docs/Bioinformatic-Analyses/GWAS-in-the-cloud/.pages: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/nih-cfde/training-and-engagement/HEAD/docs/Bioinformatic-Analyses/GWAS-in-the-cloud/.pages -------------------------------------------------------------------------------- /docs/Bioinformatic-Analyses/GWAS-in-the-cloud/RStudio.md: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/nih-cfde/training-and-engagement/HEAD/docs/Bioinformatic-Analyses/GWAS-in-the-cloud/RStudio.md -------------------------------------------------------------------------------- /docs/Bioinformatic-Analyses/GWAS-in-the-cloud/analyze.md: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/nih-cfde/training-and-engagement/HEAD/docs/Bioinformatic-Analyses/GWAS-in-the-cloud/analyze.md -------------------------------------------------------------------------------- /docs/Bioinformatic-Analyses/GWAS-in-the-cloud/aws_instance_setup.md: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/nih-cfde/training-and-engagement/HEAD/docs/Bioinformatic-Analyses/GWAS-in-the-cloud/aws_instance_setup.md -------------------------------------------------------------------------------- /docs/Bioinformatic-Analyses/GWAS-in-the-cloud/background.md: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/nih-cfde/training-and-engagement/HEAD/docs/Bioinformatic-Analyses/GWAS-in-the-cloud/background.md -------------------------------------------------------------------------------- /docs/Bioinformatic-Analyses/GWAS-in-the-cloud/download_accessAWS.md: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/nih-cfde/training-and-engagement/HEAD/docs/Bioinformatic-Analyses/GWAS-in-the-cloud/download_accessAWS.md -------------------------------------------------------------------------------- /docs/Bioinformatic-Analyses/GWAS-in-the-cloud/images-gwas/GWAS_General_AWS_Connected.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/nih-cfde/training-and-engagement/HEAD/docs/Bioinformatic-Analyses/GWAS-in-the-cloud/images-gwas/GWAS_General_AWS_Connected.png -------------------------------------------------------------------------------- /docs/Bioinformatic-Analyses/GWAS-in-the-cloud/images-gwas/GWAS_General_AWS_Free_Tier.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/nih-cfde/training-and-engagement/HEAD/docs/Bioinformatic-Analyses/GWAS-in-the-cloud/images-gwas/GWAS_General_AWS_Free_Tier.png -------------------------------------------------------------------------------- /docs/Bioinformatic-Analyses/GWAS-in-the-cloud/images-gwas/GWAS_General_AWS_Updates.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/nih-cfde/training-and-engagement/HEAD/docs/Bioinformatic-Analyses/GWAS-in-the-cloud/images-gwas/GWAS_General_AWS_Updates.png -------------------------------------------------------------------------------- /docs/Bioinformatic-Analyses/GWAS-in-the-cloud/images-gwas/GWAS_General_KeyPair.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/nih-cfde/training-and-engagement/HEAD/docs/Bioinformatic-Analyses/GWAS-in-the-cloud/images-gwas/GWAS_General_KeyPair.png -------------------------------------------------------------------------------- /docs/Bioinformatic-Analyses/GWAS-in-the-cloud/images-gwas/GWAS_General_Launch.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/nih-cfde/training-and-engagement/HEAD/docs/Bioinformatic-Analyses/GWAS-in-the-cloud/images-gwas/GWAS_General_Launch.png -------------------------------------------------------------------------------- /docs/Bioinformatic-Analyses/GWAS-in-the-cloud/images-gwas/GWAS_General_Terminate_AWS.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/nih-cfde/training-and-engagement/HEAD/docs/Bioinformatic-Analyses/GWAS-in-the-cloud/images-gwas/GWAS_General_Terminate_AWS.png -------------------------------------------------------------------------------- /docs/Bioinformatic-Analyses/GWAS-in-the-cloud/images-gwas/GWAS_General_Ubuntu.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/nih-cfde/training-and-engagement/HEAD/docs/Bioinformatic-Analyses/GWAS-in-the-cloud/images-gwas/GWAS_General_Ubuntu.png -------------------------------------------------------------------------------- /docs/Bioinformatic-Analyses/GWAS-in-the-cloud/images-gwas/GWAS_General_aws_connect_your_instance.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/nih-cfde/training-and-engagement/HEAD/docs/Bioinformatic-Analyses/GWAS-in-the-cloud/images-gwas/GWAS_General_aws_connect_your_instance.png -------------------------------------------------------------------------------- /docs/Bioinformatic-Analyses/GWAS-in-the-cloud/images-gwas/GWAS_General_aws_instances_list.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/nih-cfde/training-and-engagement/HEAD/docs/Bioinformatic-Analyses/GWAS-in-the-cloud/images-gwas/GWAS_General_aws_instances_list.png -------------------------------------------------------------------------------- /docs/Bioinformatic-Analyses/GWAS-in-the-cloud/images-gwas/GWAS_General_aws_ohio.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/nih-cfde/training-and-engagement/HEAD/docs/Bioinformatic-Analyses/GWAS-in-the-cloud/images-gwas/GWAS_General_aws_ohio.png -------------------------------------------------------------------------------- /docs/Bioinformatic-Analyses/GWAS-in-the-cloud/images-gwas/GWAS_General_aws_ohio_selection.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/nih-cfde/training-and-engagement/HEAD/docs/Bioinformatic-Analyses/GWAS-in-the-cloud/images-gwas/GWAS_General_aws_ohio_selection.png -------------------------------------------------------------------------------- /docs/Bioinformatic-Analyses/GWAS-in-the-cloud/images-gwas/GWAS_General_launching.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/nih-cfde/training-and-engagement/HEAD/docs/Bioinformatic-Analyses/GWAS-in-the-cloud/images-gwas/GWAS_General_launching.png -------------------------------------------------------------------------------- /docs/Bioinformatic-Analyses/GWAS-in-the-cloud/images-gwas/GWAS_General_publicDNS.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/nih-cfde/training-and-engagement/HEAD/docs/Bioinformatic-Analyses/GWAS-in-the-cloud/images-gwas/GWAS_General_publicDNS.png -------------------------------------------------------------------------------- /docs/Bioinformatic-Analyses/GWAS-in-the-cloud/images-gwas/General_GWAS_coatColor_man.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/nih-cfde/training-and-engagement/HEAD/docs/Bioinformatic-Analyses/GWAS-in-the-cloud/images-gwas/General_GWAS_coatColor_man.png -------------------------------------------------------------------------------- /docs/Bioinformatic-Analyses/GWAS-in-the-cloud/index.md: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/nih-cfde/training-and-engagement/HEAD/docs/Bioinformatic-Analyses/GWAS-in-the-cloud/index.md -------------------------------------------------------------------------------- /docs/Bioinformatic-Analyses/GWAS-in-the-cloud/manhattan.md: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/nih-cfde/training-and-engagement/HEAD/docs/Bioinformatic-Analyses/GWAS-in-the-cloud/manhattan.md -------------------------------------------------------------------------------- /docs/Bioinformatic-Analyses/GWAS-in-the-cloud/plink_install.md: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/nih-cfde/training-and-engagement/HEAD/docs/Bioinformatic-Analyses/GWAS-in-the-cloud/plink_install.md -------------------------------------------------------------------------------- /docs/Bioinformatic-Analyses/GWAS-in-the-cloud/terminate_aws.md: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/nih-cfde/training-and-engagement/HEAD/docs/Bioinformatic-Analyses/GWAS-in-the-cloud/terminate_aws.md -------------------------------------------------------------------------------- /docs/Bioinformatic-Analyses/GWAS-in-the-cloud/vcftools_install.md: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/nih-cfde/training-and-engagement/HEAD/docs/Bioinformatic-Analyses/GWAS-in-the-cloud/vcftools_install.md -------------------------------------------------------------------------------- /docs/Bioinformatic-Analyses/RNAseq-on-Cavatica/.pages: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/nih-cfde/training-and-engagement/HEAD/docs/Bioinformatic-Analyses/RNAseq-on-Cavatica/.pages -------------------------------------------------------------------------------- /docs/Bioinformatic-Analyses/RNAseq-on-Cavatica/rna-seq-images/10_Cavatica.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/nih-cfde/training-and-engagement/HEAD/docs/Bioinformatic-Analyses/RNAseq-on-Cavatica/rna-seq-images/10_Cavatica.png -------------------------------------------------------------------------------- /docs/Bioinformatic-Analyses/RNAseq-on-Cavatica/rna-seq-images/11_Cavatica.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/nih-cfde/training-and-engagement/HEAD/docs/Bioinformatic-Analyses/RNAseq-on-Cavatica/rna-seq-images/11_Cavatica.png -------------------------------------------------------------------------------- /docs/Bioinformatic-Analyses/RNAseq-on-Cavatica/rna-seq-images/12_Cavatica.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/nih-cfde/training-and-engagement/HEAD/docs/Bioinformatic-Analyses/RNAseq-on-Cavatica/rna-seq-images/12_Cavatica.png -------------------------------------------------------------------------------- /docs/Bioinformatic-Analyses/RNAseq-on-Cavatica/rna-seq-images/13_Cavatica.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/nih-cfde/training-and-engagement/HEAD/docs/Bioinformatic-Analyses/RNAseq-on-Cavatica/rna-seq-images/13_Cavatica.png -------------------------------------------------------------------------------- /docs/Bioinformatic-Analyses/RNAseq-on-Cavatica/rna-seq-images/14_Cavatica.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/nih-cfde/training-and-engagement/HEAD/docs/Bioinformatic-Analyses/RNAseq-on-Cavatica/rna-seq-images/14_Cavatica.png -------------------------------------------------------------------------------- /docs/Bioinformatic-Analyses/RNAseq-on-Cavatica/rna-seq-images/15_Cavatica.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/nih-cfde/training-and-engagement/HEAD/docs/Bioinformatic-Analyses/RNAseq-on-Cavatica/rna-seq-images/15_Cavatica.png -------------------------------------------------------------------------------- /docs/Bioinformatic-Analyses/RNAseq-on-Cavatica/rna-seq-images/16_Cavatica.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/nih-cfde/training-and-engagement/HEAD/docs/Bioinformatic-Analyses/RNAseq-on-Cavatica/rna-seq-images/16_Cavatica.png -------------------------------------------------------------------------------- /docs/Bioinformatic-Analyses/RNAseq-on-Cavatica/rna-seq-images/17_Cavatica.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/nih-cfde/training-and-engagement/HEAD/docs/Bioinformatic-Analyses/RNAseq-on-Cavatica/rna-seq-images/17_Cavatica.png -------------------------------------------------------------------------------- /docs/Bioinformatic-Analyses/RNAseq-on-Cavatica/rna-seq-images/18_Cavatica.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/nih-cfde/training-and-engagement/HEAD/docs/Bioinformatic-Analyses/RNAseq-on-Cavatica/rna-seq-images/18_Cavatica.png -------------------------------------------------------------------------------- /docs/Bioinformatic-Analyses/RNAseq-on-Cavatica/rna-seq-images/19_Cavatica.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/nih-cfde/training-and-engagement/HEAD/docs/Bioinformatic-Analyses/RNAseq-on-Cavatica/rna-seq-images/19_Cavatica.png -------------------------------------------------------------------------------- /docs/Bioinformatic-Analyses/RNAseq-on-Cavatica/rna-seq-images/1_KFDRC.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/nih-cfde/training-and-engagement/HEAD/docs/Bioinformatic-Analyses/RNAseq-on-Cavatica/rna-seq-images/1_KFDRC.png -------------------------------------------------------------------------------- /docs/Bioinformatic-Analyses/RNAseq-on-Cavatica/rna-seq-images/20_Cavatica.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/nih-cfde/training-and-engagement/HEAD/docs/Bioinformatic-Analyses/RNAseq-on-Cavatica/rna-seq-images/20_Cavatica.png -------------------------------------------------------------------------------- /docs/Bioinformatic-Analyses/RNAseq-on-Cavatica/rna-seq-images/21_Cavatica.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/nih-cfde/training-and-engagement/HEAD/docs/Bioinformatic-Analyses/RNAseq-on-Cavatica/rna-seq-images/21_Cavatica.png -------------------------------------------------------------------------------- /docs/Bioinformatic-Analyses/RNAseq-on-Cavatica/rna-seq-images/22_Cavatica.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/nih-cfde/training-and-engagement/HEAD/docs/Bioinformatic-Analyses/RNAseq-on-Cavatica/rna-seq-images/22_Cavatica.png -------------------------------------------------------------------------------- /docs/Bioinformatic-Analyses/RNAseq-on-Cavatica/rna-seq-images/2_KFDRC.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/nih-cfde/training-and-engagement/HEAD/docs/Bioinformatic-Analyses/RNAseq-on-Cavatica/rna-seq-images/2_KFDRC.png -------------------------------------------------------------------------------- /docs/Bioinformatic-Analyses/RNAseq-on-Cavatica/rna-seq-images/3_KFDRC.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/nih-cfde/training-and-engagement/HEAD/docs/Bioinformatic-Analyses/RNAseq-on-Cavatica/rna-seq-images/3_KFDRC.png -------------------------------------------------------------------------------- /docs/Bioinformatic-Analyses/RNAseq-on-Cavatica/rna-seq-images/4_KFDRC.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/nih-cfde/training-and-engagement/HEAD/docs/Bioinformatic-Analyses/RNAseq-on-Cavatica/rna-seq-images/4_KFDRC.png -------------------------------------------------------------------------------- /docs/Bioinformatic-Analyses/RNAseq-on-Cavatica/rna-seq-images/5_KFDRC.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/nih-cfde/training-and-engagement/HEAD/docs/Bioinformatic-Analyses/RNAseq-on-Cavatica/rna-seq-images/5_KFDRC.png -------------------------------------------------------------------------------- /docs/Bioinformatic-Analyses/RNAseq-on-Cavatica/rna-seq-images/6_KFDRC.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/nih-cfde/training-and-engagement/HEAD/docs/Bioinformatic-Analyses/RNAseq-on-Cavatica/rna-seq-images/6_KFDRC.png -------------------------------------------------------------------------------- /docs/Bioinformatic-Analyses/RNAseq-on-Cavatica/rna-seq-images/7_KFDRC.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/nih-cfde/training-and-engagement/HEAD/docs/Bioinformatic-Analyses/RNAseq-on-Cavatica/rna-seq-images/7_KFDRC.png -------------------------------------------------------------------------------- /docs/Bioinformatic-Analyses/RNAseq-on-Cavatica/rna-seq-images/8_KFDRC.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/nih-cfde/training-and-engagement/HEAD/docs/Bioinformatic-Analyses/RNAseq-on-Cavatica/rna-seq-images/8_KFDRC.png -------------------------------------------------------------------------------- /docs/Bioinformatic-Analyses/RNAseq-on-Cavatica/rna-seq-images/9_KFDRC.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/nih-cfde/training-and-engagement/HEAD/docs/Bioinformatic-Analyses/RNAseq-on-Cavatica/rna-seq-images/9_KFDRC.png -------------------------------------------------------------------------------- /docs/Bioinformatic-Analyses/RNAseq-on-Cavatica/rna-seq-images/rna-seq-10-01.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/nih-cfde/training-and-engagement/HEAD/docs/Bioinformatic-Analyses/RNAseq-on-Cavatica/rna-seq-images/rna-seq-10-01.png -------------------------------------------------------------------------------- /docs/Bioinformatic-Analyses/RNAseq-on-Cavatica/rna-seq-images/rna-seq-10-02.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/nih-cfde/training-and-engagement/HEAD/docs/Bioinformatic-Analyses/RNAseq-on-Cavatica/rna-seq-images/rna-seq-10-02.png -------------------------------------------------------------------------------- /docs/Bioinformatic-Analyses/RNAseq-on-Cavatica/rna-seq-images/rna-seq-10-03.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/nih-cfde/training-and-engagement/HEAD/docs/Bioinformatic-Analyses/RNAseq-on-Cavatica/rna-seq-images/rna-seq-10-03.png -------------------------------------------------------------------------------- /docs/Bioinformatic-Analyses/RNAseq-on-Cavatica/rna-seq-images/rna-seq-10-04.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/nih-cfde/training-and-engagement/HEAD/docs/Bioinformatic-Analyses/RNAseq-on-Cavatica/rna-seq-images/rna-seq-10-04.png -------------------------------------------------------------------------------- /docs/Bioinformatic-Analyses/RNAseq-on-Cavatica/rna-seq-images/rna-seq-10-05.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/nih-cfde/training-and-engagement/HEAD/docs/Bioinformatic-Analyses/RNAseq-on-Cavatica/rna-seq-images/rna-seq-10-05.png -------------------------------------------------------------------------------- /docs/Bioinformatic-Analyses/RNAseq-on-Cavatica/rna-seq-images/rna-seq-10-06.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/nih-cfde/training-and-engagement/HEAD/docs/Bioinformatic-Analyses/RNAseq-on-Cavatica/rna-seq-images/rna-seq-10-06.png -------------------------------------------------------------------------------- /docs/Bioinformatic-Analyses/RNAseq-on-Cavatica/rna-seq-images/rna-seq-10-07.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/nih-cfde/training-and-engagement/HEAD/docs/Bioinformatic-Analyses/RNAseq-on-Cavatica/rna-seq-images/rna-seq-10-07.png -------------------------------------------------------------------------------- /docs/Bioinformatic-Analyses/RNAseq-on-Cavatica/rna-seq-images/rna-seq-10-08.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/nih-cfde/training-and-engagement/HEAD/docs/Bioinformatic-Analyses/RNAseq-on-Cavatica/rna-seq-images/rna-seq-10-08.png -------------------------------------------------------------------------------- /docs/Bioinformatic-Analyses/RNAseq-on-Cavatica/rna-seq-images/rna-seq-10-09.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/nih-cfde/training-and-engagement/HEAD/docs/Bioinformatic-Analyses/RNAseq-on-Cavatica/rna-seq-images/rna-seq-10-09.png -------------------------------------------------------------------------------- /docs/Bioinformatic-Analyses/RNAseq-on-Cavatica/rna-seq-images/rna-seq-10-10.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/nih-cfde/training-and-engagement/HEAD/docs/Bioinformatic-Analyses/RNAseq-on-Cavatica/rna-seq-images/rna-seq-10-10.png -------------------------------------------------------------------------------- /docs/Bioinformatic-Analyses/RNAseq-on-Cavatica/rna-seq-images/rna-seq-10-11-copy-project-config-settings-allow.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/nih-cfde/training-and-engagement/HEAD/docs/Bioinformatic-Analyses/RNAseq-on-Cavatica/rna-seq-images/rna-seq-10-11-copy-project-config-settings-allow.png -------------------------------------------------------------------------------- /docs/Bioinformatic-Analyses/RNAseq-on-Cavatica/rna-seq-images/rna-seq-10-11-copy-project-config-settings.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/nih-cfde/training-and-engagement/HEAD/docs/Bioinformatic-Analyses/RNAseq-on-Cavatica/rna-seq-images/rna-seq-10-11-copy-project-config-settings.png -------------------------------------------------------------------------------- /docs/Bioinformatic-Analyses/RNAseq-on-Cavatica/rna-seq-images/rna-seq-10-11-copy-project-config.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/nih-cfde/training-and-engagement/HEAD/docs/Bioinformatic-Analyses/RNAseq-on-Cavatica/rna-seq-images/rna-seq-10-11-copy-project-config.png -------------------------------------------------------------------------------- /docs/Bioinformatic-Analyses/RNAseq-on-Cavatica/rna-seq-images/rna-seq-10-11-copy-project-in-project.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/nih-cfde/training-and-engagement/HEAD/docs/Bioinformatic-Analyses/RNAseq-on-Cavatica/rna-seq-images/rna-seq-10-11-copy-project-in-project.png -------------------------------------------------------------------------------- /docs/Bioinformatic-Analyses/RNAseq-on-Cavatica/rna-seq-images/rna-seq-10-11-copy-project-tile.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/nih-cfde/training-and-engagement/HEAD/docs/Bioinformatic-Analyses/RNAseq-on-Cavatica/rna-seq-images/rna-seq-10-11-copy-project-tile.png -------------------------------------------------------------------------------- /docs/Bioinformatic-Analyses/RNAseq-on-Cavatica/rna-seq-images/rna-seq-10-11.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/nih-cfde/training-and-engagement/HEAD/docs/Bioinformatic-Analyses/RNAseq-on-Cavatica/rna-seq-images/rna-seq-10-11.png -------------------------------------------------------------------------------- /docs/Bioinformatic-Analyses/RNAseq-on-Cavatica/rna-seq-images/rna-seq-10-12.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/nih-cfde/training-and-engagement/HEAD/docs/Bioinformatic-Analyses/RNAseq-on-Cavatica/rna-seq-images/rna-seq-10-12.png -------------------------------------------------------------------------------- /docs/Bioinformatic-Analyses/RNAseq-on-Cavatica/rna-seq-images/rna-seq-10-13.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/nih-cfde/training-and-engagement/HEAD/docs/Bioinformatic-Analyses/RNAseq-on-Cavatica/rna-seq-images/rna-seq-10-13.png -------------------------------------------------------------------------------- /docs/Bioinformatic-Analyses/RNAseq-on-Cavatica/rna-seq-images/rna-seq-10-14.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/nih-cfde/training-and-engagement/HEAD/docs/Bioinformatic-Analyses/RNAseq-on-Cavatica/rna-seq-images/rna-seq-10-14.png -------------------------------------------------------------------------------- /docs/Bioinformatic-Analyses/RNAseq-on-Cavatica/rna-seq-images/rna-seq-10-15.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/nih-cfde/training-and-engagement/HEAD/docs/Bioinformatic-Analyses/RNAseq-on-Cavatica/rna-seq-images/rna-seq-10-15.png -------------------------------------------------------------------------------- /docs/Bioinformatic-Analyses/RNAseq-on-Cavatica/rna-seq-images/rna-seq-10-16.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/nih-cfde/training-and-engagement/HEAD/docs/Bioinformatic-Analyses/RNAseq-on-Cavatica/rna-seq-images/rna-seq-10-16.png -------------------------------------------------------------------------------- /docs/Bioinformatic-Analyses/RNAseq-on-Cavatica/rna-seq-images/rna-seq-6-1.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/nih-cfde/training-and-engagement/HEAD/docs/Bioinformatic-Analyses/RNAseq-on-Cavatica/rna-seq-images/rna-seq-6-1.png -------------------------------------------------------------------------------- /docs/Bioinformatic-Analyses/RNAseq-on-Cavatica/rna-seq-images/rna-seq-6-10.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/nih-cfde/training-and-engagement/HEAD/docs/Bioinformatic-Analyses/RNAseq-on-Cavatica/rna-seq-images/rna-seq-6-10.png -------------------------------------------------------------------------------- /docs/Bioinformatic-Analyses/RNAseq-on-Cavatica/rna-seq-images/rna-seq-6-2.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/nih-cfde/training-and-engagement/HEAD/docs/Bioinformatic-Analyses/RNAseq-on-Cavatica/rna-seq-images/rna-seq-6-2.png -------------------------------------------------------------------------------- /docs/Bioinformatic-Analyses/RNAseq-on-Cavatica/rna-seq-images/rna-seq-6-3.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/nih-cfde/training-and-engagement/HEAD/docs/Bioinformatic-Analyses/RNAseq-on-Cavatica/rna-seq-images/rna-seq-6-3.png -------------------------------------------------------------------------------- /docs/Bioinformatic-Analyses/RNAseq-on-Cavatica/rna-seq-images/rna-seq-6-4.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/nih-cfde/training-and-engagement/HEAD/docs/Bioinformatic-Analyses/RNAseq-on-Cavatica/rna-seq-images/rna-seq-6-4.png -------------------------------------------------------------------------------- /docs/Bioinformatic-Analyses/RNAseq-on-Cavatica/rna-seq-images/rna-seq-6-5.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/nih-cfde/training-and-engagement/HEAD/docs/Bioinformatic-Analyses/RNAseq-on-Cavatica/rna-seq-images/rna-seq-6-5.png -------------------------------------------------------------------------------- /docs/Bioinformatic-Analyses/RNAseq-on-Cavatica/rna-seq-images/rna-seq-6-6.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/nih-cfde/training-and-engagement/HEAD/docs/Bioinformatic-Analyses/RNAseq-on-Cavatica/rna-seq-images/rna-seq-6-6.png -------------------------------------------------------------------------------- /docs/Bioinformatic-Analyses/RNAseq-on-Cavatica/rna-seq-images/rna-seq-6-7.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/nih-cfde/training-and-engagement/HEAD/docs/Bioinformatic-Analyses/RNAseq-on-Cavatica/rna-seq-images/rna-seq-6-7.png -------------------------------------------------------------------------------- /docs/Bioinformatic-Analyses/RNAseq-on-Cavatica/rna-seq-images/rna-seq-6-8.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/nih-cfde/training-and-engagement/HEAD/docs/Bioinformatic-Analyses/RNAseq-on-Cavatica/rna-seq-images/rna-seq-6-8.png -------------------------------------------------------------------------------- /docs/Bioinformatic-Analyses/RNAseq-on-Cavatica/rna-seq-images/rna-seq-6-9.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/nih-cfde/training-and-engagement/HEAD/docs/Bioinformatic-Analyses/RNAseq-on-Cavatica/rna-seq-images/rna-seq-6-9.png -------------------------------------------------------------------------------- /docs/Bioinformatic-Analyses/RNAseq-on-Cavatica/rna-seq-images/rna-seq-7-1.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/nih-cfde/training-and-engagement/HEAD/docs/Bioinformatic-Analyses/RNAseq-on-Cavatica/rna-seq-images/rna-seq-7-1.png -------------------------------------------------------------------------------- /docs/Bioinformatic-Analyses/RNAseq-on-Cavatica/rna-seq-images/rna-seq-7-2.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/nih-cfde/training-and-engagement/HEAD/docs/Bioinformatic-Analyses/RNAseq-on-Cavatica/rna-seq-images/rna-seq-7-2.png -------------------------------------------------------------------------------- /docs/Bioinformatic-Analyses/RNAseq-on-Cavatica/rna-seq-images/rna-seq-7-3.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/nih-cfde/training-and-engagement/HEAD/docs/Bioinformatic-Analyses/RNAseq-on-Cavatica/rna-seq-images/rna-seq-7-3.png -------------------------------------------------------------------------------- /docs/Bioinformatic-Analyses/RNAseq-on-Cavatica/rna-seq-images/rna-seq-7-4.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/nih-cfde/training-and-engagement/HEAD/docs/Bioinformatic-Analyses/RNAseq-on-Cavatica/rna-seq-images/rna-seq-7-4.png -------------------------------------------------------------------------------- /docs/Bioinformatic-Analyses/RNAseq-on-Cavatica/rna-seq-images/rna-seq-7-5.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/nih-cfde/training-and-engagement/HEAD/docs/Bioinformatic-Analyses/RNAseq-on-Cavatica/rna-seq-images/rna-seq-7-5.png -------------------------------------------------------------------------------- /docs/Bioinformatic-Analyses/RNAseq-on-Cavatica/rna-seq-images/rna-seq-7-6.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/nih-cfde/training-and-engagement/HEAD/docs/Bioinformatic-Analyses/RNAseq-on-Cavatica/rna-seq-images/rna-seq-7-6.png -------------------------------------------------------------------------------- /docs/Bioinformatic-Analyses/RNAseq-on-Cavatica/rna-seq-images/rna-seq-8-0.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/nih-cfde/training-and-engagement/HEAD/docs/Bioinformatic-Analyses/RNAseq-on-Cavatica/rna-seq-images/rna-seq-8-0.png -------------------------------------------------------------------------------- /docs/Bioinformatic-Analyses/RNAseq-on-Cavatica/rna-seq-images/rna-seq-8-1.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/nih-cfde/training-and-engagement/HEAD/docs/Bioinformatic-Analyses/RNAseq-on-Cavatica/rna-seq-images/rna-seq-8-1.png -------------------------------------------------------------------------------- /docs/Bioinformatic-Analyses/RNAseq-on-Cavatica/rna-seq-images/rna-seq-8-2.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/nih-cfde/training-and-engagement/HEAD/docs/Bioinformatic-Analyses/RNAseq-on-Cavatica/rna-seq-images/rna-seq-8-2.png -------------------------------------------------------------------------------- /docs/Bioinformatic-Analyses/RNAseq-on-Cavatica/rna-seq-images/rna-seq-8-3.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/nih-cfde/training-and-engagement/HEAD/docs/Bioinformatic-Analyses/RNAseq-on-Cavatica/rna-seq-images/rna-seq-8-3.png -------------------------------------------------------------------------------- /docs/Bioinformatic-Analyses/RNAseq-on-Cavatica/rna-seq-images/rna-seq-8-4.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/nih-cfde/training-and-engagement/HEAD/docs/Bioinformatic-Analyses/RNAseq-on-Cavatica/rna-seq-images/rna-seq-8-4.png -------------------------------------------------------------------------------- /docs/Bioinformatic-Analyses/RNAseq-on-Cavatica/rna-seq-images/rna-seq-8-5.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/nih-cfde/training-and-engagement/HEAD/docs/Bioinformatic-Analyses/RNAseq-on-Cavatica/rna-seq-images/rna-seq-8-5.png -------------------------------------------------------------------------------- /docs/Bioinformatic-Analyses/RNAseq-on-Cavatica/rna-seq-images/rna-seq-8-6.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/nih-cfde/training-and-engagement/HEAD/docs/Bioinformatic-Analyses/RNAseq-on-Cavatica/rna-seq-images/rna-seq-8-6.png -------------------------------------------------------------------------------- /docs/Bioinformatic-Analyses/RNAseq-on-Cavatica/rna-seq-images/rna-seq-9-01.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/nih-cfde/training-and-engagement/HEAD/docs/Bioinformatic-Analyses/RNAseq-on-Cavatica/rna-seq-images/rna-seq-9-01.png -------------------------------------------------------------------------------- /docs/Bioinformatic-Analyses/RNAseq-on-Cavatica/rna-seq-images/rna-seq-9-02.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/nih-cfde/training-and-engagement/HEAD/docs/Bioinformatic-Analyses/RNAseq-on-Cavatica/rna-seq-images/rna-seq-9-02.png -------------------------------------------------------------------------------- /docs/Bioinformatic-Analyses/RNAseq-on-Cavatica/rna-seq-images/rna-seq-9-03.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/nih-cfde/training-and-engagement/HEAD/docs/Bioinformatic-Analyses/RNAseq-on-Cavatica/rna-seq-images/rna-seq-9-03.png -------------------------------------------------------------------------------- /docs/Bioinformatic-Analyses/RNAseq-on-Cavatica/rna-seq-images/rna-seq-9-04.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/nih-cfde/training-and-engagement/HEAD/docs/Bioinformatic-Analyses/RNAseq-on-Cavatica/rna-seq-images/rna-seq-9-04.png -------------------------------------------------------------------------------- /docs/Bioinformatic-Analyses/RNAseq-on-Cavatica/rna-seq-images/rna-seq-9-05.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/nih-cfde/training-and-engagement/HEAD/docs/Bioinformatic-Analyses/RNAseq-on-Cavatica/rna-seq-images/rna-seq-9-05.png -------------------------------------------------------------------------------- /docs/Bioinformatic-Analyses/RNAseq-on-Cavatica/rna-seq-images/rna-seq-9-06-01-nih-consent.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/nih-cfde/training-and-engagement/HEAD/docs/Bioinformatic-Analyses/RNAseq-on-Cavatica/rna-seq-images/rna-seq-9-06-01-nih-consent.png -------------------------------------------------------------------------------- /docs/Bioinformatic-Analyses/RNAseq-on-Cavatica/rna-seq-images/rna-seq-9-06-02-gen3-authorize.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/nih-cfde/training-and-engagement/HEAD/docs/Bioinformatic-Analyses/RNAseq-on-Cavatica/rna-seq-images/rna-seq-9-06-02-gen3-authorize.png -------------------------------------------------------------------------------- /docs/Bioinformatic-Analyses/RNAseq-on-Cavatica/rna-seq-images/rna-seq-9-06.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/nih-cfde/training-and-engagement/HEAD/docs/Bioinformatic-Analyses/RNAseq-on-Cavatica/rna-seq-images/rna-seq-9-06.png -------------------------------------------------------------------------------- /docs/Bioinformatic-Analyses/RNAseq-on-Cavatica/rna-seq-images/rna-seq-9-07.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/nih-cfde/training-and-engagement/HEAD/docs/Bioinformatic-Analyses/RNAseq-on-Cavatica/rna-seq-images/rna-seq-9-07.png -------------------------------------------------------------------------------- /docs/Bioinformatic-Analyses/RNAseq-on-Cavatica/rna-seq-images/rna-seq-9-08.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/nih-cfde/training-and-engagement/HEAD/docs/Bioinformatic-Analyses/RNAseq-on-Cavatica/rna-seq-images/rna-seq-9-08.png -------------------------------------------------------------------------------- /docs/Bioinformatic-Analyses/RNAseq-on-Cavatica/rna-seq-images/rna-seq-9-09.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/nih-cfde/training-and-engagement/HEAD/docs/Bioinformatic-Analyses/RNAseq-on-Cavatica/rna-seq-images/rna-seq-9-09.png -------------------------------------------------------------------------------- /docs/Bioinformatic-Analyses/RNAseq-on-Cavatica/rna-seq-images/rna-seq-9-10.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/nih-cfde/training-and-engagement/HEAD/docs/Bioinformatic-Analyses/RNAseq-on-Cavatica/rna-seq-images/rna-seq-9-10.png -------------------------------------------------------------------------------- /docs/Bioinformatic-Analyses/RNAseq-on-Cavatica/rna-seq-images/rna-seq-9-11.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/nih-cfde/training-and-engagement/HEAD/docs/Bioinformatic-Analyses/RNAseq-on-Cavatica/rna-seq-images/rna-seq-9-11.png -------------------------------------------------------------------------------- /docs/Bioinformatic-Analyses/RNAseq-on-Cavatica/rna-seq-images/rna-seq-9-12.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/nih-cfde/training-and-engagement/HEAD/docs/Bioinformatic-Analyses/RNAseq-on-Cavatica/rna-seq-images/rna-seq-9-12.png -------------------------------------------------------------------------------- /docs/Bioinformatic-Analyses/RNAseq-on-Cavatica/rna-seq-images/rna-seq-9-13.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/nih-cfde/training-and-engagement/HEAD/docs/Bioinformatic-Analyses/RNAseq-on-Cavatica/rna-seq-images/rna-seq-9-13.png -------------------------------------------------------------------------------- /docs/Bioinformatic-Analyses/RNAseq-on-Cavatica/rna-seq-images/rna-seq-9-14-AnVIL_transfer_ipynb.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/nih-cfde/training-and-engagement/HEAD/docs/Bioinformatic-Analyses/RNAseq-on-Cavatica/rna-seq-images/rna-seq-9-14-AnVIL_transfer_ipynb.png -------------------------------------------------------------------------------- /docs/Bioinformatic-Analyses/RNAseq-on-Cavatica/rna-seq-images/rna-seq-9-14.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/nih-cfde/training-and-engagement/HEAD/docs/Bioinformatic-Analyses/RNAseq-on-Cavatica/rna-seq-images/rna-seq-9-14.png -------------------------------------------------------------------------------- /docs/Bioinformatic-Analyses/RNAseq-on-Cavatica/rna-seq-images/rna-seq-9-15.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/nih-cfde/training-and-engagement/HEAD/docs/Bioinformatic-Analyses/RNAseq-on-Cavatica/rna-seq-images/rna-seq-9-15.png -------------------------------------------------------------------------------- /docs/Bioinformatic-Analyses/RNAseq-on-Cavatica/rna-seq-images/rna-seq-9-16.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/nih-cfde/training-and-engagement/HEAD/docs/Bioinformatic-Analyses/RNAseq-on-Cavatica/rna-seq-images/rna-seq-9-16.png -------------------------------------------------------------------------------- /docs/Bioinformatic-Analyses/RNAseq-on-Cavatica/rna-seq-images/rna-seq-9-17.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/nih-cfde/training-and-engagement/HEAD/docs/Bioinformatic-Analyses/RNAseq-on-Cavatica/rna-seq-images/rna-seq-9-17.png -------------------------------------------------------------------------------- /docs/Bioinformatic-Analyses/RNAseq-on-Cavatica/rna-seq-images/rna-seq-9-18.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/nih-cfde/training-and-engagement/HEAD/docs/Bioinformatic-Analyses/RNAseq-on-Cavatica/rna-seq-images/rna-seq-9-18.png -------------------------------------------------------------------------------- /docs/Bioinformatic-Analyses/RNAseq-on-Cavatica/rna-seq-images/rna-seq-9-19.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/nih-cfde/training-and-engagement/HEAD/docs/Bioinformatic-Analyses/RNAseq-on-Cavatica/rna-seq-images/rna-seq-9-19.png -------------------------------------------------------------------------------- /docs/Bioinformatic-Analyses/RNAseq-on-Cavatica/rna-seq-images/rna-seq-9-20.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/nih-cfde/training-and-engagement/HEAD/docs/Bioinformatic-Analyses/RNAseq-on-Cavatica/rna-seq-images/rna-seq-9-20.png -------------------------------------------------------------------------------- /docs/Bioinformatic-Analyses/RNAseq-on-Cavatica/rna-seq-images/rna-seq-9-21.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/nih-cfde/training-and-engagement/HEAD/docs/Bioinformatic-Analyses/RNAseq-on-Cavatica/rna-seq-images/rna-seq-9-21.png -------------------------------------------------------------------------------- /docs/Bioinformatic-Analyses/RNAseq-on-Cavatica/rna-seq-images/rna-seq-workflow.jpeg: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/nih-cfde/training-and-engagement/HEAD/docs/Bioinformatic-Analyses/RNAseq-on-Cavatica/rna-seq-images/rna-seq-workflow.jpeg -------------------------------------------------------------------------------- /docs/Bioinformatic-Analyses/RNAseq-on-Cavatica/rna-seq-supporting-docs/.Rapp.history: -------------------------------------------------------------------------------- 1 | -------------------------------------------------------------------------------- /docs/Bioinformatic-Analyses/RNAseq-on-Cavatica/rna-seq-supporting-docs/.Rhistory: -------------------------------------------------------------------------------- 1 | -------------------------------------------------------------------------------- /docs/Bioinformatic-Analyses/RNAseq-on-Cavatica/rna-seq-supporting-docs/Cancer_DGE_Analysis.R: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/nih-cfde/training-and-engagement/HEAD/docs/Bioinformatic-Analyses/RNAseq-on-Cavatica/rna-seq-supporting-docs/Cancer_DGE_Analysis.R -------------------------------------------------------------------------------- /docs/Bioinformatic-Analyses/RNAseq-on-Cavatica/rna-seq-supporting-docs/Cancer_DGE_Analysis_Automate.R: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/nih-cfde/training-and-engagement/HEAD/docs/Bioinformatic-Analyses/RNAseq-on-Cavatica/rna-seq-supporting-docs/Cancer_DGE_Analysis_Automate.R -------------------------------------------------------------------------------- /docs/Bioinformatic-Analyses/RNAseq-on-Cavatica/rna_seq_01.md: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/nih-cfde/training-and-engagement/HEAD/docs/Bioinformatic-Analyses/RNAseq-on-Cavatica/rna_seq_01.md -------------------------------------------------------------------------------- /docs/Bioinformatic-Analyses/RNAseq-on-Cavatica/rna_seq_02.md: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/nih-cfde/training-and-engagement/HEAD/docs/Bioinformatic-Analyses/RNAseq-on-Cavatica/rna_seq_02.md -------------------------------------------------------------------------------- /docs/Bioinformatic-Analyses/RNAseq-on-Cavatica/rna_seq_03.md: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/nih-cfde/training-and-engagement/HEAD/docs/Bioinformatic-Analyses/RNAseq-on-Cavatica/rna_seq_03.md -------------------------------------------------------------------------------- /docs/Bioinformatic-Analyses/RNAseq-on-Cavatica/rna_seq_04.md: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/nih-cfde/training-and-engagement/HEAD/docs/Bioinformatic-Analyses/RNAseq-on-Cavatica/rna_seq_04.md -------------------------------------------------------------------------------- /docs/Bioinformatic-Analyses/RNAseq-on-Cavatica/rna_seq_05.md: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/nih-cfde/training-and-engagement/HEAD/docs/Bioinformatic-Analyses/RNAseq-on-Cavatica/rna_seq_05.md -------------------------------------------------------------------------------- /docs/Bioinformatic-Analyses/RNAseq-on-Cavatica/rna_seq_06.md: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/nih-cfde/training-and-engagement/HEAD/docs/Bioinformatic-Analyses/RNAseq-on-Cavatica/rna_seq_06.md -------------------------------------------------------------------------------- /docs/Bioinformatic-Analyses/RNAseq-on-Cavatica/rna_seq_07.md: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/nih-cfde/training-and-engagement/HEAD/docs/Bioinformatic-Analyses/RNAseq-on-Cavatica/rna_seq_07.md -------------------------------------------------------------------------------- /docs/Bioinformatic-Analyses/RNAseq-on-Cavatica/rna_seq_08.md: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/nih-cfde/training-and-engagement/HEAD/docs/Bioinformatic-Analyses/RNAseq-on-Cavatica/rna_seq_08.md -------------------------------------------------------------------------------- /docs/Bioinformatic-Analyses/RNAseq-on-Cavatica/rna_seq_09.md: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/nih-cfde/training-and-engagement/HEAD/docs/Bioinformatic-Analyses/RNAseq-on-Cavatica/rna_seq_09.md -------------------------------------------------------------------------------- /docs/Bioinformatic-Analyses/RNAseq-on-Cavatica/rna_seq_10.md: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/nih-cfde/training-and-engagement/HEAD/docs/Bioinformatic-Analyses/RNAseq-on-Cavatica/rna_seq_10.md -------------------------------------------------------------------------------- /docs/Bioinformatic-Analyses/Simulate_Illumina_Reads.md: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/nih-cfde/training-and-engagement/HEAD/docs/Bioinformatic-Analyses/Simulate_Illumina_Reads.md -------------------------------------------------------------------------------- /docs/Bioinformatic-Analyses/index.md: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/nih-cfde/training-and-engagement/HEAD/docs/Bioinformatic-Analyses/index.md -------------------------------------------------------------------------------- /docs/CFDE-Internal-Training/.pages: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/nih-cfde/training-and-engagement/HEAD/docs/CFDE-Internal-Training/.pages -------------------------------------------------------------------------------- /docs/CFDE-Internal-Training/MIME-type/.pages: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/nih-cfde/training-and-engagement/HEAD/docs/CFDE-Internal-Training/MIME-type/.pages -------------------------------------------------------------------------------- /docs/CFDE-Internal-Training/MIME-type/Example_data_files.md: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/nih-cfde/training-and-engagement/HEAD/docs/CFDE-Internal-Training/MIME-type/Example_data_files.md -------------------------------------------------------------------------------- /docs/CFDE-Internal-Training/MIME-type/Intro_MIME_type.md: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/nih-cfde/training-and-engagement/HEAD/docs/CFDE-Internal-Training/MIME-type/Intro_MIME_type.md -------------------------------------------------------------------------------- /docs/CFDE-Internal-Training/MIME-type/Multiple_file_MIME.md: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/nih-cfde/training-and-engagement/HEAD/docs/CFDE-Internal-Training/MIME-type/Multiple_file_MIME.md -------------------------------------------------------------------------------- /docs/CFDE-Internal-Training/MIME-type/Unexpected_behavior.md: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/nih-cfde/training-and-engagement/HEAD/docs/CFDE-Internal-Training/MIME-type/Unexpected_behavior.md -------------------------------------------------------------------------------- /docs/CFDE-Internal-Training/MIME-type/file.md: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/nih-cfde/training-and-engagement/HEAD/docs/CFDE-Internal-Training/MIME-type/file.md -------------------------------------------------------------------------------- /docs/CFDE-Internal-Training/MIME-type/images/KFDRC_file_ID_upload.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/nih-cfde/training-and-engagement/HEAD/docs/CFDE-Internal-Training/MIME-type/images/KFDRC_file_ID_upload.png -------------------------------------------------------------------------------- /docs/CFDE-Internal-Training/MIME-type/images/KFDRC_search_by_file_ID.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/nih-cfde/training-and-engagement/HEAD/docs/CFDE-Internal-Training/MIME-type/images/KFDRC_search_by_file_ID.png -------------------------------------------------------------------------------- /docs/CFDE-Internal-Training/MIME-type/images/MIME_type_example_files.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/nih-cfde/training-and-engagement/HEAD/docs/CFDE-Internal-Training/MIME-type/images/MIME_type_example_files.png -------------------------------------------------------------------------------- /docs/CFDE-Internal-Training/MIME-type/index.md: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/nih-cfde/training-and-engagement/HEAD/docs/CFDE-Internal-Training/MIME-type/index.md -------------------------------------------------------------------------------- /docs/CFDE-Internal-Training/MIME-type/mime_supplementary_files/KF_File_ID.csv: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/nih-cfde/training-and-engagement/HEAD/docs/CFDE-Internal-Training/MIME-type/mime_supplementary_files/KF_File_ID.csv -------------------------------------------------------------------------------- /docs/CFDE-Internal-Training/MIME-type/mime_supplementary_files/file_screencast.cast: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/nih-cfde/training-and-engagement/HEAD/docs/CFDE-Internal-Training/MIME-type/mime_supplementary_files/file_screencast.cast -------------------------------------------------------------------------------- /docs/CFDE-Internal-Training/MIME-type/mime_supplementary_files/mimetype_screencast.cast: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/nih-cfde/training-and-engagement/HEAD/docs/CFDE-Internal-Training/MIME-type/mime_supplementary_files/mimetype_screencast.cast -------------------------------------------------------------------------------- /docs/CFDE-Internal-Training/MIME-type/mime_supplementary_files/siegfried_screencast.cast: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/nih-cfde/training-and-engagement/HEAD/docs/CFDE-Internal-Training/MIME-type/mime_supplementary_files/siegfried_screencast.cast -------------------------------------------------------------------------------- /docs/CFDE-Internal-Training/MIME-type/mime_supplementary_files/xdg-mime_screencast.cast: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/nih-cfde/training-and-engagement/HEAD/docs/CFDE-Internal-Training/MIME-type/mime_supplementary_files/xdg-mime_screencast.cast -------------------------------------------------------------------------------- /docs/CFDE-Internal-Training/MIME-type/mimetype.md: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/nih-cfde/training-and-engagement/HEAD/docs/CFDE-Internal-Training/MIME-type/mimetype.md -------------------------------------------------------------------------------- /docs/CFDE-Internal-Training/MIME-type/siegfried.md: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/nih-cfde/training-and-engagement/HEAD/docs/CFDE-Internal-Training/MIME-type/siegfried.md -------------------------------------------------------------------------------- /docs/CFDE-Internal-Training/MIME-type/xdg-utils.md: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/nih-cfde/training-and-engagement/HEAD/docs/CFDE-Internal-Training/MIME-type/xdg-utils.md -------------------------------------------------------------------------------- /docs/CFDE-Internal-Training/ProtectedBranch_HowTo.md: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/nih-cfde/training-and-engagement/HEAD/docs/CFDE-Internal-Training/ProtectedBranch_HowTo.md -------------------------------------------------------------------------------- /docs/CFDE-Internal-Training/cfdebot_website_editing.md: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/nih-cfde/training-and-engagement/HEAD/docs/CFDE-Internal-Training/cfdebot_website_editing.md -------------------------------------------------------------------------------- /docs/CFDE-Internal-Training/github_auth_setup.md: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/nih-cfde/training-and-engagement/HEAD/docs/CFDE-Internal-Training/github_auth_setup.md -------------------------------------------------------------------------------- /docs/CFDE-Internal-Training/images-cfdebot/github-branch-stable.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/nih-cfde/training-and-engagement/HEAD/docs/CFDE-Internal-Training/images-cfdebot/github-branch-stable.png -------------------------------------------------------------------------------- /docs/CFDE-Internal-Training/images-cfdebot/github-new-branch.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/nih-cfde/training-and-engagement/HEAD/docs/CFDE-Internal-Training/images-cfdebot/github-new-branch.png -------------------------------------------------------------------------------- /docs/CFDE-Internal-Training/images-github-auth/0-account-security.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/nih-cfde/training-and-engagement/HEAD/docs/CFDE-Internal-Training/images-github-auth/0-account-security.png -------------------------------------------------------------------------------- /docs/CFDE-Internal-Training/images-github-auth/0-developer-settings.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/nih-cfde/training-and-engagement/HEAD/docs/CFDE-Internal-Training/images-github-auth/0-developer-settings.png -------------------------------------------------------------------------------- /docs/CFDE-Internal-Training/images-github-auth/1-two-factor-auth.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/nih-cfde/training-and-engagement/HEAD/docs/CFDE-Internal-Training/images-github-auth/1-two-factor-auth.png -------------------------------------------------------------------------------- /docs/CFDE-Internal-Training/images-github-auth/2-two-factor-auth-phone-set-up.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/nih-cfde/training-and-engagement/HEAD/docs/CFDE-Internal-Training/images-github-auth/2-two-factor-auth-phone-set-up.png -------------------------------------------------------------------------------- /docs/CFDE-Internal-Training/images-github-auth/3-save-recovery-codes.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/nih-cfde/training-and-engagement/HEAD/docs/CFDE-Internal-Training/images-github-auth/3-save-recovery-codes.png -------------------------------------------------------------------------------- /docs/CFDE-Internal-Training/images-github-auth/4-generate-pat.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/nih-cfde/training-and-engagement/HEAD/docs/CFDE-Internal-Training/images-github-auth/4-generate-pat.png -------------------------------------------------------------------------------- /docs/CFDE-Internal-Training/images-github-auth/5-personal-access-token.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/nih-cfde/training-and-engagement/HEAD/docs/CFDE-Internal-Training/images-github-auth/5-personal-access-token.png -------------------------------------------------------------------------------- /docs/CFDE-Internal-Training/index.md: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/nih-cfde/training-and-engagement/HEAD/docs/CFDE-Internal-Training/index.md -------------------------------------------------------------------------------- /docs/Cloud-Platforms/.pages: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/nih-cfde/training-and-engagement/HEAD/docs/Cloud-Platforms/.pages -------------------------------------------------------------------------------- /docs/Cloud-Platforms/Introduction-to-AWS/.pages: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/nih-cfde/training-and-engagement/HEAD/docs/Cloud-Platforms/Introduction-to-AWS/.pages -------------------------------------------------------------------------------- /docs/Cloud-Platforms/Introduction-to-AWS/aws1.md: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/nih-cfde/training-and-engagement/HEAD/docs/Cloud-Platforms/Introduction-to-AWS/aws1.md -------------------------------------------------------------------------------- /docs/Cloud-Platforms/Introduction-to-AWS/aws2.md: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/nih-cfde/training-and-engagement/HEAD/docs/Cloud-Platforms/Introduction-to-AWS/aws2.md -------------------------------------------------------------------------------- /docs/Cloud-Platforms/Introduction-to-AWS/aws3.md: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/nih-cfde/training-and-engagement/HEAD/docs/Cloud-Platforms/Introduction-to-AWS/aws3.md -------------------------------------------------------------------------------- /docs/Cloud-Platforms/Introduction-to-AWS/aws4.md: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/nih-cfde/training-and-engagement/HEAD/docs/Cloud-Platforms/Introduction-to-AWS/aws4.md -------------------------------------------------------------------------------- /docs/Cloud-Platforms/Introduction-to-AWS/images-aws/Mobaxterm_transfer1.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/nih-cfde/training-and-engagement/HEAD/docs/Cloud-Platforms/Introduction-to-AWS/images-aws/Mobaxterm_transfer1.png -------------------------------------------------------------------------------- /docs/Cloud-Platforms/Introduction-to-AWS/images-aws/Mobaxterm_transfer2.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/nih-cfde/training-and-engagement/HEAD/docs/Cloud-Platforms/Introduction-to-AWS/images-aws/Mobaxterm_transfer2.png -------------------------------------------------------------------------------- /docs/Cloud-Platforms/Introduction-to-AWS/images-aws/Terminate.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/nih-cfde/training-and-engagement/HEAD/docs/Cloud-Platforms/Introduction-to-AWS/images-aws/Terminate.png -------------------------------------------------------------------------------- /docs/Cloud-Platforms/Introduction-to-AWS/images-aws/aws_1.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/nih-cfde/training-and-engagement/HEAD/docs/Cloud-Platforms/Introduction-to-AWS/images-aws/aws_1.png -------------------------------------------------------------------------------- /docs/Cloud-Platforms/Introduction-to-AWS/images-aws/aws_10.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/nih-cfde/training-and-engagement/HEAD/docs/Cloud-Platforms/Introduction-to-AWS/images-aws/aws_10.png -------------------------------------------------------------------------------- /docs/Cloud-Platforms/Introduction-to-AWS/images-aws/aws_11.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/nih-cfde/training-and-engagement/HEAD/docs/Cloud-Platforms/Introduction-to-AWS/images-aws/aws_11.png -------------------------------------------------------------------------------- /docs/Cloud-Platforms/Introduction-to-AWS/images-aws/aws_12.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/nih-cfde/training-and-engagement/HEAD/docs/Cloud-Platforms/Introduction-to-AWS/images-aws/aws_12.png -------------------------------------------------------------------------------- /docs/Cloud-Platforms/Introduction-to-AWS/images-aws/aws_2.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/nih-cfde/training-and-engagement/HEAD/docs/Cloud-Platforms/Introduction-to-AWS/images-aws/aws_2.png -------------------------------------------------------------------------------- /docs/Cloud-Platforms/Introduction-to-AWS/images-aws/aws_3.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/nih-cfde/training-and-engagement/HEAD/docs/Cloud-Platforms/Introduction-to-AWS/images-aws/aws_3.png -------------------------------------------------------------------------------- /docs/Cloud-Platforms/Introduction-to-AWS/images-aws/aws_4.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/nih-cfde/training-and-engagement/HEAD/docs/Cloud-Platforms/Introduction-to-AWS/images-aws/aws_4.png -------------------------------------------------------------------------------- /docs/Cloud-Platforms/Introduction-to-AWS/images-aws/aws_5.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/nih-cfde/training-and-engagement/HEAD/docs/Cloud-Platforms/Introduction-to-AWS/images-aws/aws_5.png -------------------------------------------------------------------------------- /docs/Cloud-Platforms/Introduction-to-AWS/images-aws/aws_6.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/nih-cfde/training-and-engagement/HEAD/docs/Cloud-Platforms/Introduction-to-AWS/images-aws/aws_6.png -------------------------------------------------------------------------------- /docs/Cloud-Platforms/Introduction-to-AWS/images-aws/aws_7.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/nih-cfde/training-and-engagement/HEAD/docs/Cloud-Platforms/Introduction-to-AWS/images-aws/aws_7.png -------------------------------------------------------------------------------- /docs/Cloud-Platforms/Introduction-to-AWS/images-aws/aws_8.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/nih-cfde/training-and-engagement/HEAD/docs/Cloud-Platforms/Introduction-to-AWS/images-aws/aws_8.png -------------------------------------------------------------------------------- /docs/Cloud-Platforms/Introduction-to-AWS/images-aws/aws_9.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/nih-cfde/training-and-engagement/HEAD/docs/Cloud-Platforms/Introduction-to-AWS/images-aws/aws_9.png -------------------------------------------------------------------------------- /docs/Cloud-Platforms/Introduction-to-AWS/images-aws/aws_launch.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/nih-cfde/training-and-engagement/HEAD/docs/Cloud-Platforms/Introduction-to-AWS/images-aws/aws_launch.png -------------------------------------------------------------------------------- /docs/Cloud-Platforms/Introduction-to-AWS/images-aws/connect_1.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/nih-cfde/training-and-engagement/HEAD/docs/Cloud-Platforms/Introduction-to-AWS/images-aws/connect_1.png -------------------------------------------------------------------------------- /docs/Cloud-Platforms/Introduction-to-AWS/images-aws/connect_2.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/nih-cfde/training-and-engagement/HEAD/docs/Cloud-Platforms/Introduction-to-AWS/images-aws/connect_2.png -------------------------------------------------------------------------------- /docs/Cloud-Platforms/Introduction-to-AWS/images-aws/connect_3.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/nih-cfde/training-and-engagement/HEAD/docs/Cloud-Platforms/Introduction-to-AWS/images-aws/connect_3.png -------------------------------------------------------------------------------- /docs/Cloud-Platforms/Introduction-to-AWS/images-aws/connect_4.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/nih-cfde/training-and-engagement/HEAD/docs/Cloud-Platforms/Introduction-to-AWS/images-aws/connect_4.png -------------------------------------------------------------------------------- /docs/Cloud-Platforms/Introduction-to-AWS/images-aws/mobaxterm_1.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/nih-cfde/training-and-engagement/HEAD/docs/Cloud-Platforms/Introduction-to-AWS/images-aws/mobaxterm_1.png -------------------------------------------------------------------------------- /docs/Cloud-Platforms/Introduction-to-AWS/images-aws/mobaxterm_2.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/nih-cfde/training-and-engagement/HEAD/docs/Cloud-Platforms/Introduction-to-AWS/images-aws/mobaxterm_2.png -------------------------------------------------------------------------------- /docs/Cloud-Platforms/Introduction-to-AWS/images-aws/mobaxterm_3.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/nih-cfde/training-and-engagement/HEAD/docs/Cloud-Platforms/Introduction-to-AWS/images-aws/mobaxterm_3.png -------------------------------------------------------------------------------- /docs/Cloud-Platforms/Introduction-to-AWS/images-aws/mobaxterm_3_2.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/nih-cfde/training-and-engagement/HEAD/docs/Cloud-Platforms/Introduction-to-AWS/images-aws/mobaxterm_3_2.png -------------------------------------------------------------------------------- /docs/Cloud-Platforms/Introduction-to-AWS/images-aws/mobaxterm_4.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/nih-cfde/training-and-engagement/HEAD/docs/Cloud-Platforms/Introduction-to-AWS/images-aws/mobaxterm_4.png -------------------------------------------------------------------------------- /docs/Cloud-Platforms/Introduction-to-AWS/images-aws/original_ssh_terminal.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/nih-cfde/training-and-engagement/HEAD/docs/Cloud-Platforms/Introduction-to-AWS/images-aws/original_ssh_terminal.png -------------------------------------------------------------------------------- /docs/Cloud-Platforms/Introduction-to-AWS/index.md: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/nih-cfde/training-and-engagement/HEAD/docs/Cloud-Platforms/Introduction-to-AWS/index.md -------------------------------------------------------------------------------- /docs/Cloud-Platforms/Introduction-to-GCP/.pages: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/nih-cfde/training-and-engagement/HEAD/docs/Cloud-Platforms/Introduction-to-GCP/.pages -------------------------------------------------------------------------------- /docs/Cloud-Platforms/Introduction-to-GCP/gcp1.md: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/nih-cfde/training-and-engagement/HEAD/docs/Cloud-Platforms/Introduction-to-GCP/gcp1.md -------------------------------------------------------------------------------- /docs/Cloud-Platforms/Introduction-to-GCP/gcp2.md: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/nih-cfde/training-and-engagement/HEAD/docs/Cloud-Platforms/Introduction-to-GCP/gcp2.md -------------------------------------------------------------------------------- /docs/Cloud-Platforms/Introduction-to-GCP/gcp3.md: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/nih-cfde/training-and-engagement/HEAD/docs/Cloud-Platforms/Introduction-to-GCP/gcp3.md -------------------------------------------------------------------------------- /docs/Cloud-Platforms/Introduction-to-GCP/gcp4.md: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/nih-cfde/training-and-engagement/HEAD/docs/Cloud-Platforms/Introduction-to-GCP/gcp4.md -------------------------------------------------------------------------------- /docs/Cloud-Platforms/Introduction-to-GCP/gcp_images/gcp_activatefreetrial.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/nih-cfde/training-and-engagement/HEAD/docs/Cloud-Platforms/Introduction-to-GCP/gcp_images/gcp_activatefreetrial.png -------------------------------------------------------------------------------- /docs/Cloud-Platforms/Introduction-to-GCP/gcp_images/gcp_authorise_shell.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/nih-cfde/training-and-engagement/HEAD/docs/Cloud-Platforms/Introduction-to-GCP/gcp_images/gcp_authorise_shell.png -------------------------------------------------------------------------------- /docs/Cloud-Platforms/Introduction-to-GCP/gcp_images/gcp_authorise_shell2.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/nih-cfde/training-and-engagement/HEAD/docs/Cloud-Platforms/Introduction-to-GCP/gcp_images/gcp_authorise_shell2.png -------------------------------------------------------------------------------- /docs/Cloud-Platforms/Introduction-to-GCP/gcp_images/gcp_billingaccountmember.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/nih-cfde/training-and-engagement/HEAD/docs/Cloud-Platforms/Introduction-to-GCP/gcp_images/gcp_billingaccountmember.png -------------------------------------------------------------------------------- /docs/Cloud-Platforms/Introduction-to-GCP/gcp_images/gcp_billingenable.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/nih-cfde/training-and-engagement/HEAD/docs/Cloud-Platforms/Introduction-to-GCP/gcp_images/gcp_billingenable.png -------------------------------------------------------------------------------- /docs/Cloud-Platforms/Introduction-to-GCP/gcp_images/gcp_billingoverview.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/nih-cfde/training-and-engagement/HEAD/docs/Cloud-Platforms/Introduction-to-GCP/gcp_images/gcp_billingoverview.png -------------------------------------------------------------------------------- /docs/Cloud-Platforms/Introduction-to-GCP/gcp_images/gcp_billingsetup.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/nih-cfde/training-and-engagement/HEAD/docs/Cloud-Platforms/Introduction-to-GCP/gcp_images/gcp_billingsetup.png -------------------------------------------------------------------------------- /docs/Cloud-Platforms/Introduction-to-GCP/gcp_images/gcp_billingtab.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/nih-cfde/training-and-engagement/HEAD/docs/Cloud-Platforms/Introduction-to-GCP/gcp_images/gcp_billingtab.png -------------------------------------------------------------------------------- /docs/Cloud-Platforms/Introduction-to-GCP/gcp_images/gcp_billinrename.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/nih-cfde/training-and-engagement/HEAD/docs/Cloud-Platforms/Introduction-to-GCP/gcp_images/gcp_billinrename.png -------------------------------------------------------------------------------- /docs/Cloud-Platforms/Introduction-to-GCP/gcp_images/gcp_blastfiles.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/nih-cfde/training-and-engagement/HEAD/docs/Cloud-Platforms/Introduction-to-GCP/gcp_images/gcp_blastfiles.png -------------------------------------------------------------------------------- /docs/Cloud-Platforms/Introduction-to-GCP/gcp_images/gcp_bootdisk.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/nih-cfde/training-and-engagement/HEAD/docs/Cloud-Platforms/Introduction-to-GCP/gcp_images/gcp_bootdisk.png -------------------------------------------------------------------------------- /docs/Cloud-Platforms/Introduction-to-GCP/gcp_images/gcp_connect1.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/nih-cfde/training-and-engagement/HEAD/docs/Cloud-Platforms/Introduction-to-GCP/gcp_images/gcp_connect1.png -------------------------------------------------------------------------------- /docs/Cloud-Platforms/Introduction-to-GCP/gcp_images/gcp_console.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/nih-cfde/training-and-engagement/HEAD/docs/Cloud-Platforms/Introduction-to-GCP/gcp_images/gcp_console.png -------------------------------------------------------------------------------- /docs/Cloud-Platforms/Introduction-to-GCP/gcp_images/gcp_createproject.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/nih-cfde/training-and-engagement/HEAD/docs/Cloud-Platforms/Introduction-to-GCP/gcp_images/gcp_createproject.png -------------------------------------------------------------------------------- /docs/Cloud-Platforms/Introduction-to-GCP/gcp_images/gcp_createvm.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/nih-cfde/training-and-engagement/HEAD/docs/Cloud-Platforms/Introduction-to-GCP/gcp_images/gcp_createvm.png -------------------------------------------------------------------------------- /docs/Cloud-Platforms/Introduction-to-GCP/gcp_images/gcp_gcshell.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/nih-cfde/training-and-engagement/HEAD/docs/Cloud-Platforms/Introduction-to-GCP/gcp_images/gcp_gcshell.png -------------------------------------------------------------------------------- /docs/Cloud-Platforms/Introduction-to-GCP/gcp_images/gcp_login.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/nih-cfde/training-and-engagement/HEAD/docs/Cloud-Platforms/Introduction-to-GCP/gcp_images/gcp_login.png -------------------------------------------------------------------------------- /docs/Cloud-Platforms/Introduction-to-GCP/gcp_images/gcp_project1.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/nih-cfde/training-and-engagement/HEAD/docs/Cloud-Platforms/Introduction-to-GCP/gcp_images/gcp_project1.png -------------------------------------------------------------------------------- /docs/Cloud-Platforms/Introduction-to-GCP/gcp_images/gcp_project2.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/nih-cfde/training-and-engagement/HEAD/docs/Cloud-Platforms/Introduction-to-GCP/gcp_images/gcp_project2.png -------------------------------------------------------------------------------- /docs/Cloud-Platforms/Introduction-to-GCP/gcp_images/gcp_projectid.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/nih-cfde/training-and-engagement/HEAD/docs/Cloud-Platforms/Introduction-to-GCP/gcp_images/gcp_projectid.png -------------------------------------------------------------------------------- /docs/Cloud-Platforms/Introduction-to-GCP/gcp_images/gcp_reconnect.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/nih-cfde/training-and-engagement/HEAD/docs/Cloud-Platforms/Introduction-to-GCP/gcp_images/gcp_reconnect.png -------------------------------------------------------------------------------- /docs/Cloud-Platforms/Introduction-to-GCP/gcp_images/gcp_shell1.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/nih-cfde/training-and-engagement/HEAD/docs/Cloud-Platforms/Introduction-to-GCP/gcp_images/gcp_shell1.png -------------------------------------------------------------------------------- /docs/Cloud-Platforms/Introduction-to-GCP/gcp_images/gcp_shell2.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/nih-cfde/training-and-engagement/HEAD/docs/Cloud-Platforms/Introduction-to-GCP/gcp_images/gcp_shell2.png -------------------------------------------------------------------------------- /docs/Cloud-Platforms/Introduction-to-GCP/gcp_images/gcp_storage1.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/nih-cfde/training-and-engagement/HEAD/docs/Cloud-Platforms/Introduction-to-GCP/gcp_images/gcp_storage1.png -------------------------------------------------------------------------------- /docs/Cloud-Platforms/Introduction-to-GCP/gcp_images/gcp_storage2.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/nih-cfde/training-and-engagement/HEAD/docs/Cloud-Platforms/Introduction-to-GCP/gcp_images/gcp_storage2.png -------------------------------------------------------------------------------- /docs/Cloud-Platforms/Introduction-to-GCP/gcp_images/gcp_storage3.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/nih-cfde/training-and-engagement/HEAD/docs/Cloud-Platforms/Introduction-to-GCP/gcp_images/gcp_storage3.png -------------------------------------------------------------------------------- /docs/Cloud-Platforms/Introduction-to-GCP/gcp_images/gcp_vm.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/nih-cfde/training-and-engagement/HEAD/docs/Cloud-Platforms/Introduction-to-GCP/gcp_images/gcp_vm.png -------------------------------------------------------------------------------- /docs/Cloud-Platforms/Introduction-to-GCP/gcp_images/gcp_vmGCS.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/nih-cfde/training-and-engagement/HEAD/docs/Cloud-Platforms/Introduction-to-GCP/gcp_images/gcp_vmGCS.png -------------------------------------------------------------------------------- /docs/Cloud-Platforms/Introduction-to-GCP/gcp_images/gcp_vm_runoptions.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/nih-cfde/training-and-engagement/HEAD/docs/Cloud-Platforms/Introduction-to-GCP/gcp_images/gcp_vm_runoptions.png -------------------------------------------------------------------------------- /docs/Cloud-Platforms/Introduction-to-GCP/gcp_images/gcp_vm_runoptions2.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/nih-cfde/training-and-engagement/HEAD/docs/Cloud-Platforms/Introduction-to-GCP/gcp_images/gcp_vm_runoptions2.png -------------------------------------------------------------------------------- /docs/Cloud-Platforms/Introduction-to-GCP/gcp_images/gcp_vmconfig.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/nih-cfde/training-and-engagement/HEAD/docs/Cloud-Platforms/Introduction-to-GCP/gcp_images/gcp_vmconfig.png -------------------------------------------------------------------------------- /docs/Cloud-Platforms/Introduction-to-GCP/gcp_images/gcp_vmconfig1.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/nih-cfde/training-and-engagement/HEAD/docs/Cloud-Platforms/Introduction-to-GCP/gcp_images/gcp_vmconfig1.png -------------------------------------------------------------------------------- /docs/Cloud-Platforms/Introduction-to-GCP/gcp_images/gcp_vmconfig2.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/nih-cfde/training-and-engagement/HEAD/docs/Cloud-Platforms/Introduction-to-GCP/gcp_images/gcp_vmconfig2.png -------------------------------------------------------------------------------- /docs/Cloud-Platforms/Introduction-to-GCP/gcp_images/gcp_vmconfig3.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/nih-cfde/training-and-engagement/HEAD/docs/Cloud-Platforms/Introduction-to-GCP/gcp_images/gcp_vmconfig3.png -------------------------------------------------------------------------------- /docs/Cloud-Platforms/Introduction-to-GCP/gcp_images/gcp_vmconfig4.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/nih-cfde/training-and-engagement/HEAD/docs/Cloud-Platforms/Introduction-to-GCP/gcp_images/gcp_vmconfig4.png -------------------------------------------------------------------------------- /docs/Cloud-Platforms/Introduction-to-GCP/gcp_images/gcp_vmssh.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/nih-cfde/training-and-engagement/HEAD/docs/Cloud-Platforms/Introduction-to-GCP/gcp_images/gcp_vmssh.png -------------------------------------------------------------------------------- /docs/Cloud-Platforms/Introduction-to-GCP/gcp_images/gcp_vmstop.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/nih-cfde/training-and-engagement/HEAD/docs/Cloud-Platforms/Introduction-to-GCP/gcp_images/gcp_vmstop.png -------------------------------------------------------------------------------- /docs/Cloud-Platforms/Introduction-to-GCP/gcp_images/gcp_vmterminal.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/nih-cfde/training-and-engagement/HEAD/docs/Cloud-Platforms/Introduction-to-GCP/gcp_images/gcp_vmterminal.png -------------------------------------------------------------------------------- /docs/Cloud-Platforms/Introduction-to-GCP/gcp_images/sra_config1.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/nih-cfde/training-and-engagement/HEAD/docs/Cloud-Platforms/Introduction-to-GCP/gcp_images/sra_config1.png -------------------------------------------------------------------------------- /docs/Cloud-Platforms/Introduction-to-GCP/gcp_images/sra_config2.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/nih-cfde/training-and-engagement/HEAD/docs/Cloud-Platforms/Introduction-to-GCP/gcp_images/sra_config2.png -------------------------------------------------------------------------------- /docs/Cloud-Platforms/Introduction-to-GCP/gcp_images/sra_config3.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/nih-cfde/training-and-engagement/HEAD/docs/Cloud-Platforms/Introduction-to-GCP/gcp_images/sra_config3.png -------------------------------------------------------------------------------- /docs/Cloud-Platforms/Introduction-to-GCP/gcp_images/sra_config4.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/nih-cfde/training-and-engagement/HEAD/docs/Cloud-Platforms/Introduction-to-GCP/gcp_images/sra_config4.png -------------------------------------------------------------------------------- /docs/Cloud-Platforms/Introduction-to-GCP/gcp_images/sra_example_sample.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/nih-cfde/training-and-engagement/HEAD/docs/Cloud-Platforms/Introduction-to-GCP/gcp_images/sra_example_sample.png -------------------------------------------------------------------------------- /docs/Cloud-Platforms/Introduction-to-GCP/index.md: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/nih-cfde/training-and-engagement/HEAD/docs/Cloud-Platforms/Introduction-to-GCP/index.md -------------------------------------------------------------------------------- /docs/Cloud-Platforms/Introduction-to-GCP/sratoolkit_config_steps.md: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/nih-cfde/training-and-engagement/HEAD/docs/Cloud-Platforms/Introduction-to-GCP/sratoolkit_config_steps.md -------------------------------------------------------------------------------- /docs/Cloud-Platforms/Introduction-to-GCP/testfile.txt: -------------------------------------------------------------------------------- 1 | I am a test file! 2 | -------------------------------------------------------------------------------- /docs/Cloud-Platforms/Introduction-to-Terra/.pages: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/nih-cfde/training-and-engagement/HEAD/docs/Cloud-Platforms/Introduction-to-Terra/.pages -------------------------------------------------------------------------------- /docs/Cloud-Platforms/Introduction-to-Terra/0terra.md: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/nih-cfde/training-and-engagement/HEAD/docs/Cloud-Platforms/Introduction-to-Terra/0terra.md -------------------------------------------------------------------------------- /docs/Cloud-Platforms/Introduction-to-Terra/1terra.md: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/nih-cfde/training-and-engagement/HEAD/docs/Cloud-Platforms/Introduction-to-Terra/1terra.md -------------------------------------------------------------------------------- /docs/Cloud-Platforms/Introduction-to-Terra/2terra.md: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/nih-cfde/training-and-engagement/HEAD/docs/Cloud-Platforms/Introduction-to-Terra/2terra.md -------------------------------------------------------------------------------- /docs/Cloud-Platforms/Introduction-to-Terra/3terra.md: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/nih-cfde/training-and-engagement/HEAD/docs/Cloud-Platforms/Introduction-to-Terra/3terra.md -------------------------------------------------------------------------------- /docs/Cloud-Platforms/Introduction-to-Terra/4terra.md: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/nih-cfde/training-and-engagement/HEAD/docs/Cloud-Platforms/Introduction-to-Terra/4terra.md -------------------------------------------------------------------------------- /docs/Cloud-Platforms/Introduction-to-Terra/5terra.md: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/nih-cfde/training-and-engagement/HEAD/docs/Cloud-Platforms/Introduction-to-Terra/5terra.md -------------------------------------------------------------------------------- /docs/Cloud-Platforms/Introduction-to-Terra/Dockerfile.md: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/nih-cfde/training-and-engagement/HEAD/docs/Cloud-Platforms/Introduction-to-Terra/Dockerfile.md -------------------------------------------------------------------------------- /docs/Cloud-Platforms/Introduction-to-Terra/GWAS_WDL.md: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/nih-cfde/training-and-engagement/HEAD/docs/Cloud-Platforms/Introduction-to-Terra/GWAS_WDL.md -------------------------------------------------------------------------------- /docs/Cloud-Platforms/Introduction-to-Terra/GWAS_json.md: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/nih-cfde/training-and-engagement/HEAD/docs/Cloud-Platforms/Introduction-to-Terra/GWAS_json.md -------------------------------------------------------------------------------- /docs/Cloud-Platforms/Introduction-to-Terra/index.md: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/nih-cfde/training-and-engagement/HEAD/docs/Cloud-Platforms/Introduction-to-Terra/index.md -------------------------------------------------------------------------------- /docs/Cloud-Platforms/Introduction-to-Terra/terra-imgs/gcp-billing-tabs.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/nih-cfde/training-and-engagement/HEAD/docs/Cloud-Platforms/Introduction-to-Terra/terra-imgs/gcp-billing-tabs.png -------------------------------------------------------------------------------- /docs/Cloud-Platforms/Introduction-to-Terra/terra-imgs/gcp-billing.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/nih-cfde/training-and-engagement/HEAD/docs/Cloud-Platforms/Introduction-to-Terra/terra-imgs/gcp-billing.png -------------------------------------------------------------------------------- /docs/Cloud-Platforms/Introduction-to-Terra/terra-imgs/gcp-linkterra1.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/nih-cfde/training-and-engagement/HEAD/docs/Cloud-Platforms/Introduction-to-Terra/terra-imgs/gcp-linkterra1.png -------------------------------------------------------------------------------- /docs/Cloud-Platforms/Introduction-to-Terra/terra-imgs/gcp-linkterra2.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/nih-cfde/training-and-engagement/HEAD/docs/Cloud-Platforms/Introduction-to-Terra/terra-imgs/gcp-linkterra2.png -------------------------------------------------------------------------------- /docs/Cloud-Platforms/Introduction-to-Terra/terra-imgs/gcp-linkterra3.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/nih-cfde/training-and-engagement/HEAD/docs/Cloud-Platforms/Introduction-to-Terra/terra-imgs/gcp-linkterra3.png -------------------------------------------------------------------------------- /docs/Cloud-Platforms/Introduction-to-Terra/terra-imgs/osf-download.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/nih-cfde/training-and-engagement/HEAD/docs/Cloud-Platforms/Introduction-to-Terra/terra-imgs/osf-download.png -------------------------------------------------------------------------------- /docs/Cloud-Platforms/Introduction-to-Terra/terra-imgs/osf-files.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/nih-cfde/training-and-engagement/HEAD/docs/Cloud-Platforms/Introduction-to-Terra/terra-imgs/osf-files.png -------------------------------------------------------------------------------- /docs/Cloud-Platforms/Introduction-to-Terra/terra-imgs/terra-add-files.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/nih-cfde/training-and-engagement/HEAD/docs/Cloud-Platforms/Introduction-to-Terra/terra-imgs/terra-add-files.png -------------------------------------------------------------------------------- /docs/Cloud-Platforms/Introduction-to-Terra/terra-imgs/terra-billing-option.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/nih-cfde/training-and-engagement/HEAD/docs/Cloud-Platforms/Introduction-to-Terra/terra-imgs/terra-billing-option.png -------------------------------------------------------------------------------- /docs/Cloud-Platforms/Introduction-to-Terra/terra-imgs/terra-billing-project.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/nih-cfde/training-and-engagement/HEAD/docs/Cloud-Platforms/Introduction-to-Terra/terra-imgs/terra-billing-project.png -------------------------------------------------------------------------------- /docs/Cloud-Platforms/Introduction-to-Terra/terra-imgs/terra-home-pg.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/nih-cfde/training-and-engagement/HEAD/docs/Cloud-Platforms/Introduction-to-Terra/terra-imgs/terra-home-pg.png -------------------------------------------------------------------------------- /docs/Cloud-Platforms/Introduction-to-Terra/terra-imgs/terra-workspace-clone.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/nih-cfde/training-and-engagement/HEAD/docs/Cloud-Platforms/Introduction-to-Terra/terra-imgs/terra-workspace-clone.png -------------------------------------------------------------------------------- /docs/Cloud-Platforms/Introduction-to-Terra/terra-imgs/terra-workspace-clone2.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/nih-cfde/training-and-engagement/HEAD/docs/Cloud-Platforms/Introduction-to-Terra/terra-imgs/terra-workspace-clone2.png -------------------------------------------------------------------------------- /docs/Cloud-Platforms/Introduction-to-Terra/terra-imgs/terra-workspace-clone3.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/nih-cfde/training-and-engagement/HEAD/docs/Cloud-Platforms/Introduction-to-Terra/terra-imgs/terra-workspace-clone3.png -------------------------------------------------------------------------------- /docs/Cloud-Platforms/Introduction-to-Terra/terra-imgs/terra-workspace-delete.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/nih-cfde/training-and-engagement/HEAD/docs/Cloud-Platforms/Introduction-to-Terra/terra-imgs/terra-workspace-delete.png -------------------------------------------------------------------------------- /docs/Cloud-Platforms/Introduction-to-Terra/terra-imgs/terra-workspace-delete2.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/nih-cfde/training-and-engagement/HEAD/docs/Cloud-Platforms/Introduction-to-Terra/terra-imgs/terra-workspace-delete2.png -------------------------------------------------------------------------------- /docs/Cloud-Platforms/Introduction-to-Terra/terra-imgs/terra-workspace-share1.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/nih-cfde/training-and-engagement/HEAD/docs/Cloud-Platforms/Introduction-to-Terra/terra-imgs/terra-workspace-share1.png -------------------------------------------------------------------------------- /docs/Cloud-Platforms/Introduction-to-Terra/terra-imgs/terra-workspace-share2.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/nih-cfde/training-and-engagement/HEAD/docs/Cloud-Platforms/Introduction-to-Terra/terra-imgs/terra-workspace-share2.png -------------------------------------------------------------------------------- /docs/Cloud-Platforms/Introduction-to-Terra/terra-imgs/terra-workspace1.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/nih-cfde/training-and-engagement/HEAD/docs/Cloud-Platforms/Introduction-to-Terra/terra-imgs/terra-workspace1.png -------------------------------------------------------------------------------- /docs/Cloud-Platforms/Introduction-to-Terra/terra-imgs/terra-workspace2.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/nih-cfde/training-and-engagement/HEAD/docs/Cloud-Platforms/Introduction-to-Terra/terra-imgs/terra-workspace2.png -------------------------------------------------------------------------------- /docs/Cloud-Platforms/Introduction-to-Terra/terra-imgs/terra-workspace3.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/nih-cfde/training-and-engagement/HEAD/docs/Cloud-Platforms/Introduction-to-Terra/terra-imgs/terra-workspace3.png -------------------------------------------------------------------------------- /docs/Cloud-Platforms/Introduction-to-Terra/terra-imgs/terra-workspace4.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/nih-cfde/training-and-engagement/HEAD/docs/Cloud-Platforms/Introduction-to-Terra/terra-imgs/terra-workspace4.png -------------------------------------------------------------------------------- /docs/Cloud-Platforms/Introduction-to-Terra/terra_sample_tsv.tsv: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/nih-cfde/training-and-engagement/HEAD/docs/Cloud-Platforms/Introduction-to-Terra/terra_sample_tsv.tsv -------------------------------------------------------------------------------- /docs/Cloud-Platforms/index.md: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/nih-cfde/training-and-engagement/HEAD/docs/Cloud-Platforms/index.md -------------------------------------------------------------------------------- /docs/Common-Fund-Tools/.pages: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/nih-cfde/training-and-engagement/HEAD/docs/Common-Fund-Tools/.pages -------------------------------------------------------------------------------- /docs/Common-Fund-Tools/CFDE-Portal/.pages: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/nih-cfde/training-and-engagement/HEAD/docs/Common-Fund-Tools/CFDE-Portal/.pages -------------------------------------------------------------------------------- /docs/Common-Fund-Tools/CFDE-Portal/Blood-Cancer/.pages: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/nih-cfde/training-and-engagement/HEAD/docs/Common-Fund-Tools/CFDE-Portal/Blood-Cancer/.pages -------------------------------------------------------------------------------- /docs/Common-Fund-Tools/CFDE-Portal/Blood-Cancer/blood-cancer-data-access.md: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/nih-cfde/training-and-engagement/HEAD/docs/Common-Fund-Tools/CFDE-Portal/Blood-Cancer/blood-cancer-data-access.md -------------------------------------------------------------------------------- /docs/Common-Fund-Tools/CFDE-Portal/Blood-Cancer/blood-cancer-portal-export.md: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/nih-cfde/training-and-engagement/HEAD/docs/Common-Fund-Tools/CFDE-Portal/Blood-Cancer/blood-cancer-portal-export.md -------------------------------------------------------------------------------- /docs/Common-Fund-Tools/CFDE-Portal/Movement-Related-Disorders/.pages: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/nih-cfde/training-and-engagement/HEAD/docs/Common-Fund-Tools/CFDE-Portal/Movement-Related-Disorders/.pages -------------------------------------------------------------------------------- /docs/Common-Fund-Tools/CFDE-Portal/Movement-Related-Disorders/movement-disorders-data-access.md: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/nih-cfde/training-and-engagement/HEAD/docs/Common-Fund-Tools/CFDE-Portal/Movement-Related-Disorders/movement-disorders-data-access.md -------------------------------------------------------------------------------- /docs/Common-Fund-Tools/CFDE-Portal/Movement-Related-Disorders/movement-disorders-portal-export.md: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/nih-cfde/training-and-engagement/HEAD/docs/Common-Fund-Tools/CFDE-Portal/Movement-Related-Disorders/movement-disorders-portal-export.md -------------------------------------------------------------------------------- /docs/Common-Fund-Tools/CFDE-Portal/iHMP/.pages: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/nih-cfde/training-and-engagement/HEAD/docs/Common-Fund-Tools/CFDE-Portal/iHMP/.pages -------------------------------------------------------------------------------- /docs/Common-Fund-Tools/CFDE-Portal/iHMP/CAVATICA-create.md: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/nih-cfde/training-and-engagement/HEAD/docs/Common-Fund-Tools/CFDE-Portal/iHMP/CAVATICA-create.md -------------------------------------------------------------------------------- /docs/Common-Fund-Tools/CFDE-Portal/iHMP/CAVATICA-drs.md: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/nih-cfde/training-and-engagement/HEAD/docs/Common-Fund-Tools/CFDE-Portal/iHMP/CAVATICA-drs.md -------------------------------------------------------------------------------- /docs/Common-Fund-Tools/CFDE-Portal/iHMP/find-export.md: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/nih-cfde/training-and-engagement/HEAD/docs/Common-Fund-Tools/CFDE-Portal/iHMP/find-export.md -------------------------------------------------------------------------------- /docs/Common-Fund-Tools/CFDE-Portal/iHMP/jupyterhub.md: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/nih-cfde/training-and-engagement/HEAD/docs/Common-Fund-Tools/CFDE-Portal/iHMP/jupyterhub.md -------------------------------------------------------------------------------- /docs/Common-Fund-Tools/CFDE-Portal/images/AML-anatomy-filter.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/nih-cfde/training-and-engagement/HEAD/docs/Common-Fund-Tools/CFDE-Portal/images/AML-anatomy-filter.png -------------------------------------------------------------------------------- /docs/Common-Fund-Tools/CFDE-Portal/images/AML-assay-anatomy.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/nih-cfde/training-and-engagement/HEAD/docs/Common-Fund-Tools/CFDE-Portal/images/AML-assay-anatomy.png -------------------------------------------------------------------------------- /docs/Common-Fund-Tools/CFDE-Portal/images/AML-blood-filter.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/nih-cfde/training-and-engagement/HEAD/docs/Common-Fund-Tools/CFDE-Portal/images/AML-blood-filter.png -------------------------------------------------------------------------------- /docs/Common-Fund-Tools/CFDE-Portal/images/AML-blood-subset.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/nih-cfde/training-and-engagement/HEAD/docs/Common-Fund-Tools/CFDE-Portal/images/AML-blood-subset.png -------------------------------------------------------------------------------- /docs/Common-Fund-Tools/CFDE-Portal/images/AML-cohort-export.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/nih-cfde/training-and-engagement/HEAD/docs/Common-Fund-Tools/CFDE-Portal/images/AML-cohort-export.png -------------------------------------------------------------------------------- /docs/Common-Fund-Tools/CFDE-Portal/images/AML-final-cohort.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/nih-cfde/training-and-engagement/HEAD/docs/Common-Fund-Tools/CFDE-Portal/images/AML-final-cohort.png -------------------------------------------------------------------------------- /docs/Common-Fund-Tools/CFDE-Portal/images/CFDE-portal-biosample.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/nih-cfde/training-and-engagement/HEAD/docs/Common-Fund-Tools/CFDE-Portal/images/CFDE-portal-biosample.png -------------------------------------------------------------------------------- /docs/Common-Fund-Tools/CFDE-Portal/images/CFDE-portal-blood-cancer-export.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/nih-cfde/training-and-engagement/HEAD/docs/Common-Fund-Tools/CFDE-Portal/images/CFDE-portal-blood-cancer-export.png -------------------------------------------------------------------------------- /docs/Common-Fund-Tools/CFDE-Portal/images/CFDE-portal-collection.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/nih-cfde/training-and-engagement/HEAD/docs/Common-Fund-Tools/CFDE-Portal/images/CFDE-portal-collection.png -------------------------------------------------------------------------------- /docs/Common-Fund-Tools/CFDE-Portal/images/CFDE-portal-movement-disorder-export.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/nih-cfde/training-and-engagement/HEAD/docs/Common-Fund-Tools/CFDE-Portal/images/CFDE-portal-movement-disorder-export.png -------------------------------------------------------------------------------- /docs/Common-Fund-Tools/CFDE-Portal/images/GTEx-data-annotations.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/nih-cfde/training-and-engagement/HEAD/docs/Common-Fund-Tools/CFDE-Portal/images/GTEx-data-annotations.png -------------------------------------------------------------------------------- /docs/Common-Fund-Tools/CFDE-Portal/images/GTEx-data-download.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/nih-cfde/training-and-engagement/HEAD/docs/Common-Fund-Tools/CFDE-Portal/images/GTEx-data-download.png -------------------------------------------------------------------------------- /docs/Common-Fund-Tools/CFDE-Portal/images/GTEx-login-page.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/nih-cfde/training-and-engagement/HEAD/docs/Common-Fund-Tools/CFDE-Portal/images/GTEx-login-page.png -------------------------------------------------------------------------------- /docs/Common-Fund-Tools/CFDE-Portal/images/GTEx-sample-annotations.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/nih-cfde/training-and-engagement/HEAD/docs/Common-Fund-Tools/CFDE-Portal/images/GTEx-sample-annotations.png -------------------------------------------------------------------------------- /docs/Common-Fund-Tools/CFDE-Portal/images/GTEx-subject-annotations.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/nih-cfde/training-and-engagement/HEAD/docs/Common-Fund-Tools/CFDE-Portal/images/GTEx-subject-annotations.png -------------------------------------------------------------------------------- /docs/Common-Fund-Tools/CFDE-Portal/images/KF-data-access.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/nih-cfde/training-and-engagement/HEAD/docs/Common-Fund-Tools/CFDE-Portal/images/KF-data-access.png -------------------------------------------------------------------------------- /docs/Common-Fund-Tools/CFDE-Portal/images/KF-select-biospecimen-id.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/nih-cfde/training-and-engagement/HEAD/docs/Common-Fund-Tools/CFDE-Portal/images/KF-select-biospecimen-id.png -------------------------------------------------------------------------------- /docs/Common-Fund-Tools/CFDE-Portal/images/KF-subset-list.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/nih-cfde/training-and-engagement/HEAD/docs/Common-Fund-Tools/CFDE-Portal/images/KF-subset-list.png -------------------------------------------------------------------------------- /docs/Common-Fund-Tools/CFDE-Portal/images/KF-upload-ids.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/nih-cfde/training-and-engagement/HEAD/docs/Common-Fund-Tools/CFDE-Portal/images/KF-upload-ids.png -------------------------------------------------------------------------------- /docs/Common-Fund-Tools/CFDE-Portal/images/LINCS-data-portal.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/nih-cfde/training-and-engagement/HEAD/docs/Common-Fund-Tools/CFDE-Portal/images/LINCS-data-portal.png -------------------------------------------------------------------------------- /docs/Common-Fund-Tools/CFDE-Portal/images/LINCS_dbGaP-data-source.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/nih-cfde/training-and-engagement/HEAD/docs/Common-Fund-Tools/CFDE-Portal/images/LINCS_dbGaP-data-source.png -------------------------------------------------------------------------------- /docs/Common-Fund-Tools/CFDE-Portal/images/Metabolomics-download-data.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/nih-cfde/training-and-engagement/HEAD/docs/Common-Fund-Tools/CFDE-Portal/images/Metabolomics-download-data.png -------------------------------------------------------------------------------- /docs/Common-Fund-Tools/CFDE-Portal/images/Metabolomics-statistical-test.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/nih-cfde/training-and-engagement/HEAD/docs/Common-Fund-Tools/CFDE-Portal/images/Metabolomics-statistical-test.png -------------------------------------------------------------------------------- /docs/Common-Fund-Tools/CFDE-Portal/images/Metabolomics-workbench-summary.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/nih-cfde/training-and-engagement/HEAD/docs/Common-Fund-Tools/CFDE-Portal/images/Metabolomics-workbench-summary.png -------------------------------------------------------------------------------- /docs/Common-Fund-Tools/CFDE-Portal/images/Neurodegeneration-ipsc-filter.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/nih-cfde/training-and-engagement/HEAD/docs/Common-Fund-Tools/CFDE-Portal/images/Neurodegeneration-ipsc-filter.png -------------------------------------------------------------------------------- /docs/Common-Fund-Tools/CFDE-Portal/images/Neurodegeneration-part-of-collection-ipsc.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/nih-cfde/training-and-engagement/HEAD/docs/Common-Fund-Tools/CFDE-Portal/images/Neurodegeneration-part-of-collection-ipsc.png -------------------------------------------------------------------------------- /docs/Common-Fund-Tools/CFDE-Portal/images/Neurodegeneration-stem-cell.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/nih-cfde/training-and-engagement/HEAD/docs/Common-Fund-Tools/CFDE-Portal/images/Neurodegeneration-stem-cell.png -------------------------------------------------------------------------------- /docs/Common-Fund-Tools/CFDE-Portal/index.md: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/nih-cfde/training-and-engagement/HEAD/docs/Common-Fund-Tools/CFDE-Portal/index.md -------------------------------------------------------------------------------- /docs/Common-Fund-Tools/IDG.md: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/nih-cfde/training-and-engagement/HEAD/docs/Common-Fund-Tools/IDG.md -------------------------------------------------------------------------------- /docs/Common-Fund-Tools/Kids-First/.pages: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/nih-cfde/training-and-engagement/HEAD/docs/Common-Fund-Tools/Kids-First/.pages -------------------------------------------------------------------------------- /docs/Common-Fund-Tools/Kids-First/Advanced-KF-Portal-Queries/.pages: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/nih-cfde/training-and-engagement/HEAD/docs/Common-Fund-Tools/Kids-First/Advanced-KF-Portal-Queries/.pages -------------------------------------------------------------------------------- /docs/Common-Fund-Tools/Kids-First/Advanced-KF-Portal-Queries/KF_10_AndOr.md: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/nih-cfde/training-and-engagement/HEAD/docs/Common-Fund-Tools/Kids-First/Advanced-KF-Portal-Queries/KF_10_AndOr.md -------------------------------------------------------------------------------- /docs/Common-Fund-Tools/Kids-First/Advanced-KF-Portal-Queries/KF_11_JointQuery.md: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/nih-cfde/training-and-engagement/HEAD/docs/Common-Fund-Tools/Kids-First/Advanced-KF-Portal-Queries/KF_11_JointQuery.md -------------------------------------------------------------------------------- /docs/Common-Fund-Tools/Kids-First/Advanced-KF-Portal-Queries/KF_12_CheckingQueries.md: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/nih-cfde/training-and-engagement/HEAD/docs/Common-Fund-Tools/Kids-First/Advanced-KF-Portal-Queries/KF_12_CheckingQueries.md -------------------------------------------------------------------------------- /docs/Common-Fund-Tools/Kids-First/Advanced-KF-Portal-Queries/KF_13_SavingQueries.md: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/nih-cfde/training-and-engagement/HEAD/docs/Common-Fund-Tools/Kids-First/Advanced-KF-Portal-Queries/KF_13_SavingQueries.md -------------------------------------------------------------------------------- /docs/Common-Fund-Tools/Kids-First/Advanced-KF-Portal-Queries/KF_9_AdvancedQuery.md: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/nih-cfde/training-and-engagement/HEAD/docs/Common-Fund-Tools/Kids-First/Advanced-KF-Portal-Queries/KF_9_AdvancedQuery.md -------------------------------------------------------------------------------- /docs/Common-Fund-Tools/Kids-First/Download_Data/.pages: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/nih-cfde/training-and-engagement/HEAD/docs/Common-Fund-Tools/Kids-First/Download_Data/.pages -------------------------------------------------------------------------------- /docs/Common-Fund-Tools/Kids-First/Download_Data/Data-Download-Via-Cavatica.md: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/nih-cfde/training-and-engagement/HEAD/docs/Common-Fund-Tools/Kids-First/Download_Data/Data-Download-Via-Cavatica.md -------------------------------------------------------------------------------- /docs/Common-Fund-Tools/Kids-First/Download_Data/Data-Download-Via-KF-Portal.md: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/nih-cfde/training-and-engagement/HEAD/docs/Common-Fund-Tools/Kids-First/Download_Data/Data-Download-Via-KF-Portal.md -------------------------------------------------------------------------------- /docs/Common-Fund-Tools/Kids-First/Download_Data/index.md: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/nih-cfde/training-and-engagement/HEAD/docs/Common-Fund-Tools/Kids-First/Download_Data/index.md -------------------------------------------------------------------------------- /docs/Common-Fund-Tools/Kids-First/Download_Data/vidlets/1_screencast.cast: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/nih-cfde/training-and-engagement/HEAD/docs/Common-Fund-Tools/Kids-First/Download_Data/vidlets/1_screencast.cast -------------------------------------------------------------------------------- /docs/Common-Fund-Tools/Kids-First/Download_Data/vidlets/2_screencast.cast: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/nih-cfde/training-and-engagement/HEAD/docs/Common-Fund-Tools/Kids-First/Download_Data/vidlets/2_screencast.cast -------------------------------------------------------------------------------- /docs/Common-Fund-Tools/Kids-First/Exploring-Data-in-the-KF-Portal/.pages: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/nih-cfde/training-and-engagement/HEAD/docs/Common-Fund-Tools/Kids-First/Exploring-Data-in-the-KF-Portal/.pages -------------------------------------------------------------------------------- /docs/Common-Fund-Tools/Kids-First/Exploring-Data-in-the-KF-Portal/KF_5_Explore.md: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/nih-cfde/training-and-engagement/HEAD/docs/Common-Fund-Tools/Kids-First/Exploring-Data-in-the-KF-Portal/KF_5_Explore.md -------------------------------------------------------------------------------- /docs/Common-Fund-Tools/Kids-First/Exploring-Data-in-the-KF-Portal/KF_6_Filtering.md: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/nih-cfde/training-and-engagement/HEAD/docs/Common-Fund-Tools/Kids-First/Exploring-Data-in-the-KF-Portal/KF_6_Filtering.md -------------------------------------------------------------------------------- /docs/Common-Fund-Tools/Kids-First/Exploring-Data-in-the-KF-Portal/KF_7_Plots.md: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/nih-cfde/training-and-engagement/HEAD/docs/Common-Fund-Tools/Kids-First/Exploring-Data-in-the-KF-Portal/KF_7_Plots.md -------------------------------------------------------------------------------- /docs/Common-Fund-Tools/Kids-First/Exploring-Data-in-the-KF-Portal/KF_8_Resetting.md: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/nih-cfde/training-and-engagement/HEAD/docs/Common-Fund-Tools/Kids-First/Exploring-Data-in-the-KF-Portal/KF_8_Resetting.md -------------------------------------------------------------------------------- /docs/Common-Fund-Tools/Kids-First/KF_7_PushToCavatica.md: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/nih-cfde/training-and-engagement/HEAD/docs/Common-Fund-Tools/Kids-First/KF_7_PushToCavatica.md -------------------------------------------------------------------------------- /docs/Common-Fund-Tools/Kids-First/Portal-Setup-And-Permissions/.pages: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/nih-cfde/training-and-engagement/HEAD/docs/Common-Fund-Tools/Kids-First/Portal-Setup-And-Permissions/.pages -------------------------------------------------------------------------------- /docs/Common-Fund-Tools/Kids-First/Portal-Setup-And-Permissions/KF_2_The_Setup.md: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/nih-cfde/training-and-engagement/HEAD/docs/Common-Fund-Tools/Kids-First/Portal-Setup-And-Permissions/KF_2_The_Setup.md -------------------------------------------------------------------------------- /docs/Common-Fund-Tools/Kids-First/Portal-Setup-And-Permissions/KF_3_KF_Registration.md: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/nih-cfde/training-and-engagement/HEAD/docs/Common-Fund-Tools/Kids-First/Portal-Setup-And-Permissions/KF_3_KF_Registration.md -------------------------------------------------------------------------------- /docs/Common-Fund-Tools/Kids-First/Portal-Setup-And-Permissions/KF_4_Cavatica_Registration.md: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/nih-cfde/training-and-engagement/HEAD/docs/Common-Fund-Tools/Kids-First/Portal-Setup-And-Permissions/KF_4_Cavatica_Registration.md -------------------------------------------------------------------------------- /docs/Common-Fund-Tools/Kids-First/Portal-Setup-And-Permissions/KF_5_ConnectingAccounts.md: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/nih-cfde/training-and-engagement/HEAD/docs/Common-Fund-Tools/Kids-First/Portal-Setup-And-Permissions/KF_5_ConnectingAccounts.md -------------------------------------------------------------------------------- /docs/Common-Fund-Tools/Kids-First/Portal-Setup-And-Permissions/KF_6_AccessingData.md: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/nih-cfde/training-and-engagement/HEAD/docs/Common-Fund-Tools/Kids-First/Portal-Setup-And-Permissions/KF_6_AccessingData.md -------------------------------------------------------------------------------- /docs/Common-Fund-Tools/Kids-First/Upload_Data.md: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/nih-cfde/training-and-engagement/HEAD/docs/Common-Fund-Tools/Kids-First/Upload_Data.md -------------------------------------------------------------------------------- /docs/Common-Fund-Tools/Kids-First/images-kf/CGC_1.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/nih-cfde/training-and-engagement/HEAD/docs/Common-Fund-Tools/Kids-First/images-kf/CGC_1.png -------------------------------------------------------------------------------- /docs/Common-Fund-Tools/Kids-First/images-kf/CGC_2.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/nih-cfde/training-and-engagement/HEAD/docs/Common-Fund-Tools/Kids-First/images-kf/CGC_2.png -------------------------------------------------------------------------------- /docs/Common-Fund-Tools/Kids-First/images-kf/CGC_3.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/nih-cfde/training-and-engagement/HEAD/docs/Common-Fund-Tools/Kids-First/images-kf/CGC_3.png -------------------------------------------------------------------------------- /docs/Common-Fund-Tools/Kids-First/images-kf/CGC_4.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/nih-cfde/training-and-engagement/HEAD/docs/Common-Fund-Tools/Kids-First/images-kf/CGC_4.png -------------------------------------------------------------------------------- /docs/Common-Fund-Tools/Kids-First/images-kf/CGC_5.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/nih-cfde/training-and-engagement/HEAD/docs/Common-Fund-Tools/Kids-First/images-kf/CGC_5.png -------------------------------------------------------------------------------- /docs/Common-Fund-Tools/Kids-First/images-kf/CGC_6.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/nih-cfde/training-and-engagement/HEAD/docs/Common-Fund-Tools/Kids-First/images-kf/CGC_6.png -------------------------------------------------------------------------------- /docs/Common-Fund-Tools/Kids-First/images-kf/Cavatica_1.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/nih-cfde/training-and-engagement/HEAD/docs/Common-Fund-Tools/Kids-First/images-kf/Cavatica_1.png -------------------------------------------------------------------------------- /docs/Common-Fund-Tools/Kids-First/images-kf/Cavatica_10.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/nih-cfde/training-and-engagement/HEAD/docs/Common-Fund-Tools/Kids-First/images-kf/Cavatica_10.png -------------------------------------------------------------------------------- /docs/Common-Fund-Tools/Kids-First/images-kf/Cavatica_11.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/nih-cfde/training-and-engagement/HEAD/docs/Common-Fund-Tools/Kids-First/images-kf/Cavatica_11.png -------------------------------------------------------------------------------- /docs/Common-Fund-Tools/Kids-First/images-kf/Cavatica_2.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/nih-cfde/training-and-engagement/HEAD/docs/Common-Fund-Tools/Kids-First/images-kf/Cavatica_2.png -------------------------------------------------------------------------------- /docs/Common-Fund-Tools/Kids-First/images-kf/Cavatica_3.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/nih-cfde/training-and-engagement/HEAD/docs/Common-Fund-Tools/Kids-First/images-kf/Cavatica_3.png -------------------------------------------------------------------------------- /docs/Common-Fund-Tools/Kids-First/images-kf/Cavatica_4.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/nih-cfde/training-and-engagement/HEAD/docs/Common-Fund-Tools/Kids-First/images-kf/Cavatica_4.png -------------------------------------------------------------------------------- /docs/Common-Fund-Tools/Kids-First/images-kf/Cavatica_5.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/nih-cfde/training-and-engagement/HEAD/docs/Common-Fund-Tools/Kids-First/images-kf/Cavatica_5.png -------------------------------------------------------------------------------- /docs/Common-Fund-Tools/Kids-First/images-kf/Cavatica_6.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/nih-cfde/training-and-engagement/HEAD/docs/Common-Fund-Tools/Kids-First/images-kf/Cavatica_6.png -------------------------------------------------------------------------------- /docs/Common-Fund-Tools/Kids-First/images-kf/Cavatica_7.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/nih-cfde/training-and-engagement/HEAD/docs/Common-Fund-Tools/Kids-First/images-kf/Cavatica_7.png -------------------------------------------------------------------------------- /docs/Common-Fund-Tools/Kids-First/images-kf/Cavatica_8.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/nih-cfde/training-and-engagement/HEAD/docs/Common-Fund-Tools/Kids-First/images-kf/Cavatica_8.png -------------------------------------------------------------------------------- /docs/Common-Fund-Tools/Kids-First/images-kf/Cavatica_9.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/nih-cfde/training-and-engagement/HEAD/docs/Common-Fund-Tools/Kids-First/images-kf/Cavatica_9.png -------------------------------------------------------------------------------- /docs/Common-Fund-Tools/Kids-First/images-kf/Clinical_Filters_11.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/nih-cfde/training-and-engagement/HEAD/docs/Common-Fund-Tools/Kids-First/images-kf/Clinical_Filters_11.png -------------------------------------------------------------------------------- /docs/Common-Fund-Tools/Kids-First/images-kf/Data_Download_Cavatica_Download_Links.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/nih-cfde/training-and-engagement/HEAD/docs/Common-Fund-Tools/Kids-First/images-kf/Data_Download_Cavatica_Download_Links.png -------------------------------------------------------------------------------- /docs/Common-Fund-Tools/Kids-First/images-kf/Data_Download_Cavatica_Download_Links_2.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/nih-cfde/training-and-engagement/HEAD/docs/Common-Fund-Tools/Kids-First/images-kf/Data_Download_Cavatica_Download_Links_2.png -------------------------------------------------------------------------------- /docs/Common-Fund-Tools/Kids-First/images-kf/Data_Download_File_download_one_by_one.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/nih-cfde/training-and-engagement/HEAD/docs/Common-Fund-Tools/Kids-First/images-kf/Data_Download_File_download_one_by_one.png -------------------------------------------------------------------------------- /docs/Common-Fund-Tools/Kids-First/images-kf/Data_Download_selecting_files_cavatica.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/nih-cfde/training-and-engagement/HEAD/docs/Common-Fund-Tools/Kids-First/images-kf/Data_Download_selecting_files_cavatica.png -------------------------------------------------------------------------------- /docs/Common-Fund-Tools/Kids-First/images-kf/File_Filters_12.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/nih-cfde/training-and-engagement/HEAD/docs/Common-Fund-Tools/Kids-First/images-kf/File_Filters_12.png -------------------------------------------------------------------------------- /docs/Common-Fund-Tools/Kids-First/images-kf/KF_saveset1.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/nih-cfde/training-and-engagement/HEAD/docs/Common-Fund-Tools/Kids-First/images-kf/KF_saveset1.png -------------------------------------------------------------------------------- /docs/Common-Fund-Tools/Kids-First/images-kf/KF_saveset2.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/nih-cfde/training-and-engagement/HEAD/docs/Common-Fund-Tools/Kids-First/images-kf/KF_saveset2.png -------------------------------------------------------------------------------- /docs/Common-Fund-Tools/Kids-First/images-kf/KF_saveset3.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/nih-cfde/training-and-engagement/HEAD/docs/Common-Fund-Tools/Kids-First/images-kf/KF_saveset3.png -------------------------------------------------------------------------------- /docs/Common-Fund-Tools/Kids-First/images-kf/KF_saveset4.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/nih-cfde/training-and-engagement/HEAD/docs/Common-Fund-Tools/Kids-First/images-kf/KF_saveset4.png -------------------------------------------------------------------------------- /docs/Common-Fund-Tools/Kids-First/images-kf/KF_saveset5.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/nih-cfde/training-and-engagement/HEAD/docs/Common-Fund-Tools/Kids-First/images-kf/KF_saveset5.png -------------------------------------------------------------------------------- /docs/Common-Fund-Tools/Kids-First/images-kf/KF_savevirtualstudy1.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/nih-cfde/training-and-engagement/HEAD/docs/Common-Fund-Tools/Kids-First/images-kf/KF_savevirtualstudy1.png -------------------------------------------------------------------------------- /docs/Common-Fund-Tools/Kids-First/images-kf/KF_savevirtualstudy2.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/nih-cfde/training-and-engagement/HEAD/docs/Common-Fund-Tools/Kids-First/images-kf/KF_savevirtualstudy2.png -------------------------------------------------------------------------------- /docs/Common-Fund-Tools/Kids-First/images-kf/KF_savevirtualstudy3.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/nih-cfde/training-and-engagement/HEAD/docs/Common-Fund-Tools/Kids-First/images-kf/KF_savevirtualstudy3.png -------------------------------------------------------------------------------- /docs/Common-Fund-Tools/Kids-First/images-kf/KF_savevirtualstudy4.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/nih-cfde/training-and-engagement/HEAD/docs/Common-Fund-Tools/Kids-First/images-kf/KF_savevirtualstudy4.png -------------------------------------------------------------------------------- /docs/Common-Fund-Tools/Kids-First/images-kf/KidsFirstPortal_1.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/nih-cfde/training-and-engagement/HEAD/docs/Common-Fund-Tools/Kids-First/images-kf/KidsFirstPortal_1.png -------------------------------------------------------------------------------- /docs/Common-Fund-Tools/Kids-First/images-kf/KidsFirstPortal_10.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/nih-cfde/training-and-engagement/HEAD/docs/Common-Fund-Tools/Kids-First/images-kf/KidsFirstPortal_10.png -------------------------------------------------------------------------------- /docs/Common-Fund-Tools/Kids-First/images-kf/KidsFirstPortal_11.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/nih-cfde/training-and-engagement/HEAD/docs/Common-Fund-Tools/Kids-First/images-kf/KidsFirstPortal_11.png -------------------------------------------------------------------------------- /docs/Common-Fund-Tools/Kids-First/images-kf/KidsFirstPortal_12.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/nih-cfde/training-and-engagement/HEAD/docs/Common-Fund-Tools/Kids-First/images-kf/KidsFirstPortal_12.png -------------------------------------------------------------------------------- /docs/Common-Fund-Tools/Kids-First/images-kf/KidsFirstPortal_13.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/nih-cfde/training-and-engagement/HEAD/docs/Common-Fund-Tools/Kids-First/images-kf/KidsFirstPortal_13.png -------------------------------------------------------------------------------- /docs/Common-Fund-Tools/Kids-First/images-kf/KidsFirstPortal_14.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/nih-cfde/training-and-engagement/HEAD/docs/Common-Fund-Tools/Kids-First/images-kf/KidsFirstPortal_14.png -------------------------------------------------------------------------------- /docs/Common-Fund-Tools/Kids-First/images-kf/KidsFirstPortal_15.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/nih-cfde/training-and-engagement/HEAD/docs/Common-Fund-Tools/Kids-First/images-kf/KidsFirstPortal_15.png -------------------------------------------------------------------------------- /docs/Common-Fund-Tools/Kids-First/images-kf/KidsFirstPortal_16.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/nih-cfde/training-and-engagement/HEAD/docs/Common-Fund-Tools/Kids-First/images-kf/KidsFirstPortal_16.png -------------------------------------------------------------------------------- /docs/Common-Fund-Tools/Kids-First/images-kf/KidsFirstPortal_17.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/nih-cfde/training-and-engagement/HEAD/docs/Common-Fund-Tools/Kids-First/images-kf/KidsFirstPortal_17.png -------------------------------------------------------------------------------- /docs/Common-Fund-Tools/Kids-First/images-kf/KidsFirstPortal_18.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/nih-cfde/training-and-engagement/HEAD/docs/Common-Fund-Tools/Kids-First/images-kf/KidsFirstPortal_18.png -------------------------------------------------------------------------------- /docs/Common-Fund-Tools/Kids-First/images-kf/KidsFirstPortal_19.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/nih-cfde/training-and-engagement/HEAD/docs/Common-Fund-Tools/Kids-First/images-kf/KidsFirstPortal_19.png -------------------------------------------------------------------------------- /docs/Common-Fund-Tools/Kids-First/images-kf/KidsFirstPortal_2.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/nih-cfde/training-and-engagement/HEAD/docs/Common-Fund-Tools/Kids-First/images-kf/KidsFirstPortal_2.png -------------------------------------------------------------------------------- /docs/Common-Fund-Tools/Kids-First/images-kf/KidsFirstPortal_20.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/nih-cfde/training-and-engagement/HEAD/docs/Common-Fund-Tools/Kids-First/images-kf/KidsFirstPortal_20.png -------------------------------------------------------------------------------- /docs/Common-Fund-Tools/Kids-First/images-kf/KidsFirstPortal_21.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/nih-cfde/training-and-engagement/HEAD/docs/Common-Fund-Tools/Kids-First/images-kf/KidsFirstPortal_21.png -------------------------------------------------------------------------------- /docs/Common-Fund-Tools/Kids-First/images-kf/KidsFirstPortal_22.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/nih-cfde/training-and-engagement/HEAD/docs/Common-Fund-Tools/Kids-First/images-kf/KidsFirstPortal_22.png -------------------------------------------------------------------------------- /docs/Common-Fund-Tools/Kids-First/images-kf/KidsFirstPortal_23.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/nih-cfde/training-and-engagement/HEAD/docs/Common-Fund-Tools/Kids-First/images-kf/KidsFirstPortal_23.png -------------------------------------------------------------------------------- /docs/Common-Fund-Tools/Kids-First/images-kf/KidsFirstPortal_24.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/nih-cfde/training-and-engagement/HEAD/docs/Common-Fund-Tools/Kids-First/images-kf/KidsFirstPortal_24.png -------------------------------------------------------------------------------- /docs/Common-Fund-Tools/Kids-First/images-kf/KidsFirstPortal_25.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/nih-cfde/training-and-engagement/HEAD/docs/Common-Fund-Tools/Kids-First/images-kf/KidsFirstPortal_25.png -------------------------------------------------------------------------------- /docs/Common-Fund-Tools/Kids-First/images-kf/KidsFirstPortal_26.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/nih-cfde/training-and-engagement/HEAD/docs/Common-Fund-Tools/Kids-First/images-kf/KidsFirstPortal_26.png -------------------------------------------------------------------------------- /docs/Common-Fund-Tools/Kids-First/images-kf/KidsFirstPortal_27.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/nih-cfde/training-and-engagement/HEAD/docs/Common-Fund-Tools/Kids-First/images-kf/KidsFirstPortal_27.png -------------------------------------------------------------------------------- /docs/Common-Fund-Tools/Kids-First/images-kf/KidsFirstPortal_28.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/nih-cfde/training-and-engagement/HEAD/docs/Common-Fund-Tools/Kids-First/images-kf/KidsFirstPortal_28.png -------------------------------------------------------------------------------- /docs/Common-Fund-Tools/Kids-First/images-kf/KidsFirstPortal_29.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/nih-cfde/training-and-engagement/HEAD/docs/Common-Fund-Tools/Kids-First/images-kf/KidsFirstPortal_29.png -------------------------------------------------------------------------------- /docs/Common-Fund-Tools/Kids-First/images-kf/KidsFirstPortal_3.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/nih-cfde/training-and-engagement/HEAD/docs/Common-Fund-Tools/Kids-First/images-kf/KidsFirstPortal_3.png -------------------------------------------------------------------------------- /docs/Common-Fund-Tools/Kids-First/images-kf/KidsFirstPortal_30.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/nih-cfde/training-and-engagement/HEAD/docs/Common-Fund-Tools/Kids-First/images-kf/KidsFirstPortal_30.png -------------------------------------------------------------------------------- /docs/Common-Fund-Tools/Kids-First/images-kf/KidsFirstPortal_31.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/nih-cfde/training-and-engagement/HEAD/docs/Common-Fund-Tools/Kids-First/images-kf/KidsFirstPortal_31.png -------------------------------------------------------------------------------- /docs/Common-Fund-Tools/Kids-First/images-kf/KidsFirstPortal_32.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/nih-cfde/training-and-engagement/HEAD/docs/Common-Fund-Tools/Kids-First/images-kf/KidsFirstPortal_32.png -------------------------------------------------------------------------------- /docs/Common-Fund-Tools/Kids-First/images-kf/KidsFirstPortal_33.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/nih-cfde/training-and-engagement/HEAD/docs/Common-Fund-Tools/Kids-First/images-kf/KidsFirstPortal_33.png -------------------------------------------------------------------------------- /docs/Common-Fund-Tools/Kids-First/images-kf/KidsFirstPortal_34.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/nih-cfde/training-and-engagement/HEAD/docs/Common-Fund-Tools/Kids-First/images-kf/KidsFirstPortal_34.png -------------------------------------------------------------------------------- /docs/Common-Fund-Tools/Kids-First/images-kf/KidsFirstPortal_35.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/nih-cfde/training-and-engagement/HEAD/docs/Common-Fund-Tools/Kids-First/images-kf/KidsFirstPortal_35.png -------------------------------------------------------------------------------- /docs/Common-Fund-Tools/Kids-First/images-kf/KidsFirstPortal_36.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/nih-cfde/training-and-engagement/HEAD/docs/Common-Fund-Tools/Kids-First/images-kf/KidsFirstPortal_36.png -------------------------------------------------------------------------------- /docs/Common-Fund-Tools/Kids-First/images-kf/KidsFirstPortal_37.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/nih-cfde/training-and-engagement/HEAD/docs/Common-Fund-Tools/Kids-First/images-kf/KidsFirstPortal_37.png -------------------------------------------------------------------------------- /docs/Common-Fund-Tools/Kids-First/images-kf/KidsFirstPortal_38.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/nih-cfde/training-and-engagement/HEAD/docs/Common-Fund-Tools/Kids-First/images-kf/KidsFirstPortal_38.png -------------------------------------------------------------------------------- /docs/Common-Fund-Tools/Kids-First/images-kf/KidsFirstPortal_4.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/nih-cfde/training-and-engagement/HEAD/docs/Common-Fund-Tools/Kids-First/images-kf/KidsFirstPortal_4.png -------------------------------------------------------------------------------- /docs/Common-Fund-Tools/Kids-First/images-kf/KidsFirstPortal_5.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/nih-cfde/training-and-engagement/HEAD/docs/Common-Fund-Tools/Kids-First/images-kf/KidsFirstPortal_5.png -------------------------------------------------------------------------------- /docs/Common-Fund-Tools/Kids-First/images-kf/KidsFirstPortal_6.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/nih-cfde/training-and-engagement/HEAD/docs/Common-Fund-Tools/Kids-First/images-kf/KidsFirstPortal_6.png -------------------------------------------------------------------------------- /docs/Common-Fund-Tools/Kids-First/images-kf/KidsFirstPortal_7.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/nih-cfde/training-and-engagement/HEAD/docs/Common-Fund-Tools/Kids-First/images-kf/KidsFirstPortal_7.png -------------------------------------------------------------------------------- /docs/Common-Fund-Tools/Kids-First/images-kf/KidsFirstPortal_8.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/nih-cfde/training-and-engagement/HEAD/docs/Common-Fund-Tools/Kids-First/images-kf/KidsFirstPortal_8.png -------------------------------------------------------------------------------- /docs/Common-Fund-Tools/Kids-First/images-kf/KidsFirstPortal_9.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/nih-cfde/training-and-engagement/HEAD/docs/Common-Fund-Tools/Kids-First/images-kf/KidsFirstPortal_9.png -------------------------------------------------------------------------------- /docs/Common-Fund-Tools/Kids-First/images-kf/access_data_14.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/nih-cfde/training-and-engagement/HEAD/docs/Common-Fund-Tools/Kids-First/images-kf/access_data_14.png -------------------------------------------------------------------------------- /docs/Common-Fund-Tools/Kids-First/images-kf/cavatic_homepage_16.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/nih-cfde/training-and-engagement/HEAD/docs/Common-Fund-Tools/Kids-First/images-kf/cavatic_homepage_16.png -------------------------------------------------------------------------------- /docs/Common-Fund-Tools/Kids-First/images-kf/cavatica_login_15.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/nih-cfde/training-and-engagement/HEAD/docs/Common-Fund-Tools/Kids-First/images-kf/cavatica_login_15.png -------------------------------------------------------------------------------- /docs/Common-Fund-Tools/Kids-First/images-kf/cavatica_metadata_17.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/nih-cfde/training-and-engagement/HEAD/docs/Common-Fund-Tools/Kids-First/images-kf/cavatica_metadata_17.png -------------------------------------------------------------------------------- /docs/Common-Fund-Tools/Kids-First/images-kf/cavatica_project_created_13.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/nih-cfde/training-and-engagement/HEAD/docs/Common-Fund-Tools/Kids-First/images-kf/cavatica_project_created_13.png -------------------------------------------------------------------------------- /docs/Common-Fund-Tools/Kids-First/images-kf/kf_settings_10.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/nih-cfde/training-and-engagement/HEAD/docs/Common-Fund-Tools/Kids-First/images-kf/kf_settings_10.png -------------------------------------------------------------------------------- /docs/Common-Fund-Tools/Kids-First/images/Columns_Selection.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/nih-cfde/training-and-engagement/HEAD/docs/Common-Fund-Tools/Kids-First/images/Columns_Selection.png -------------------------------------------------------------------------------- /docs/Common-Fund-Tools/Kids-First/images/Edit_Metadata_Button.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/nih-cfde/training-and-engagement/HEAD/docs/Common-Fund-Tools/Kids-First/images/Edit_Metadata_Button.png -------------------------------------------------------------------------------- /docs/Common-Fund-Tools/Kids-First/images/Files_Tab.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/nih-cfde/training-and-engagement/HEAD/docs/Common-Fund-Tools/Kids-First/images/Files_Tab.png -------------------------------------------------------------------------------- /docs/Common-Fund-Tools/Kids-First/images/Popup_Window.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/nih-cfde/training-and-engagement/HEAD/docs/Common-Fund-Tools/Kids-First/images/Popup_Window.png -------------------------------------------------------------------------------- /docs/Common-Fund-Tools/Kids-First/images/Select_Samples.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/nih-cfde/training-and-engagement/HEAD/docs/Common-Fund-Tools/Kids-First/images/Select_Samples.png -------------------------------------------------------------------------------- /docs/Common-Fund-Tools/Kids-First/index.md: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/nih-cfde/training-and-engagement/HEAD/docs/Common-Fund-Tools/Kids-First/index.md -------------------------------------------------------------------------------- /docs/Common-Fund-Tools/index.md: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/nih-cfde/training-and-engagement/HEAD/docs/Common-Fund-Tools/index.md -------------------------------------------------------------------------------- /docs/General-Tools/.pages: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/nih-cfde/training-and-engagement/HEAD/docs/General-Tools/.pages -------------------------------------------------------------------------------- /docs/General-Tools/Cheat-Sheets/.pages: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/nih-cfde/training-and-engagement/HEAD/docs/General-Tools/Cheat-Sheets/.pages -------------------------------------------------------------------------------- /docs/General-Tools/Cheat-Sheets/bash_cheatsheet.md: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/nih-cfde/training-and-engagement/HEAD/docs/General-Tools/Cheat-Sheets/bash_cheatsheet.md -------------------------------------------------------------------------------- /docs/General-Tools/Cheat-Sheets/conda_cheatsheet.md: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/nih-cfde/training-and-engagement/HEAD/docs/General-Tools/Cheat-Sheets/conda_cheatsheet.md -------------------------------------------------------------------------------- /docs/General-Tools/Cheat-Sheets/index.md: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/nih-cfde/training-and-engagement/HEAD/docs/General-Tools/Cheat-Sheets/index.md -------------------------------------------------------------------------------- /docs/General-Tools/Cheat-Sheets/screen_cheatsheet.md: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/nih-cfde/training-and-engagement/HEAD/docs/General-Tools/Cheat-Sheets/screen_cheatsheet.md -------------------------------------------------------------------------------- /docs/General-Tools/Cheat-Sheets/snakemake_cheatsheet.md: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/nih-cfde/training-and-engagement/HEAD/docs/General-Tools/Cheat-Sheets/snakemake_cheatsheet.md -------------------------------------------------------------------------------- /docs/General-Tools/Introduction-to-Conda/conda-imgs/binder-save-files.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/nih-cfde/training-and-engagement/HEAD/docs/General-Tools/Introduction-to-Conda/conda-imgs/binder-save-files.png -------------------------------------------------------------------------------- /docs/General-Tools/Introduction-to-Conda/conda-imgs/conda-channel.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/nih-cfde/training-and-engagement/HEAD/docs/General-Tools/Introduction-to-Conda/conda-imgs/conda-channel.png -------------------------------------------------------------------------------- /docs/General-Tools/Introduction-to-Conda/conda-imgs/conda-envs.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/nih-cfde/training-and-engagement/HEAD/docs/General-Tools/Introduction-to-Conda/conda-imgs/conda-envs.png -------------------------------------------------------------------------------- /docs/General-Tools/Introduction-to-Conda/conda-imgs/conda-init.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/nih-cfde/training-and-engagement/HEAD/docs/General-Tools/Introduction-to-Conda/conda-imgs/conda-init.png -------------------------------------------------------------------------------- /docs/General-Tools/Introduction-to-Conda/conda-imgs/mini-ana-conda.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/nih-cfde/training-and-engagement/HEAD/docs/General-Tools/Introduction-to-Conda/conda-imgs/mini-ana-conda.png -------------------------------------------------------------------------------- /docs/General-Tools/Introduction-to-Conda/conda1.md: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/nih-cfde/training-and-engagement/HEAD/docs/General-Tools/Introduction-to-Conda/conda1.md -------------------------------------------------------------------------------- /docs/General-Tools/Introduction-to-Conda/conda2.md: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/nih-cfde/training-and-engagement/HEAD/docs/General-Tools/Introduction-to-Conda/conda2.md -------------------------------------------------------------------------------- /docs/General-Tools/Introduction-to-Conda/conda3.md: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/nih-cfde/training-and-engagement/HEAD/docs/General-Tools/Introduction-to-Conda/conda3.md -------------------------------------------------------------------------------- /docs/General-Tools/Introduction-to-Conda/conda4.md: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/nih-cfde/training-and-engagement/HEAD/docs/General-Tools/Introduction-to-Conda/conda4.md -------------------------------------------------------------------------------- /docs/General-Tools/Introduction-to-Conda/index.md: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/nih-cfde/training-and-engagement/HEAD/docs/General-Tools/Introduction-to-Conda/index.md -------------------------------------------------------------------------------- /docs/General-Tools/Introduction-to-Conda/install_conda_tutorial.md: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/nih-cfde/training-and-engagement/HEAD/docs/General-Tools/Introduction-to-Conda/install_conda_tutorial.md -------------------------------------------------------------------------------- /docs/General-Tools/R-for-RNA-Seq/.pages: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/nih-cfde/training-and-engagement/HEAD/docs/General-Tools/R-for-RNA-Seq/.pages -------------------------------------------------------------------------------- /docs/General-Tools/R-for-RNA-Seq/images/DEGs-1.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/nih-cfde/training-and-engagement/HEAD/docs/General-Tools/R-for-RNA-Seq/images/DEGs-1.png -------------------------------------------------------------------------------- /docs/General-Tools/R-for-RNA-Seq/images/DEGs-5.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/nih-cfde/training-and-engagement/HEAD/docs/General-Tools/R-for-RNA-Seq/images/DEGs-5.png -------------------------------------------------------------------------------- /docs/General-Tools/R-for-RNA-Seq/images/GTExPortal-1.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/nih-cfde/training-and-engagement/HEAD/docs/General-Tools/R-for-RNA-Seq/images/GTExPortal-1.png -------------------------------------------------------------------------------- /docs/General-Tools/R-for-RNA-Seq/images/GTExPortal-2.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/nih-cfde/training-and-engagement/HEAD/docs/General-Tools/R-for-RNA-Seq/images/GTExPortal-2.png -------------------------------------------------------------------------------- /docs/General-Tools/R-for-RNA-Seq/images/GTExPortal-3.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/nih-cfde/training-and-engagement/HEAD/docs/General-Tools/R-for-RNA-Seq/images/GTExPortal-3.png -------------------------------------------------------------------------------- /docs/General-Tools/R-for-RNA-Seq/images/GTExPortal-4.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/nih-cfde/training-and-engagement/HEAD/docs/General-Tools/R-for-RNA-Seq/images/GTExPortal-4.png -------------------------------------------------------------------------------- /docs/General-Tools/R-for-RNA-Seq/images/GTExPortal-5.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/nih-cfde/training-and-engagement/HEAD/docs/General-Tools/R-for-RNA-Seq/images/GTExPortal-5.png -------------------------------------------------------------------------------- /docs/General-Tools/R-for-RNA-Seq/images/RStudio.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/nih-cfde/training-and-engagement/HEAD/docs/General-Tools/R-for-RNA-Seq/images/RStudio.png -------------------------------------------------------------------------------- /docs/General-Tools/R-for-RNA-Seq/images/bar1-1.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/nih-cfde/training-and-engagement/HEAD/docs/General-Tools/R-for-RNA-Seq/images/bar1-1.png -------------------------------------------------------------------------------- /docs/General-Tools/R-for-RNA-Seq/images/bar2-1.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/nih-cfde/training-and-engagement/HEAD/docs/General-Tools/R-for-RNA-Seq/images/bar2-1.png -------------------------------------------------------------------------------- /docs/General-Tools/R-for-RNA-Seq/images/bar3-1.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/nih-cfde/training-and-engagement/HEAD/docs/General-Tools/R-for-RNA-Seq/images/bar3-1.png -------------------------------------------------------------------------------- /docs/General-Tools/R-for-RNA-Seq/images/bar4-1.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/nih-cfde/training-and-engagement/HEAD/docs/General-Tools/R-for-RNA-Seq/images/bar4-1.png -------------------------------------------------------------------------------- /docs/General-Tools/R-for-RNA-Seq/images/bar5-1.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/nih-cfde/training-and-engagement/HEAD/docs/General-Tools/R-for-RNA-Seq/images/bar5-1.png -------------------------------------------------------------------------------- /docs/General-Tools/R-for-RNA-Seq/images/boxplot-1.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/nih-cfde/training-and-engagement/HEAD/docs/General-Tools/R-for-RNA-Seq/images/boxplot-1.png -------------------------------------------------------------------------------- /docs/General-Tools/R-for-RNA-Seq/images/boxplot2-1.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/nih-cfde/training-and-engagement/HEAD/docs/General-Tools/R-for-RNA-Seq/images/boxplot2-1.png -------------------------------------------------------------------------------- /docs/General-Tools/R-for-RNA-Seq/images/volcano1-1.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/nih-cfde/training-and-engagement/HEAD/docs/General-Tools/R-for-RNA-Seq/images/volcano1-1.png -------------------------------------------------------------------------------- /docs/General-Tools/R-for-RNA-Seq/images/volcano2-1.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/nih-cfde/training-and-engagement/HEAD/docs/General-Tools/R-for-RNA-Seq/images/volcano2-1.png -------------------------------------------------------------------------------- /docs/General-Tools/R-for-RNA-Seq/images/volcano3-1.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/nih-cfde/training-and-engagement/HEAD/docs/General-Tools/R-for-RNA-Seq/images/volcano3-1.png -------------------------------------------------------------------------------- /docs/General-Tools/R-for-RNA-Seq/images/volcano4-1.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/nih-cfde/training-and-engagement/HEAD/docs/General-Tools/R-for-RNA-Seq/images/volcano4-1.png -------------------------------------------------------------------------------- /docs/General-Tools/R-for-RNA-Seq/import.md: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/nih-cfde/training-and-engagement/HEAD/docs/General-Tools/R-for-RNA-Seq/import.md -------------------------------------------------------------------------------- /docs/General-Tools/R-for-RNA-Seq/index.md: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/nih-cfde/training-and-engagement/HEAD/docs/General-Tools/R-for-RNA-Seq/index.md -------------------------------------------------------------------------------- /docs/General-Tools/R-for-RNA-Seq/intro.md: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/nih-cfde/training-and-engagement/HEAD/docs/General-Tools/R-for-RNA-Seq/intro.md -------------------------------------------------------------------------------- /docs/General-Tools/R-for-RNA-Seq/visualize.md: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/nih-cfde/training-and-engagement/HEAD/docs/General-Tools/R-for-RNA-Seq/visualize.md -------------------------------------------------------------------------------- /docs/General-Tools/R-for-RNA-Seq/wrangle.md: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/nih-cfde/training-and-engagement/HEAD/docs/General-Tools/R-for-RNA-Seq/wrangle.md -------------------------------------------------------------------------------- /docs/General-Tools/R-for-RNA-Seq/wrapup.md: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/nih-cfde/training-and-engagement/HEAD/docs/General-Tools/R-for-RNA-Seq/wrapup.md -------------------------------------------------------------------------------- /docs/General-Tools/Snakemake/.pages: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/nih-cfde/training-and-engagement/HEAD/docs/General-Tools/Snakemake/.pages -------------------------------------------------------------------------------- /docs/General-Tools/Snakemake/example_snakefile.md: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/nih-cfde/training-and-engagement/HEAD/docs/General-Tools/Snakemake/example_snakefile.md -------------------------------------------------------------------------------- /docs/General-Tools/Snakemake/images-snakemake/snakemake_binder_close.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/nih-cfde/training-and-engagement/HEAD/docs/General-Tools/Snakemake/images-snakemake/snakemake_binder_close.png -------------------------------------------------------------------------------- /docs/General-Tools/Snakemake/images-snakemake/snakemake_binder_download.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/nih-cfde/training-and-engagement/HEAD/docs/General-Tools/Snakemake/images-snakemake/snakemake_binder_download.png -------------------------------------------------------------------------------- /docs/General-Tools/Snakemake/images-snakemake/snakemake_binder_terminal.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/nih-cfde/training-and-engagement/HEAD/docs/General-Tools/Snakemake/images-snakemake/snakemake_binder_terminal.png -------------------------------------------------------------------------------- /docs/General-Tools/Snakemake/images-snakemake/snakemake_downloaddata.jpeg: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/nih-cfde/training-and-engagement/HEAD/docs/General-Tools/Snakemake/images-snakemake/snakemake_downloaddata.jpeg -------------------------------------------------------------------------------- /docs/General-Tools/Snakemake/images-snakemake/snakemake_nothingtobedone.jpeg: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/nih-cfde/training-and-engagement/HEAD/docs/General-Tools/Snakemake/images-snakemake/snakemake_nothingtobedone.jpeg -------------------------------------------------------------------------------- /docs/General-Tools/Snakemake/images-snakemake/snakemake_rule_error_msg.jpeg: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/nih-cfde/training-and-engagement/HEAD/docs/General-Tools/Snakemake/images-snakemake/snakemake_rule_error_msg.jpeg -------------------------------------------------------------------------------- /docs/General-Tools/Snakemake/images-snakemake/snakemake_twosteps.jpeg: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/nih-cfde/training-and-engagement/HEAD/docs/General-Tools/Snakemake/images-snakemake/snakemake_twosteps.jpeg -------------------------------------------------------------------------------- /docs/General-Tools/Snakemake/images-snakemake/vc_workflow_dag.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/nih-cfde/training-and-engagement/HEAD/docs/General-Tools/Snakemake/images-snakemake/vc_workflow_dag.png -------------------------------------------------------------------------------- /docs/General-Tools/Snakemake/index.md: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/nih-cfde/training-and-engagement/HEAD/docs/General-Tools/Snakemake/index.md -------------------------------------------------------------------------------- /docs/General-Tools/Snakemake/snakemake_0.md: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/nih-cfde/training-and-engagement/HEAD/docs/General-Tools/Snakemake/snakemake_0.md -------------------------------------------------------------------------------- /docs/General-Tools/Snakemake/snakemake_1.md: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/nih-cfde/training-and-engagement/HEAD/docs/General-Tools/Snakemake/snakemake_1.md -------------------------------------------------------------------------------- /docs/General-Tools/Snakemake/snakemake_2.md: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/nih-cfde/training-and-engagement/HEAD/docs/General-Tools/Snakemake/snakemake_2.md -------------------------------------------------------------------------------- /docs/General-Tools/Snakemake/snakemake_3.md: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/nih-cfde/training-and-engagement/HEAD/docs/General-Tools/Snakemake/snakemake_3.md -------------------------------------------------------------------------------- /docs/General-Tools/Snakemake/snakemake_4.md: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/nih-cfde/training-and-engagement/HEAD/docs/General-Tools/Snakemake/snakemake_4.md -------------------------------------------------------------------------------- /docs/General-Tools/Snakemake/snakemake_5.md: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/nih-cfde/training-and-engagement/HEAD/docs/General-Tools/Snakemake/snakemake_5.md -------------------------------------------------------------------------------- /docs/General-Tools/Snakemake/snakemake_tutorial_docs/Snakefile.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/nih-cfde/training-and-engagement/HEAD/docs/General-Tools/Snakemake/snakemake_tutorial_docs/Snakefile.py -------------------------------------------------------------------------------- /docs/General-Tools/Snakemake/snakemake_tutorial_docs/environment.yml: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/nih-cfde/training-and-engagement/HEAD/docs/General-Tools/Snakemake/snakemake_tutorial_docs/environment.yml -------------------------------------------------------------------------------- /docs/General-Tools/UNIX/.pages: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/nih-cfde/training-and-engagement/HEAD/docs/General-Tools/UNIX/.pages -------------------------------------------------------------------------------- /docs/General-Tools/UNIX/appendix.md: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/nih-cfde/training-and-engagement/HEAD/docs/General-Tools/UNIX/appendix.md -------------------------------------------------------------------------------- /docs/General-Tools/UNIX/find.md: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/nih-cfde/training-and-engagement/HEAD/docs/General-Tools/UNIX/find.md -------------------------------------------------------------------------------- /docs/General-Tools/UNIX/index.md: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/nih-cfde/training-and-engagement/HEAD/docs/General-Tools/UNIX/index.md -------------------------------------------------------------------------------- /docs/General-Tools/UNIX/intro.md: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/nih-cfde/training-and-engagement/HEAD/docs/General-Tools/UNIX/intro.md -------------------------------------------------------------------------------- /docs/General-Tools/UNIX/navigate.md: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/nih-cfde/training-and-engagement/HEAD/docs/General-Tools/UNIX/navigate.md -------------------------------------------------------------------------------- /docs/General-Tools/UNIX/read.md: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/nih-cfde/training-and-engagement/HEAD/docs/General-Tools/UNIX/read.md -------------------------------------------------------------------------------- /docs/General-Tools/UNIX/redirect.md: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/nih-cfde/training-and-engagement/HEAD/docs/General-Tools/UNIX/redirect.md -------------------------------------------------------------------------------- /docs/General-Tools/UNIX/work.md: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/nih-cfde/training-and-engagement/HEAD/docs/General-Tools/UNIX/work.md -------------------------------------------------------------------------------- /docs/General-Tools/Web-Development/.pages: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/nih-cfde/training-and-engagement/HEAD/docs/General-Tools/Web-Development/.pages -------------------------------------------------------------------------------- /docs/General-Tools/Web-Development/Javascript-dropdown-box-resources/.pages: -------------------------------------------------------------------------------- 1 | hide: true 2 | -------------------------------------------------------------------------------- /docs/General-Tools/Web-Development/Javascript-dropdown-box-resources/demo_javascript.md: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/nih-cfde/training-and-engagement/HEAD/docs/General-Tools/Web-Development/Javascript-dropdown-box-resources/demo_javascript.md -------------------------------------------------------------------------------- /docs/General-Tools/Web-Development/Javascript-dropdown-box-resources/demo_javascript_rendered.md: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/nih-cfde/training-and-engagement/HEAD/docs/General-Tools/Web-Development/Javascript-dropdown-box-resources/demo_javascript_rendered.md -------------------------------------------------------------------------------- /docs/General-Tools/Web-Development/Javascript-dropdown-box/.pages: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/nih-cfde/training-and-engagement/HEAD/docs/General-Tools/Web-Development/Javascript-dropdown-box/.pages -------------------------------------------------------------------------------- /docs/General-Tools/Web-Development/Javascript-dropdown-box/demo_javascript.md: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/nih-cfde/training-and-engagement/HEAD/docs/General-Tools/Web-Development/Javascript-dropdown-box/demo_javascript.md -------------------------------------------------------------------------------- /docs/General-Tools/Web-Development/Javascript-dropdown-box/demo_javascript_rendered.md: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/nih-cfde/training-and-engagement/HEAD/docs/General-Tools/Web-Development/Javascript-dropdown-box/demo_javascript_rendered.md -------------------------------------------------------------------------------- /docs/General-Tools/Web-Development/Javascript-dropdown-box/javascript_chooser.md: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/nih-cfde/training-and-engagement/HEAD/docs/General-Tools/Web-Development/Javascript-dropdown-box/javascript_chooser.md -------------------------------------------------------------------------------- /docs/General-Tools/Web-Development/Jekyll_Tutorial.md: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/nih-cfde/training-and-engagement/HEAD/docs/General-Tools/Web-Development/Jekyll_Tutorial.md -------------------------------------------------------------------------------- /docs/General-Tools/Web-Development/Sphinx_Tutorial.md: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/nih-cfde/training-and-engagement/HEAD/docs/General-Tools/Web-Development/Sphinx_Tutorial.md -------------------------------------------------------------------------------- /docs/General-Tools/Web-Development/index.md: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/nih-cfde/training-and-engagement/HEAD/docs/General-Tools/Web-Development/index.md -------------------------------------------------------------------------------- /docs/General-Tools/Web-Development/javascript_chooser.md: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/nih-cfde/training-and-engagement/HEAD/docs/General-Tools/Web-Development/javascript_chooser.md -------------------------------------------------------------------------------- /docs/General-Tools/Web-Development/mkdocs.md: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/nih-cfde/training-and-engagement/HEAD/docs/General-Tools/Web-Development/mkdocs.md -------------------------------------------------------------------------------- /docs/General-Tools/index.md: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/nih-cfde/training-and-engagement/HEAD/docs/General-Tools/index.md -------------------------------------------------------------------------------- /docs/General-Tools/install_conda_tutorial.md: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/nih-cfde/training-and-engagement/HEAD/docs/General-Tools/install_conda_tutorial.md -------------------------------------------------------------------------------- /docs/LINCS/.pages: -------------------------------------------------------------------------------- 1 | hide: true 2 | -------------------------------------------------------------------------------- /docs/LINCS/LINCS_index.md: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/nih-cfde/training-and-engagement/HEAD/docs/LINCS/LINCS_index.md -------------------------------------------------------------------------------- /docs/LINCS/LINCS_index.rst: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/nih-cfde/training-and-engagement/HEAD/docs/LINCS/LINCS_index.rst -------------------------------------------------------------------------------- /docs/Release-Notes/.pages: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/nih-cfde/training-and-engagement/HEAD/docs/Release-Notes/.pages -------------------------------------------------------------------------------- /docs/Release-Notes/April-2022.md: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/nih-cfde/training-and-engagement/HEAD/docs/Release-Notes/April-2022.md -------------------------------------------------------------------------------- /docs/Release-Notes/December-2020.md: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/nih-cfde/training-and-engagement/HEAD/docs/Release-Notes/December-2020.md -------------------------------------------------------------------------------- /docs/Release-Notes/December-2021.md: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/nih-cfde/training-and-engagement/HEAD/docs/Release-Notes/December-2021.md -------------------------------------------------------------------------------- /docs/Release-Notes/February-2021.md: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/nih-cfde/training-and-engagement/HEAD/docs/Release-Notes/February-2021.md -------------------------------------------------------------------------------- /docs/Release-Notes/February-2022.md: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/nih-cfde/training-and-engagement/HEAD/docs/Release-Notes/February-2022.md -------------------------------------------------------------------------------- /docs/Release-Notes/June-2021.md: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/nih-cfde/training-and-engagement/HEAD/docs/Release-Notes/June-2021.md -------------------------------------------------------------------------------- /docs/Release-Notes/October-2020.md: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/nih-cfde/training-and-engagement/HEAD/docs/Release-Notes/October-2020.md -------------------------------------------------------------------------------- /docs/Release-Notes/history.md: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/nih-cfde/training-and-engagement/HEAD/docs/Release-Notes/history.md -------------------------------------------------------------------------------- /docs/Release-Notes/index.md: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/nih-cfde/training-and-engagement/HEAD/docs/Release-Notes/index.md -------------------------------------------------------------------------------- /docs/Website-Style-Guide/.pages: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/nih-cfde/training-and-engagement/HEAD/docs/Website-Style-Guide/.pages -------------------------------------------------------------------------------- /docs/Website-Style-Guide/1WebsiteNavStyle.md: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/nih-cfde/training-and-engagement/HEAD/docs/Website-Style-Guide/1WebsiteNavStyle.md -------------------------------------------------------------------------------- /docs/Website-Style-Guide/2GenTutorialStyle.md: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/nih-cfde/training-and-engagement/HEAD/docs/Website-Style-Guide/2GenTutorialStyle.md -------------------------------------------------------------------------------- /docs/Website-Style-Guide/3TutorialComponents.md: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/nih-cfde/training-and-engagement/HEAD/docs/Website-Style-Guide/3TutorialComponents.md -------------------------------------------------------------------------------- /docs/Website-Style-Guide/4RecordingStyleGuide.md: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/nih-cfde/training-and-engagement/HEAD/docs/Website-Style-Guide/4RecordingStyleGuide.md -------------------------------------------------------------------------------- /docs/Website-Style-Guide/5PangeoBinderGuide.md: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/nih-cfde/training-and-engagement/HEAD/docs/Website-Style-Guide/5PangeoBinderGuide.md -------------------------------------------------------------------------------- /docs/Website-Style-Guide/6PracticeGithubRepos.md: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/nih-cfde/training-and-engagement/HEAD/docs/Website-Style-Guide/6PracticeGithubRepos.md -------------------------------------------------------------------------------- /docs/Website-Style-Guide/7ReleasePlan.md: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/nih-cfde/training-and-engagement/HEAD/docs/Website-Style-Guide/7ReleasePlan.md -------------------------------------------------------------------------------- /docs/Website-Style-Guide/8TutorialTemplate.md: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/nih-cfde/training-and-engagement/HEAD/docs/Website-Style-Guide/8TutorialTemplate.md -------------------------------------------------------------------------------- /docs/Website-Style-Guide/index.md: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/nih-cfde/training-and-engagement/HEAD/docs/Website-Style-Guide/index.md -------------------------------------------------------------------------------- /docs/__pycache__/hidden_code_block.cpython-38.pyc: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/nih-cfde/training-and-engagement/HEAD/docs/__pycache__/hidden_code_block.cpython-38.pyc -------------------------------------------------------------------------------- /docs/images/ARCHS4-YT-1.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/nih-cfde/training-and-engagement/HEAD/docs/images/ARCHS4-YT-1.png -------------------------------------------------------------------------------- /docs/images/CFDE-logo-white-outline.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/nih-cfde/training-and-engagement/HEAD/docs/images/CFDE-logo-white-outline.png -------------------------------------------------------------------------------- /docs/images/CFDE-logo.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/nih-cfde/training-and-engagement/HEAD/docs/images/CFDE-logo.png -------------------------------------------------------------------------------- /docs/images/CFDEwordcloud.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/nih-cfde/training-and-engagement/HEAD/docs/images/CFDEwordcloud.png -------------------------------------------------------------------------------- /docs/images/IDGPharosYT_1.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/nih-cfde/training-and-engagement/HEAD/docs/images/IDGPharosYT_1.png -------------------------------------------------------------------------------- /docs/images/IDGPharosYT_2.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/nih-cfde/training-and-engagement/HEAD/docs/images/IDGPharosYT_2.png -------------------------------------------------------------------------------- /docs/images/IDG_Logo.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/nih-cfde/training-and-engagement/HEAD/docs/images/IDG_Logo.png -------------------------------------------------------------------------------- /docs/images/PrismExp-YT-1.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/nih-cfde/training-and-engagement/HEAD/docs/images/PrismExp-YT-1.png -------------------------------------------------------------------------------- /docs/images/Release_workflow_training_repo.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/nih-cfde/training-and-engagement/HEAD/docs/images/Release_workflow_training_repo.png -------------------------------------------------------------------------------- /docs/images/Simulated_Data_Fastqc.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/nih-cfde/training-and-engagement/HEAD/docs/images/Simulated_Data_Fastqc.png -------------------------------------------------------------------------------- /docs/images/Simulated_Data_t2xlarge.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/nih-cfde/training-and-engagement/HEAD/docs/images/Simulated_Data_t2xlarge.png -------------------------------------------------------------------------------- /docs/images/Simulated_Data_t2xlarge_storage.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/nih-cfde/training-and-engagement/HEAD/docs/images/Simulated_Data_t2xlarge_storage.png -------------------------------------------------------------------------------- /docs/images/drs-1.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/nih-cfde/training-and-engagement/HEAD/docs/images/drs-1.png -------------------------------------------------------------------------------- /docs/images/drs-2.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/nih-cfde/training-and-engagement/HEAD/docs/images/drs-2.png -------------------------------------------------------------------------------- /docs/images/drs-3.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/nih-cfde/training-and-engagement/HEAD/docs/images/drs-3.png -------------------------------------------------------------------------------- /docs/images/drs-4.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/nih-cfde/training-and-engagement/HEAD/docs/images/drs-4.png -------------------------------------------------------------------------------- /docs/images/drugcentralYT_1.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/nih-cfde/training-and-engagement/HEAD/docs/images/drugcentralYT_1.png -------------------------------------------------------------------------------- /docs/images/drugshotYT_1.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/nih-cfde/training-and-engagement/HEAD/docs/images/drugshotYT_1.png -------------------------------------------------------------------------------- /docs/images/geneshot-YT-1.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/nih-cfde/training-and-engagement/HEAD/docs/images/geneshot-YT-1.png -------------------------------------------------------------------------------- /docs/images/harmonizome-YT-1.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/nih-cfde/training-and-engagement/HEAD/docs/images/harmonizome-YT-1.png -------------------------------------------------------------------------------- /docs/images/iHMP-tutorial.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/nih-cfde/training-and-engagement/HEAD/docs/images/iHMP-tutorial.png -------------------------------------------------------------------------------- /docs/images/idg_logo_vertical.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/nih-cfde/training-and-engagement/HEAD/docs/images/idg_logo_vertical.png -------------------------------------------------------------------------------- /docs/images/kea3YT_1.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/nih-cfde/training-and-engagement/HEAD/docs/images/kea3YT_1.png -------------------------------------------------------------------------------- /docs/images/orcid-error.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/nih-cfde/training-and-engagement/HEAD/docs/images/orcid-error.png -------------------------------------------------------------------------------- /docs/images/tigaYT_1.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/nih-cfde/training-and-engagement/HEAD/docs/images/tigaYT_1.png -------------------------------------------------------------------------------- /docs/images/tinx-YT-1.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/nih-cfde/training-and-engagement/HEAD/docs/images/tinx-YT-1.png -------------------------------------------------------------------------------- /docs/images/workshop-history.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/nih-cfde/training-and-engagement/HEAD/docs/images/workshop-history.png -------------------------------------------------------------------------------- /docs/index.md: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/nih-cfde/training-and-engagement/HEAD/docs/index.md -------------------------------------------------------------------------------- /docs/javascripts/asciinema-player.js: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/nih-cfde/training-and-engagement/HEAD/docs/javascripts/asciinema-player.js -------------------------------------------------------------------------------- /docs/javascripts/cls.min.js: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/nih-cfde/training-and-engagement/HEAD/docs/javascripts/cls.min.js -------------------------------------------------------------------------------- /docs/javascripts/extra.js: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/nih-cfde/training-and-engagement/HEAD/docs/javascripts/extra.js -------------------------------------------------------------------------------- /docs/javascripts/medium-zoom.min.js: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/nih-cfde/training-and-engagement/HEAD/docs/javascripts/medium-zoom.min.js -------------------------------------------------------------------------------- /docs/requirements.txt: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/nih-cfde/training-and-engagement/HEAD/docs/requirements.txt -------------------------------------------------------------------------------- /docs/stylesheets/asciinema-player.css: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/nih-cfde/training-and-engagement/HEAD/docs/stylesheets/asciinema-player.css -------------------------------------------------------------------------------- /docs/stylesheets/extra.css: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/nih-cfde/training-and-engagement/HEAD/docs/stylesheets/extra.css -------------------------------------------------------------------------------- /hackmd/AWS.md: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/nih-cfde/training-and-engagement/HEAD/hackmd/AWS.md -------------------------------------------------------------------------------- /hackmd/README.md: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/nih-cfde/training-and-engagement/HEAD/hackmd/README.md -------------------------------------------------------------------------------- /hackmd/UNIX.md: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/nih-cfde/training-and-engagement/HEAD/hackmd/UNIX.md -------------------------------------------------------------------------------- /image.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/nih-cfde/training-and-engagement/HEAD/image.png -------------------------------------------------------------------------------- /mkdocs.yml: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/nih-cfde/training-and-engagement/HEAD/mkdocs.yml -------------------------------------------------------------------------------- /requirements.txt: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/nih-cfde/training-and-engagement/HEAD/requirements.txt -------------------------------------------------------------------------------- /workshop-resources/images/Screen_Arrangement_AWS.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/nih-cfde/training-and-engagement/HEAD/workshop-resources/images/Screen_Arrangement_AWS.png -------------------------------------------------------------------------------- /workshop-resources/images/conda_rstudio_pane_adjust.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/nih-cfde/training-and-engagement/HEAD/workshop-resources/images/conda_rstudio_pane_adjust.png -------------------------------------------------------------------------------- /workshop-resources/images/conda_workshop_screen_resize.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/nih-cfde/training-and-engagement/HEAD/workshop-resources/images/conda_workshop_screen_resize.png -------------------------------------------------------------------------------- /workshop-resources/images/export_binder_files.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/nih-cfde/training-and-engagement/HEAD/workshop-resources/images/export_binder_files.png -------------------------------------------------------------------------------- /workshop-resources/images/launch_binder_button.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/nih-cfde/training-and-engagement/HEAD/workshop-resources/images/launch_binder_button.png -------------------------------------------------------------------------------- /workshop-resources/images/workshop_communication.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/nih-cfde/training-and-engagement/HEAD/workshop-resources/images/workshop_communication.png -------------------------------------------------------------------------------- /workshop-resources/images/workshop_communication_2.jpeg: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/nih-cfde/training-and-engagement/HEAD/workshop-resources/images/workshop_communication_2.jpeg --------------------------------------------------------------------------------