├── Dockerfile ├── LICENSE ├── README.md ├── configs ├── abdom │ ├── pixel │ │ ├── axis_0 │ │ │ └── train_config.yaml │ │ └── axis_2 │ │ │ └── train_config.yaml │ └── sample │ │ ├── axis_0 │ │ └── train_config.yaml │ │ └── axis_2 │ │ └── train_config.yaml ├── brain │ ├── pixel │ │ ├── axis_0 │ │ │ └── train_config.yaml │ │ ├── axis_1 │ │ │ └── train_config.yaml │ │ └── axis_2 │ │ │ └── train_config.yaml │ └── sample │ │ ├── axis_0 │ │ └── train_config.yaml │ │ ├── axis_1 │ │ └── train_config.yaml │ │ └── axis_2 │ │ └── train_config.yaml ├── inference_3d_example.yaml └── train_example.yaml ├── folds ├── abdom │ └── train_folds_10.csv └── brain │ └── train_folds_10.csv ├── mood ├── __init__.py ├── dpa │ ├── __init__.py │ ├── data_generators.py │ ├── evaluate.py │ ├── feature_extractor.py │ ├── inference_evaluate_3d.py │ ├── layers.py │ ├── main.py │ ├── optimizer.py │ ├── pg_decoders.py │ ├── pg_encoders.py │ ├── pg_networks.py │ ├── pg_rec_losses.py │ ├── rec_losses.py │ └── train.py ├── main.py └── utils │ ├── __init__.py │ ├── datasets.py │ ├── loggers.py │ ├── preprocessing │ ├── __init__.py │ ├── create_2d_val_dataset_with_synthetic_anomalies.py │ ├── create_folds.py │ ├── create_val_dataset_with_synthetic_anomalies.py │ └── save_2D.py │ ├── transforms.py │ └── utils.py ├── requirements.txt ├── setup.py └── submission_data ├── configs ├── abdom_pixel.yaml ├── abdom_sample.yaml ├── brain_pixel.yaml └── brain_sample.yaml └── scripts ├── predict_3d.py ├── run_pixel_abdom.sh ├── run_pixel_brain.sh ├── run_sample_abdom.sh └── run_sample_brain.sh /Dockerfile: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/ninatu/mood_challenge/HEAD/Dockerfile -------------------------------------------------------------------------------- /LICENSE: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/ninatu/mood_challenge/HEAD/LICENSE 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