├── .dockerignore ├── .git_archival.txt ├── .gitattributes ├── .github └── workflows │ ├── python-publish.yml │ └── pythonpackage.yml ├── .gitignore ├── .mailmap ├── .maint ├── contributors.json ├── developers.json ├── former.json ├── paper_author_list.py ├── update_changes.sh └── update_zenodo.py ├── .zenodo.json ├── CHANGES.rst ├── Dockerfile ├── LICENSE ├── MANIFEST.in ├── README.rst ├── docker └── files │ ├── neurodebian.gpg │ └── nipype.cfg ├── docs └── notebooks │ └── brainextraction_tutorial.ipynb ├── nirodents ├── __init__.py ├── cli │ ├── __init__.py │ ├── brainextraction.py │ └── plotmask.py ├── data │ ├── artsBrainExtraction_precise_T2w.json │ ├── artsBrainExtraction_testing_T2w.json │ ├── brainextraction_2stage_T1w.json │ ├── brainextraction_2stage_T2w.json │ ├── brainextraction_3stage_T1w.json │ ├── brainextraction_3stage_T2w.json │ ├── brainextraction_precise_T1w.json │ ├── brainextraction_precise_T2w.json │ └── testdata │ │ └── sub-15 │ │ └── anat │ │ └── sub-15_T2w.nii.gz ├── interfaces.py ├── utils │ ├── __init__.py │ └── filtering.py ├── viz.py └── workflows │ ├── __init__.py │ └── brainextraction.py ├── pyproject.toml ├── setup.cfg └── setup.py /.dockerignore: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/nipreps/nirodents/HEAD/.dockerignore -------------------------------------------------------------------------------- /.git_archival.txt: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/nipreps/nirodents/HEAD/.git_archival.txt -------------------------------------------------------------------------------- /.gitattributes: -------------------------------------------------------------------------------- 1 | .git_archival.txt export-subst 2 | 3 | -------------------------------------------------------------------------------- /.github/workflows/python-publish.yml: 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