├── .editorconfig ├── .flake8 ├── .github └── ISSUE_TEMPLATE.md ├── .gitignore ├── .pre-commit-config.yaml ├── .travis.yml ├── AUTHORS.md ├── CONTRIBUTING.rst ├── Dockerfile-dmriprep ├── HISTORY.rst ├── LICENSE ├── MANIFEST.in ├── Makefile ├── README.md ├── dmriprep-docker ├── dmriprep ├── __init__.py ├── cli.py ├── data.py ├── dmriprep.py ├── io.py ├── qc.py ├── run.py └── utils.py ├── dmriprepViewer ├── .babelrc ├── .editorconfig ├── .eslintignore ├── .eslintrc.js ├── .gitignore ├── .postcssrc.js ├── .snyk ├── README.md ├── build │ ├── build.js │ ├── check-versions.js │ ├── logo.png │ ├── utils.js │ ├── vue-loader.conf.js │ ├── webpack.base.conf.js │ ├── webpack.dev.conf.js │ └── webpack.prod.conf.js ├── config │ ├── dev.env.js │ ├── index.js │ ├── prod.env.js │ └── test.env.js ├── deploy.sh ├── index.html ├── package-lock.json ├── package.json ├── src │ ├── App.vue │ ├── assets │ │ └── logo.svg │ ├── components │ │ ├── BrainSprite.vue │ │ ├── Bucket.vue │ │ ├── GroupStats.vue │ │ ├── HelloWorld.vue │ │ ├── LineChart.vue │ │ ├── Report.vue │ │ ├── Sprite4D.vue │ │ └── brainsprite.js │ ├── main.js │ └── router │ │ └── index.js ├── static │ └── .gitkeep └── test │ ├── e2e │ ├── custom-assertions │ │ └── elementCount.js │ ├── nightwatch.conf.js │ ├── runner.js │ └── specs │ │ └── test.js │ └── unit │ ├── .eslintrc │ ├── jest.conf.js │ ├── setup.js │ └── specs │ └── HelloWorld.spec.js ├── docker ├── Dockerfile ├── environment.yml └── license.txt ├── docs ├── Makefile ├── authors.rst ├── conf.py ├── contributing.rst ├── history.rst ├── img │ └── dmriprep_icon.svg ├── index.rst ├── installation.rst ├── make.bat └── usage.rst ├── kubernetes ├── create_kube_job.py ├── delete_cluster.sh ├── delete_job.sh ├── docker │ ├── build_tag_push.sh │ ├── dmriprep_all.sh │ └── dockerfile-dmriprep-kube ├── run_dmriprep.yml.tmpl ├── run_job.sh └── setup_gcp_kubernetes_dmriprep.sh ├── requirements.txt ├── requirements_dev.txt ├── setup.cfg ├── setup.py ├── tests ├── test_dmriprep.py 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