├── .gitignore ├── DESCRIPTION ├── Figure1.png ├── NAMESPACE ├── NEWS.md ├── R ├── AutoScore.R ├── AutoScore_Ordinal.R ├── AutoScore_Survival.R ├── bca.R └── common.R ├── README.md ├── README_Paper.md ├── README_files └── figure-gfm │ ├── parsi-1.png │ ├── scoring-1.png │ ├── scoring2-1.png │ ├── unnamed-chunk-10-1.png │ ├── unnamed-chunk-14-1.png │ ├── unnamed-chunk-18-1.png │ ├── unnamed-chunk-28-1.png │ ├── unnamed-chunk-7-1.png │ ├── weighting-1.png │ └── weighting2-1.png ├── _config.yml ├── data ├── sample_data.rda ├── sample_data_ordinal.rda ├── sample_data_ordinal_small.rda ├── sample_data_small.rda ├── sample_data_survival.rda ├── sample_data_survival_small.rda └── sample_data_with_missing.rda ├── inst └── CITATION ├── man ├── AutoScore_fine_tuning.Rd ├── AutoScore_fine_tuning_Ordinal.Rd ├── AutoScore_fine_tuning_Survival.Rd ├── AutoScore_impute.Rd ├── AutoScore_parsimony.Rd ├── AutoScore_parsimony_Ordinal.Rd ├── AutoScore_parsimony_Survival.Rd ├── AutoScore_rank.Rd ├── AutoScore_rank_Ordinal.Rd ├── AutoScore_rank_Survival.Rd ├── AutoScore_testing.Rd ├── AutoScore_testing_Ordinal.Rd ├── AutoScore_testing_Survival.Rd ├── AutoScore_weighting.Rd ├── AutoScore_weighting_Ordinal.Rd ├── AutoScore_weighting_Survival.Rd ├── add_baseline.Rd ├── assign_score.Rd ├── bca.Rd ├── change_reference.Rd ├── check_data.Rd ├── check_data_ordinal.Rd ├── check_data_survival.Rd ├── check_link.Rd ├── check_predictor.Rd ├── compute_auc_val.Rd ├── compute_auc_val_ord.Rd ├── compute_auc_val_survival.Rd ├── compute_descriptive_table.Rd ├── compute_final_score_ord.Rd ├── compute_mauc_ord.Rd ├── compute_multi_variable_table.Rd ├── compute_multi_variable_table_ordinal.Rd ├── compute_multi_variable_table_survival.Rd ├── compute_prob_observed.Rd ├── compute_prob_predicted.Rd ├── compute_score_table.Rd ├── compute_score_table_ord.Rd ├── compute_score_table_survival.Rd ├── compute_uni_variable_table.Rd ├── compute_uni_variable_table_ordinal.Rd ├── compute_uni_variable_table_survival.Rd ├── conversion_table.Rd ├── conversion_table_ordinal.Rd ├── conversion_table_survival.Rd ├── estimate_p_mat.Rd ├── eva_performance_iauc.Rd ├── evaluate_model_ord.Rd ├── extract_or_ci_ord.Rd ├── find_one_inds.Rd ├── find_possible_scores.Rd ├── get_cut_vec.Rd ├── group_score.Rd ├── induce_informative_missing.Rd ├── induce_median_missing.Rd ├── inv_cloglog.Rd ├── inv_logit.Rd ├── inv_probit.Rd ├── make_design_mat.Rd ├── plot_auc.Rd ├── plot_importance.Rd ├── plot_predicted_risk.Rd ├── plot_roc_curve.Rd ├── plot_survival_km.Rd ├── print_performance_ci_survival.Rd ├── print_performance_ordinal.Rd ├── print_performance_survival.Rd ├── print_roc_performance.Rd ├── print_scoring_table.Rd ├── sample_data.Rd ├── sample_data_ordinal.Rd ├── sample_data_ordinal_small.Rd ├── sample_data_small.Rd ├── sample_data_survival.Rd ├── sample_data_survival_small.Rd ├── sample_data_with_missing.Rd ├── split_data.Rd └── transform_df_fixed.Rd └── vignettes ├── .gitignore └── brief_intro.Rmd /.gitignore: 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