├── LICENSE.md ├── README.md ├── docs └── img │ └── Atlas.U25.l4.png ├── src ├── atlas_heatmap.R ├── binary.py ├── build.py ├── deconv.py ├── heatmap.py ├── homog_mem.py ├── plot.py └── uxm.py ├── supplemental ├── Atlas.U25.l4.hg19.full.tsv ├── Atlas.U25.l4.hg19.tsv ├── Atlas.U25.l4.hg38.full.tsv ├── Atlas.U25.l4.hg38.tsv ├── Atlas.U250.l4.hg19.full.tsv ├── Atlas.U250.l4.hg19.tsv ├── Atlas.U250.l4.hg38.full.tsv ├── Markers.U250.hg19.tsv └── Markers.U250.hg38.tsv ├── tutorial ├── Markers.U25.bed ├── README.md └── data │ ├── Liver_STL011.pat.gz │ ├── Liver_STL011.pat.gz.csi │ ├── Lung_STL001.pat.gz │ ├── Lung_STL001.pat.gz.csi │ ├── Lung_STL002.pat.gz │ ├── Lung_STL002.pat.gz.csi │ ├── Pancreas_STL002.pat.gz │ ├── Pancreas_STL002.pat.gz.csi │ ├── Pancreas_STL003.pat.gz │ ├── Pancreas_STL003.pat.gz.csi │ ├── Sigmoid_Colon_STL001.pat.gz │ ├── Sigmoid_Colon_STL001.pat.gz.csi │ ├── Sigmoid_Colon_STL003.pat.gz │ └── Sigmoid_Colon_STL003.pat.gz.csi └── uxm /LICENSE.md: 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