├── .github ├── dependabot.yml └── workflows │ └── ci.yml ├── .gitignore ├── Cargo.toml ├── README.md ├── example ├── diff.sequence.fastq.gz ├── g2s.txt ├── library.fasta.gz ├── offset.fastq.gz ├── offset_clipped.fastq.gz ├── sequence.fastq.gz └── zero.sequence.fastq.gz └── src ├── count.rs ├── counter.rs ├── genemap.rs ├── library.rs ├── main.rs ├── offsetter.rs ├── permutes.rs ├── progress.rs ├── results.rs └── utils.rs /.github/dependabot.yml: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/noamteyssier/sgcount/HEAD/.github/dependabot.yml -------------------------------------------------------------------------------- /.github/workflows/ci.yml: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/noamteyssier/sgcount/HEAD/.github/workflows/ci.yml -------------------------------------------------------------------------------- /.gitignore: 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