├── Neighborhoods ├── Cell Type Differential Enrichment.ipynb ├── Neighborhood Identification.ipynb ├── Neighborhood Mixing.ipynb ├── Tensor Decomposition.ipynb ├── Voronoi Generation.ipynb ├── app_CRC_contacts.R ├── cca_cleaned_up.ipynb ├── tensor_decomposition_cleaned_up.ipynb └── voronoi.py ├── README.md └── paper_submission.zip /Neighborhoods/Cell Type Differential Enrichment.ipynb: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/nolanlab/NeighborhoodCoordination/HEAD/Neighborhoods/Cell Type Differential Enrichment.ipynb -------------------------------------------------------------------------------- /Neighborhoods/Neighborhood Identification.ipynb: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/nolanlab/NeighborhoodCoordination/HEAD/Neighborhoods/Neighborhood Identification.ipynb -------------------------------------------------------------------------------- /Neighborhoods/Neighborhood Mixing.ipynb: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/nolanlab/NeighborhoodCoordination/HEAD/Neighborhoods/Neighborhood Mixing.ipynb -------------------------------------------------------------------------------- /Neighborhoods/Tensor Decomposition.ipynb: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/nolanlab/NeighborhoodCoordination/HEAD/Neighborhoods/Tensor Decomposition.ipynb -------------------------------------------------------------------------------- /Neighborhoods/Voronoi Generation.ipynb: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/nolanlab/NeighborhoodCoordination/HEAD/Neighborhoods/Voronoi Generation.ipynb -------------------------------------------------------------------------------- /Neighborhoods/app_CRC_contacts.R: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/nolanlab/NeighborhoodCoordination/HEAD/Neighborhoods/app_CRC_contacts.R -------------------------------------------------------------------------------- /Neighborhoods/cca_cleaned_up.ipynb: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/nolanlab/NeighborhoodCoordination/HEAD/Neighborhoods/cca_cleaned_up.ipynb -------------------------------------------------------------------------------- /Neighborhoods/tensor_decomposition_cleaned_up.ipynb: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/nolanlab/NeighborhoodCoordination/HEAD/Neighborhoods/tensor_decomposition_cleaned_up.ipynb -------------------------------------------------------------------------------- /Neighborhoods/voronoi.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/nolanlab/NeighborhoodCoordination/HEAD/Neighborhoods/voronoi.py -------------------------------------------------------------------------------- /README.md: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/nolanlab/NeighborhoodCoordination/HEAD/README.md -------------------------------------------------------------------------------- /paper_submission.zip: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/nolanlab/NeighborhoodCoordination/HEAD/paper_submission.zip --------------------------------------------------------------------------------