├── .Rbuildignore ├── .github ├── .gitignore └── workflows │ └── R-CMD-check.yaml ├── .gitignore ├── .travis.yml ├── DESCRIPTION ├── LICENSE ├── NAMESPACE ├── R ├── Rclusterpp.hclust.R ├── Rclusterpp.package.skeleton.R ├── RclusterppLdpath.R └── inline.R ├── README.md ├── Rclusterpp.Rproj ├── cleanup ├── inst ├── WORDLIST ├── examples │ ├── benchmark.R │ ├── clustering.R │ └── memory_test.R ├── include │ ├── Rclusterpp.h │ ├── Rclusterpp │ │ ├── algorithm.h │ │ ├── cluster.h │ │ ├── hclust.h │ │ ├── method.h │ │ └── util.h │ ├── RclusterppEigenArrayPlugin.h │ ├── RclusterppEigenMatrixPlugin.h │ ├── RclusterppEigenSugar.h │ └── RclusterppForward.h ├── skeleton │ ├── Makevars.in │ ├── Makevars.win │ ├── cleanup │ ├── configure │ ├── configure.ac │ ├── rclusterpp_hello_world.R │ ├── rclusterpp_hello_world.cpp │ └── rclusterpp_hello_world.h └── unit_tests │ ├── Makefile │ ├── ambiguous.Rdata │ ├── runit.hclust.R │ └── runit.storedistance.R ├── man ├── Rclusterpp-package.Rd ├── Rclusterpp.hclust.Rd ├── Rclusterpp.linkageKinds.Rd ├── Rclusterpp.package.skeleton.Rd └── Rclusterpp.setThreads.Rd ├── src ├── Makevars ├── Makevars.win └── hclust.cpp ├── tests └── doRUnit.R └── vignettes ├── Rclusterpp.Rmd └── bibtex └── ref.bib /.Rbuildignore: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/nolanlab/Rclusterpp/HEAD/.Rbuildignore -------------------------------------------------------------------------------- /.github/.gitignore: -------------------------------------------------------------------------------- 1 | *.html 2 | -------------------------------------------------------------------------------- /.github/workflows/R-CMD-check.yaml: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/nolanlab/Rclusterpp/HEAD/.github/workflows/R-CMD-check.yaml -------------------------------------------------------------------------------- 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