├── .DS_Store ├── README.md ├── cellhier ├── general.py └── knn_graph_neighborhood.py ├── htmls ├── Figure4.html ├── Figure5 .html ├── mcmc_generating_samples.html └── mcmc_validation_analysis.html └── ipynb ├── .DS_Store ├── .ipynb_checkpoints └── cellularneighborhoods-checkpoint.ipynb ├── Figure4.ipynb ├── Figure5 .ipynb ├── Figure5-schuerch-data.ipynb ├── assembly_rules.ipynb ├── cellularneighborhoods.ipynb ├── colormc.cpp ├── mcmc_generating_samples.ipynb ├── mcmc_validation_analysis ├── spatial_contexts.ipynb └── windows_and_SCs_spotsover750cells.csv /.DS_Store: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/nolanlab/TissueSchematics/HEAD/.DS_Store -------------------------------------------------------------------------------- /README.md: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/nolanlab/TissueSchematics/HEAD/README.md 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