├── .gitignore ├── LICENSE ├── README.md ├── _populate_db ├── README.md ├── add_zvals_to_scans.py ├── make_zvals.sql ├── metadata │ ├── dups.pkl │ ├── initial_release_ids.pkl │ ├── multi-z-scans.npy │ ├── tcia_ids.pkl │ └── xml_paths.pkl ├── populate.py └── zvals_log.txt ├── pylidc ├── Annotation.py ├── Contour.py ├── Scan.py ├── Zval.py ├── _Base.py ├── __init__.py ├── annotation_distance_metrics.py ├── pylidc.sqlite └── utils.py ├── setup.cfg └── setup.py /.gitignore: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/notmatthancock/pylidc/HEAD/.gitignore -------------------------------------------------------------------------------- /LICENSE: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/notmatthancock/pylidc/HEAD/LICENSE -------------------------------------------------------------------------------- /README.md: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/notmatthancock/pylidc/HEAD/README.md -------------------------------------------------------------------------------- /_populate_db/README.md: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/notmatthancock/pylidc/HEAD/_populate_db/README.md -------------------------------------------------------------------------------- /_populate_db/add_zvals_to_scans.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/notmatthancock/pylidc/HEAD/_populate_db/add_zvals_to_scans.py -------------------------------------------------------------------------------- /_populate_db/make_zvals.sql: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/notmatthancock/pylidc/HEAD/_populate_db/make_zvals.sql -------------------------------------------------------------------------------- /_populate_db/metadata/dups.pkl: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/notmatthancock/pylidc/HEAD/_populate_db/metadata/dups.pkl -------------------------------------------------------------------------------- /_populate_db/metadata/initial_release_ids.pkl: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/notmatthancock/pylidc/HEAD/_populate_db/metadata/initial_release_ids.pkl -------------------------------------------------------------------------------- /_populate_db/metadata/multi-z-scans.npy: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/notmatthancock/pylidc/HEAD/_populate_db/metadata/multi-z-scans.npy -------------------------------------------------------------------------------- /_populate_db/metadata/tcia_ids.pkl: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/notmatthancock/pylidc/HEAD/_populate_db/metadata/tcia_ids.pkl -------------------------------------------------------------------------------- /_populate_db/metadata/xml_paths.pkl: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/notmatthancock/pylidc/HEAD/_populate_db/metadata/xml_paths.pkl -------------------------------------------------------------------------------- /_populate_db/populate.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/notmatthancock/pylidc/HEAD/_populate_db/populate.py -------------------------------------------------------------------------------- /_populate_db/zvals_log.txt: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/notmatthancock/pylidc/HEAD/_populate_db/zvals_log.txt -------------------------------------------------------------------------------- /pylidc/Annotation.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/notmatthancock/pylidc/HEAD/pylidc/Annotation.py -------------------------------------------------------------------------------- /pylidc/Contour.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/notmatthancock/pylidc/HEAD/pylidc/Contour.py -------------------------------------------------------------------------------- /pylidc/Scan.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/notmatthancock/pylidc/HEAD/pylidc/Scan.py -------------------------------------------------------------------------------- /pylidc/Zval.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/notmatthancock/pylidc/HEAD/pylidc/Zval.py -------------------------------------------------------------------------------- /pylidc/_Base.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/notmatthancock/pylidc/HEAD/pylidc/_Base.py -------------------------------------------------------------------------------- /pylidc/__init__.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/notmatthancock/pylidc/HEAD/pylidc/__init__.py -------------------------------------------------------------------------------- /pylidc/annotation_distance_metrics.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/notmatthancock/pylidc/HEAD/pylidc/annotation_distance_metrics.py -------------------------------------------------------------------------------- /pylidc/pylidc.sqlite: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/notmatthancock/pylidc/HEAD/pylidc/pylidc.sqlite -------------------------------------------------------------------------------- /pylidc/utils.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/notmatthancock/pylidc/HEAD/pylidc/utils.py -------------------------------------------------------------------------------- /setup.cfg: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/notmatthancock/pylidc/HEAD/setup.cfg -------------------------------------------------------------------------------- /setup.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/notmatthancock/pylidc/HEAD/setup.py --------------------------------------------------------------------------------