├── .gitignore ├── .project ├── AUTHORS ├── CITATION ├── CONDUCT.md ├── CONTRIBUTING.md ├── LICENSE.md ├── Makefile ├── README.md ├── _config.yml ├── _episodes ├── .gitkeep ├── 01-intro.md ├── 02-best-practices.md └── 03-checklist.md ├── _episodes_rmd ├── .gitkeep └── data │ └── .gitkeep ├── _extras ├── .gitkeep ├── about.md ├── discuss.md ├── figures.md └── guide.md ├── _includes ├── all_figures.html ├── all_keypoints.html ├── carpentries.html ├── episode_break.html ├── episode_keypoints.html ├── episode_navbar.html ├── episode_overview.html ├── episode_title.html ├── javascript.html ├── lesson_footer.html ├── main_title.html ├── navbar.html ├── syllabus.html ├── workshop_ad.html └── workshop_footer.html ├── _layouts ├── base.html ├── break.html ├── episode.html ├── lesson.html ├── page.html ├── reference.html └── workshop.html ├── assets ├── css │ ├── bootstrap-theme.css │ ├── bootstrap-theme.css.map │ ├── bootstrap.css │ ├── bootstrap.css.map │ └── lesson.scss ├── fonts │ ├── glyphicons-halflings-regular.eot │ ├── glyphicons-halflings-regular.svg │ ├── glyphicons-halflings-regular.ttf │ ├── glyphicons-halflings-regular.woff │ └── glyphicons-halflings-regular.woff2 ├── img │ ├── dc-icon-black.svg │ ├── lc-icon-black.svg │ ├── swc-icon-blue.svg │ ├── swc-logo-blue.png │ ├── swc-logo-blue.svg │ ├── swc-logo-white.png │ └── swc-logo-white.svg └── js │ ├── bootstrap.min.js │ ├── jquery.min.js │ └── lesson.js ├── bin ├── chunk-options.R ├── extract_figures.py ├── generate_md_episodes.R ├── knit_lessons.sh ├── lesson_check.py ├── lesson_initialize.py ├── markdown_ast.rb ├── repo_check.py ├── test_lesson_check.py ├── util.py └── workshop_check.py ├── code └── .gitkeep ├── data └── .gitkeep ├── favicon-dc.ico ├── favicon-lc.ico ├── favicon-swc.ico ├── fig ├── .gitkeep ├── code-review-best-practices-figure-01.gif └── code-review-best-practices-figure-02.gif ├── files └── .gitkeep ├── index.md ├── reference.md └── setup.md /.gitignore: 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