├── CHANGES ├── DESCRIPTION ├── README.md ├── code ├── epimdr2rcode.zip └── rcode ├── data ├── black.rda ├── burnett.rda ├── ccs.rda ├── chabaudi.rda ├── cholera.rda ├── cspring.rda ├── dalziel.rda ├── ebola.rda ├── euthamia.rda ├── ferrari.rda ├── filipendula.rda ├── fiv.rda ├── flu.rda ├── gm.rda ├── gonnet.rda ├── icelandflu.rda ├── litter.rda ├── m4494.rda ├── magono.rda ├── meas.rda ├── niamey.rda ├── niamey_daily.rda ├── pagiard.rda ├── paili.rda ├── palymes.rda ├── pameasle.rda ├── pdv.rda ├── pertcop.rda ├── peru.rda ├── polymod.rda ├── rabbit.rda ├── rabies.rda ├── silene.rda ├── tydiphtheria.rda ├── tymeasles.rda ├── tyscarlet.rda ├── tywhooping.rda ├── us.rda ├── usflu.rda ├── variants.rda └── waller.rda ├── epimdr2_1.0-6.tar.gz ├── epimdr2_1.0-6.zip ├── epimdr2_1.0-7.tar.gz ├── epimdr2_1.0-7.zip ├── epimdr2_1.0-8.tar.gz ├── epimdr2_1.0-8.zip ├── mov ├── cml1.gif ├── cml2.gif ├── fftrecon.gif ├── gm.gif ├── lbm.gif ├── rabies.gif └── simovie.gif └── source ├── CHANGES ├── DESCRIPTION ├── NAMESPACE ├── R ├── coyne2.R ├── data.R ├── jacobian.R ├── leslie.R ├── network.R ├── nextgenR0.R ├── rfuncs.R ├── shiny2.r ├── shiny2strain.r ├── shinyorv.r ├── shinypara.R ├── shinyross.r ├── shinyseir.R ├── shinyseirs.R ├── shinysir.R ├── sir.R ├── spatsir.R ├── tsir.R ├── twostrain.R └── twostrain.r ├── README.md ├── cran-comments.md ├── data ├── black.rda ├── burnett.rda ├── ccs.rda ├── chabaudi.rda ├── cholera.rda ├── cspring.rda ├── dalziel.rda ├── ebola.rda ├── euthamia.rda ├── ferrari.rda ├── filipendula.rda ├── fiv.rda ├── flu.rda ├── gm.rda ├── gonnet.rda ├── gra.rda ├── icelandflu.rda ├── litter.rda ├── m4494.rda ├── magono.rda ├── meas.rda ├── mossong.rda ├── niamey.rda ├── niamey_daily.rda ├── pagiard.rda ├── paili.rda ├── palymes.rda ├── pameasle.rda ├── pdv.rda ├── pertcop.rda ├── peru.rda ├── polymod.rda ├── rabbit.rda ├── rabies.rda ├── sh9.rda ├── silene.rda ├── silene2.rda ├── tydiphtheria.rda ├── tymeasles.rda ├── tyscarlet.rda ├── tywhooping.rda ├── us.rda ├── usflu.rda ├── variants.rda └── waller.rda ├── epimdr2.Rproj └── man ├── barabasiAlbert.Rd ├── black.Rd ├── burnett.Rd ├── ccs.Rd ├── chabaudi.Rd ├── chainSIR.Rd ├── cholera.Rd ├── coyne.Rd ├── coyne2.Rd ├── cspring.Rd ├── dalziel.Rd ├── ebola.Rd ├── euthamia.Rd ├── ferrari.Rd ├── filipendula.Rd ├── fiv.Rd ├── flowField.Rd ├── flu.Rd ├── gillespie.Rd ├── gonnet.Rd ├── gra.Rd ├── gravity.Rd ├── gypsymoth.Rd ├── icelandflu.Rd ├── integrandpc.Rd ├── jacobian.Rd ├── leslie.Rd ├── litter.Rd ├── llik.cb.Rd ├── llik.pc.Rd ├── m4494.Rd ├── magono.Rd ├── may.app.Rd ├── meas.Rd ├── mossong.Rd ├── nbmod.Rd ├── nbspat.app.Rd ├── networkSir.Rd ├── nextgenR0.Rd ├── niamey.Rd ├── niamey_daily.Rd ├── orv.app.Rd ├── pagiard.Rd ├── paili.Rd ├── palymes.Rd ├── pameasle.Rd ├── pdv.Rd ├── pertcop.Rd ├── peru.Rd ├── plot.cm.Rd ├── plot.netSir.Rd ├── polymod.Rd ├── r0fun.Rd ├── rabbit.Rd ├── rabies.Rd ├── retrospec.Rd ├── ringlattice.Rd ├── ross.app.Rd ├── seir.app.Rd ├── seirmod.Rd ├── seirmod2.Rd ├── seirs.app.Rd ├── sh9.Rd ├── silene.Rd ├── silene2.Rd ├── sim.cb.Rd ├── simTsir.Rd ├── simTsir2.Rd ├── sir.app.Rd ├── sirAgemod.Rd ├── sirChainmod.Rd ├── sirNetmod.Rd ├── sirSpatmod.Rd ├── siragemod.Rd ├── sirmod.Rd ├── sirvmod.Rd ├── sirwmod.Rd ├── sivmod.Rd ├── spatTsir.Rd ├── summary.cm.Rd ├── summary.netSir.Rd ├── tau.Rd ├── tsir.app.Rd ├── tsirLlyap.Rd ├── tsirLyap.Rd ├── tsirSim.Rd ├── tsirSim2.Rd ├── tsirSpat.Rd ├── twostrain.Rd ├── twostrain.app.Rd ├── tydiphtheria.Rd ├── tymeasles.Rd ├── tyscarlet.Rd ├── tywhooping.Rd ├── us.Rd ├── usflu.Rd ├── variants.Rd ├── waller.Rd └── wattsStrogatz.Rd /CHANGES: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/objornstad/epimdr2/HEAD/CHANGES -------------------------------------------------------------------------------- /DESCRIPTION: -------------------------------------------------------------------------------- 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