├── .classpath ├── .gitignore ├── .project ├── .settings ├── org.eclipse.core.resources.prefs ├── org.eclipse.jdt.core.prefs ├── org.eclipse.jdt.ui.prefs └── org.eclipse.m2e.core.prefs ├── .travis.yml ├── README ├── bin ├── .gitignore ├── obolib-basic.bat ├── obolib-obo2owl ├── obolib-obo2owl.bat ├── obolib-owl2obo └── obolib-owl2obo.bat ├── pom.xml └── src ├── main ├── java │ └── org │ │ └── obolibrary │ │ ├── cli │ │ ├── OBODiffRunner.java │ │ ├── OBORunner.java │ │ ├── OBORunnerConfigCLIReader.java │ │ ├── OBORunnerConfiguration.java │ │ └── OBORunnerGui.java │ │ ├── examples │ │ └── ExportLabelsAsOWL.java │ │ ├── gui │ │ ├── GuiAdvancedDirectionSpecificPanel.java │ │ ├── GuiAdvancedPanel.java │ │ ├── GuiLogPanel.java │ │ ├── GuiMainFrame.java │ │ ├── GuiMainPanel.java │ │ ├── GuiTools.java │ │ └── SelectDialog.java │ │ ├── obo2owl │ │ ├── Obo2Owl.java │ │ └── Owl2Obo.java │ │ └── owl │ │ └── LabelFunctionalSyntaxStorerFactory.java └── resources │ └── log4j.properties └── test ├── java └── org │ └── obolibrary │ ├── cli │ └── OBORunnerConfigCLIReaderTest.java │ ├── macro │ └── HomeomorphicRelationTest.java │ ├── obo2owl │ ├── AllProductionTests.java │ ├── CHEBITest.java │ ├── FlyXPTest.java │ ├── ImportOWLOntologiesFromOboTest.java │ ├── OboFormatTestBasics.java │ ├── Owl2OboAnnotationPropertyTest.java │ ├── RoundTripCLTest.java │ ├── RoundTripFlyAnatomyTest.java │ ├── RoundTripImportTest.java │ ├── RoundTripOBITest.java │ ├── RoundTripPROTest.java │ ├── RoundTripRelationshipVsProperty.java │ ├── RoundTripSynonymtypedefTest.java │ ├── RoundTripTest.java │ ├── RoundTripUberonTest.java │ └── SBOTest.java │ ├── oboformat │ └── GOTest.java │ └── owl │ └── WriteLabels.java └── resources ├── .pl-history ├── SBO_OBO.obo ├── homrel.obo ├── import_test_imported.owl ├── import_test_main.obo ├── labeled_xrefs.obo ├── obi.owl ├── relationship_vs_property.obo ├── subAnnotProp.owl └── xrefIRItest.owl /.classpath: 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