├── README.md ├── data ├── eigenworm.npy ├── shapes.csv └── symbolic_dynamics.npy ├── demonstration ├── F0027.png ├── O0027.jpg ├── Stephens2008_Fig1mod.jpg ├── data.csv └── video_maggots.mp4 ├── fig ├── img_measurement_matrix.png ├── img_trajectory_matrix.png ├── img_umap_celegans_costa.png ├── vid_Takens_thm_Sugihara.mp4 ├── vid_intro_state_space_Sugihara.mp4 ├── worm_chain.jpg ├── worm_eigenvector.jpg ├── worm_state-space.jpg └── worm_state_space.png ├── iframe_figures ├── figure_10.html ├── figure_4.html └── figure_8.html ├── lib ├── __pycache__ │ ├── operator_calculations.cpython-37.pyc │ ├── operator_calculations.cpython-38.pyc │ ├── operator_calculations.cpython-39.pyc │ └── stats.cpython-37.pyc ├── clustering_methods.py ├── delay_embedding_1D.py ├── operator_calculations.py └── stats.py ├── requirements.yml ├── tutorial1_eigenshapes.ipynb ├── tutorial2_statespace.ipynb └── tutorial3_markovchain.ipynb /README.md: 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