├── Omidvarnia_et_al_2024 ├── analysis_steps │ ├── Step10_submit_ConfoundsOnly_prediction_jobs_to_HTCondor.sh │ ├── Step11_plot_prediction_accuracies_allThreshs.py │ ├── Step11_plot_prediction_accuracies_thr0.py │ ├── Step11_plot_prediction_accuracies_thr0_boxplot.py │ ├── Step12_fingerprinting_analysis.py │ ├── Step13_create_job_files_for_HTCondor.py │ ├── Step14_submit_identification_jobs.sh │ ├── Step15_plot_identification_accuracies.py │ ├── Step1_set_initial_folders.py │ ├── Step2_create_job_files_for_HTCondor.py │ ├── Step3_submit_jobs_to_HTCondor.sh │ ├── Step4_obtain_distributions.py │ ├── Step5_preform_prediction_juseless_tsnr0.py │ ├── Step5_preform_prediction_juseless_tsnrAll.py │ ├── Step6_create_job_files_for_HTCondor.py │ ├── Step7_submit_prediction_jobs_to_HTCondor.sh │ ├── Step8_perform_prediction_ConfoundsOnly_juseless.py │ └── Step9_create_job_files_for_HTCondor.py ├── common │ ├── LinearSVHeuristicC.py │ ├── complexity.py │ ├── config_HCP_icbm152_mask.yaml │ ├── feature_extraction.py │ ├── htcondor_submit_file_generation.py │ └── vec2nii.py ├── data │ ├── MNI_Glasser_HCP_v1.0.nii.gz │ ├── Mean_tSNR_map_glasser.nii.gz │ ├── Mean_tSNR_map_schaefer.nii.gz │ └── subs_with_filtered_func_data_clean_and_movement_and_warp_data_261121.mat ├── executables │ └── fmri_feature_extraction_executable.py ├── explore │ ├── Step1B_check_tsnr_and_nroi_relationship.py │ ├── Step1_check_tsnr_and_nroi_relationship.py │ ├── Step2_check_tsnr_and_nroi_create_job_files.py │ ├── Step3_check_tsnr_and_nroi_submit_job_files.sh │ ├── Step4_plot_auuracy_vs_tsnr_N20k.py │ ├── Step5_plot_acuracy_vs_nroi_N20k.py │ ├── check_alpha_parameters.py │ └── plot_mean_tSNR_nifti.py └── readme.md ├── Omidvarnia_et_al_Neuroimage2021 ├── Behavioural_analysis.m ├── Complexity_FC_analysis.m ├── Effect_size_analysis.m ├── Extract_MSE_of_Motion.m ├── Extract_MSE_of_fMRI.m ├── FDCalc.m ├── HCP-MMP1_onMNI152_2mm_Glasser360.nii ├── HCP_behav_vars_936_by_50_v2.mat ├── IPN_icc.m ├── Read_me.txt ├── Sina_Glasser_map.csv ├── Sina_match_Yeo.mat ├── Test_retest_analysis.m ├── cGSP_FC_fMRI.m ├── cGSP_MSE_fMRI.m ├── effect_size_measures.m ├── fdr_bh.m ├── list_of_behavioural_variables.txt └── pvpmod.m ├── Pedersen_et_al_BioRxiv2018 ├── Pedersen_2018_HCP_network_anaysis_script_with_switching_dynamics_and_entropy.m ├── Pedersen_2018_HCP_network_anaysis_script_with_switching_dynamics_and_entropy_v2.m ├── dynamic_connectivity_N100.nii ├── dynamic_connectivity_N25.nii ├── dynamic_connectivity_N50.nii ├── switching_N100.nii ├── switching_N25.nii └── switching_N50.nii ├── Pedersen_et_al_Neuroimage2018 └── IPSA.m ├── README.md ├── Single_subject_MRI ├── Thresholding_FDR.m ├── Thresholding_RFT.m ├── readme.txt ├── subject_level_MRI_stats.fig ├── subject_level_MRI_stats.m ├── subject_level_MRI_stats_run.m ├── subject_level_MRI_stats_run_par.m ├── w_ReadDF.m ├── y_IdealFilter.m ├── y_Read.m ├── y_ReadRPI.m ├── y_Smoothest.m ├── y_Write.m ├── y_rdir.m └── y_reho.m └── participation_coef_norm.m 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