├── .gitignore ├── FUSION.assoc_test.edit.R ├── FUSION.post_process.edit.R ├── LICENSE ├── README.md ├── compute_weights.R ├── env.yaml ├── fusion_pseudoval.R ├── ldak_pseudoval.R ├── rmd ├── eqtlgen_metabrain_twas.Rmd ├── generate_eQTLGen_model_for_sharing.Rmd └── methods_comparison.Rmd └── sim_TWAS.R /.gitignore: -------------------------------------------------------------------------------- 1 | private/ 2 | -------------------------------------------------------------------------------- /FUSION.assoc_test.edit.R: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/opain/eQTL_to_TWAS/HEAD/FUSION.assoc_test.edit.R -------------------------------------------------------------------------------- /FUSION.post_process.edit.R: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/opain/eQTL_to_TWAS/HEAD/FUSION.post_process.edit.R -------------------------------------------------------------------------------- /LICENSE: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/opain/eQTL_to_TWAS/HEAD/LICENSE -------------------------------------------------------------------------------- /README.md: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/opain/eQTL_to_TWAS/HEAD/README.md -------------------------------------------------------------------------------- /compute_weights.R: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/opain/eQTL_to_TWAS/HEAD/compute_weights.R -------------------------------------------------------------------------------- /env.yaml: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/opain/eQTL_to_TWAS/HEAD/env.yaml -------------------------------------------------------------------------------- /fusion_pseudoval.R: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/opain/eQTL_to_TWAS/HEAD/fusion_pseudoval.R -------------------------------------------------------------------------------- /ldak_pseudoval.R: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/opain/eQTL_to_TWAS/HEAD/ldak_pseudoval.R -------------------------------------------------------------------------------- /rmd/eqtlgen_metabrain_twas.Rmd: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/opain/eQTL_to_TWAS/HEAD/rmd/eqtlgen_metabrain_twas.Rmd -------------------------------------------------------------------------------- /rmd/generate_eQTLGen_model_for_sharing.Rmd: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/opain/eQTL_to_TWAS/HEAD/rmd/generate_eQTLGen_model_for_sharing.Rmd -------------------------------------------------------------------------------- /rmd/methods_comparison.Rmd: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/opain/eQTL_to_TWAS/HEAD/rmd/methods_comparison.Rmd -------------------------------------------------------------------------------- /sim_TWAS.R: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/opain/eQTL_to_TWAS/HEAD/sim_TWAS.R --------------------------------------------------------------------------------