├── .github ├── FUNDING.yml └── workflows │ └── tests.yml ├── .gitignore ├── .pryrc ├── .readthedocs.yaml ├── .rspec ├── .ruby-gemset ├── .ruby-version ├── Aptfile ├── CODE_OF_CONDUCT.md ├── COI.md ├── Gemfile ├── Gemfile.lock ├── LICENSE ├── Procfile ├── README.md ├── ROADMAP.md ├── Rakefile ├── app ├── assets │ ├── config │ │ └── manifest.js │ ├── images │ │ ├── .keep │ │ ├── ORCIDiD_iconvector.svg │ │ ├── RSS.svg │ │ ├── cc-logo.svg │ │ ├── cc.svg │ │ ├── dl-icon.svg │ │ ├── doi.svg │ │ ├── editors │ │ │ ├── abby.jpg │ │ │ ├── alex.jpg │ │ │ ├── arfon.jpg │ │ │ ├── ariel.jpg │ │ │ ├── bruce.jpg │ │ │ ├── chris.png │ │ │ ├── csoneson.jpg │ │ │ ├── dan.png │ │ │ ├── elizabeth.jpg │ │ │ ├── george.jpg │ │ │ ├── georget.jpg │ │ │ ├── jack.jpg │ │ │ ├── jake.jpg │ │ │ ├── jason.jpg │ │ │ ├── jed.jpg │ │ │ ├── jj.png │ │ │ ├── karthik.png │ │ │ ├── katy.png │ │ │ ├── kevin.png │ │ │ ├── kristen.jpg │ │ │ ├── kyle.jpg │ │ │ ├── leonardo.jpg │ │ │ ├── lindsey.png │ │ │ ├── lorena.png │ │ │ ├── lorenap.jpg │ │ │ ├── marie.jpg │ │ │ ├── mbobra.jpg │ │ │ ├── melissa.png │ │ │ ├── pjotr.jpg │ │ │ ├── roman.jpg │ │ │ ├── tania.jpg │ │ │ ├── thomas.jpg │ │ │ ├── tracy.jpg │ │ │ ├── viviane.jpg │ │ │ └── yo.jpg │ │ ├── gh-icon.svg │ │ ├── github.svg │ │ ├── hist-icon.svg │ │ ├── icon_arrowright.svg │ │ ├── icon_docs.svg │ │ ├── icon_github.svg │ │ ├── icon_info.svg │ │ ├── icon_info_dark.svg │ │ ├── icon_papers.svg │ │ ├── joss.svg │ │ ├── logo_medium.png │ │ ├── logo_small.png │ │ ├── logo_type.svg │ │ ├── numfocus.png │ │ ├── osi.png │ │ ├── osi_small.png │ │ ├── osi_standard_logo.png │ │ ├── papers-wht.svg │ │ ├── placeholder-thing.jpg │ │ ├── rss-sm.svg │ │ └── temp │ │ │ └── avatar.jpg │ └── stylesheets │ │ ├── _animations.scss │ │ ├── application.scss │ │ ├── bootstrap-4.3.1 │ │ ├── _alert.scss │ │ ├── _badge.scss │ │ ├── _breadcrumb.scss │ │ ├── _button-group.scss │ │ ├── _buttons.scss │ │ ├── _card.scss │ │ ├── _carousel.scss │ │ ├── _close.scss │ │ ├── _code.scss │ │ ├── _custom-forms.scss │ │ ├── _dropdown.scss │ │ ├── _forms.scss │ │ ├── _functions.scss │ │ ├── _grid.scss │ │ ├── _images.scss │ │ ├── _input-group.scss │ │ ├── _jumbotron.scss │ │ ├── _list-group.scss │ │ ├── _media.scss │ │ ├── _mixins.scss │ │ ├── _modal.scss │ │ ├── _nav.scss │ │ ├── _navbar.scss │ │ ├── _pagination.scss │ │ ├── _popover.scss │ │ ├── _print.scss │ │ ├── _progress.scss │ │ ├── _reboot.scss │ │ ├── _root.scss │ │ ├── _spinners.scss │ │ ├── _tables.scss │ │ ├── _toasts.scss │ │ ├── _tooltip.scss │ │ ├── _transitions.scss │ │ ├── _type.scss │ │ ├── _utilities.scss │ │ ├── _variables.scss │ │ ├── bootstrap-grid.scss │ │ ├── bootstrap-reboot.scss │ │ ├── bootstrap.scss │ │ ├── mixins │ │ │ ├── _alert.scss │ │ │ ├── _background-variant.scss │ │ │ ├── _badge.scss │ │ │ ├── _border-radius.scss │ │ │ ├── _box-shadow.scss │ │ │ ├── _breakpoints.scss │ │ │ ├── _buttons.scss │ │ │ ├── _caret.scss │ │ │ ├── _clearfix.scss │ │ │ ├── _deprecate.scss │ │ │ ├── _float.scss │ │ │ ├── _forms.scss │ │ │ ├── _gradients.scss │ │ │ ├── _grid-framework.scss │ │ │ ├── _grid.scss │ │ │ ├── _hover.scss │ │ │ ├── _image.scss │ │ │ ├── _list-group.scss │ │ │ ├── _lists.scss │ │ │ ├── _nav-divider.scss │ │ │ ├── _pagination.scss │ │ │ ├── _reset-text.scss │ │ │ ├── _resize.scss │ │ │ ├── _screen-reader.scss │ │ │ ├── _size.scss │ │ │ ├── _table-row.scss │ │ │ ├── _text-emphasis.scss │ │ │ ├── _text-hide.scss │ │ │ ├── _text-truncate.scss │ │ │ ├── _transition.scss │ │ │ └── _visibility.scss │ │ ├── utilities │ │ │ ├── _align.scss │ │ │ ├── _background.scss │ │ │ ├── _borders.scss │ │ │ ├── _clearfix.scss │ │ │ ├── _display.scss │ │ │ ├── _embed.scss │ │ │ ├── _flex.scss │ │ │ ├── _float.scss │ │ │ ├── _overflow.scss │ │ │ ├── _position.scss │ │ │ ├── _screenreaders.scss │ │ │ ├── _shadows.scss │ │ │ ├── _sizing.scss │ │ │ ├── _spacing.scss │ │ │ ├── _stretched-link.scss │ │ │ ├── _text.scss │ │ │ └── _visibility.scss │ │ └── vendor │ │ │ └── _rfs.scss │ │ ├── editors.scss │ │ ├── fonts.scss │ │ ├── home.scss │ │ ├── papers.scss │ │ └── sessions.scss ├── controllers │ ├── aeic_dashboard_controller.rb │ ├── application_controller.rb │ ├── badges_controller.rb │ ├── concerns │ │ └── .keep │ ├── dispatch_controller.rb │ ├── editors_controller.rb │ ├── home_controller.rb │ ├── invitations_controller.rb │ ├── notes_controller.rb │ ├── onboardings_controller.rb │ ├── papers_controller.rb │ ├── sessions_controller.rb │ ├── subjects_controller.rb │ ├── toc_controller.rb │ ├── tracks_controller.rb │ └── votes_controller.rb ├── helpers │ ├── application_helper.rb │ ├── dispatch_helper.rb │ ├── editors_helper.rb │ ├── home_helper.rb │ ├── invitations_helper.rb │ ├── pagination_helper.rb │ ├── papers_helper.rb │ └── sessions_helper.rb ├── javascript │ ├── application.js │ ├── controllers │ │ ├── application.js │ │ └── index.js │ └── custom │ │ ├── clipboards.js │ │ ├── editors.js │ │ ├── home.js │ │ ├── loading_jquery.js │ │ ├── papers.js │ │ ├── sortable.js │ │ └── transitions.js ├── mailers │ ├── .keep │ ├── application_mailer.rb │ └── notifications.rb ├── models │ ├── .keep │ ├── application_record.rb │ ├── concerns │ │ └── .keep │ ├── editor.rb │ ├── invitation.rb │ ├── note.rb │ ├── onboarding_invitation.rb │ ├── paper.rb │ ├── review_issue.rb │ ├── subject.rb │ ├── track.rb │ ├── track_aeic.rb │ ├── user.rb │ └── vote.rb └── views │ ├── aeic_dashboard │ ├── _menu.html.erb │ └── index.html.erb │ ├── badges │ └── badge.svg.erb │ ├── content │ ├── about │ │ ├── _general.html.erb │ │ └── _partnerships.html.erb │ └── layout │ │ ├── _footer.html.erb │ │ └── _navbar.html.erb │ ├── editors │ ├── _form.html.erb │ ├── edit.html.erb │ ├── index.html.erb │ ├── new.html.erb │ ├── profile.html.erb │ └── show.html.erb │ ├── home │ ├── _menu.html.erb │ ├── _profiles_menu.html.erb │ ├── about.html.erb │ ├── dashboard.html.erb │ ├── index.html.erb │ ├── profile.html.erb │ └── reviews.html.erb │ ├── invitations │ └── index.html.erb │ ├── layouts │ ├── application.html.erb │ ├── mailer.html.erb │ └── mailer.text.erb │ ├── notifications │ ├── author_submission_email.html.erb │ ├── author_submission_email.text.erb │ ├── editor_invite_email.html.erb │ ├── editor_invite_email.text.erb │ ├── editor_scope_email.html.erb │ ├── editor_scope_email.text.erb │ ├── editor_weekly_email.html.erb │ ├── editor_weekly_email.text.erb │ ├── notify_new_aeic.html.erb │ ├── notify_new_aeic.text.erb │ ├── onboarding_invitation_email.html.erb │ ├── onboarding_invitation_email.text.erb │ ├── submission_email.html.erb │ └── submission_email.text.erb │ ├── onboardings │ ├── editor.html.erb │ └── index.html.erb │ ├── papers │ ├── _actions.html.erb │ ├── _badge.html.erb │ ├── _bibtex.html.erb │ ├── _eic_summary.html.erb │ ├── _form.html.erb │ ├── _list.html.erb │ ├── _meta.html.erb │ ├── _notes.html.erb │ ├── _show_published.html.erb │ ├── _show_unpublished.html.erb │ ├── _sidebar_published.html.erb │ ├── _status.html.erb │ ├── _vote_summary.html.erb │ ├── index.atom.builder │ ├── index.html.erb │ ├── index.json.jbuilder │ ├── new.html.erb │ ├── show.html.erb │ ├── show.json.jbuilder │ └── status.html.erb │ ├── shared │ ├── _editor.html.erb │ ├── _errors.html.erb │ ├── _flashes.html.erb │ ├── _profile.html.erb │ ├── _retraction_info.html.erb │ ├── meta_view_body.text.erb │ └── review_body.text.erb │ ├── subjects │ └── search.html.erb │ ├── toc │ ├── _list.html.erb │ ├── current_issue.html.erb │ ├── index.html.erb │ ├── issue.html.erb │ ├── volume.html.erb │ └── year.html.erb │ └── tracks │ ├── _form.html.erb │ ├── edit.html.erb │ ├── index.html.erb │ ├── new.html.erb │ ├── remove.html.erb │ └── show.html.erb ├── bin ├── bundle ├── importmap ├── rails ├── rake ├── rspec └── setup ├── config.ru ├── config ├── application.rb ├── boot.rb ├── cable.yml ├── database.yml ├── environment.rb ├── environments │ ├── development.rb │ ├── production.rb │ └── test.rb ├── importmap.rb ├── initializers │ ├── application_controller_renderer.rb │ ├── assets.rb │ ├── backtrace_silencers.rb │ ├── console.rb │ ├── constants.rb │ ├── content_security_policy.rb │ ├── cookies_serializer.rb │ ├── env.rb │ ├── filter_parameter_logging.rb │ ├── inflections.rb │ ├── mime_types.rb │ ├── octokit.rb │ ├── omniauth.rb │ ├── pagy.rb │ ├── permissions_policy.rb │ ├── session_store.rb │ └── wrap_parameters.rb ├── locales │ └── en.yml ├── orcid.yml ├── puma.rb ├── repository.yml ├── routes.rb ├── secrets.yml ├── settings-development.yml ├── settings-production.yml ├── settings-test.yml ├── spring.rb └── storage.yml ├── db ├── migrate │ ├── 20160126012007_setup_hstore.rb │ ├── 20160126012626_create_users.rb │ ├── 20160127035358_create_papers.rb │ ├── 20160127165129_add_paper_and_user_indexes.rb │ ├── 20160215235526_add_review_issue_to_paper.rb │ ├── 20160228024951_add_gh_user_to_user.rb │ ├── 20160424042344_add_software_version_to_paper.rb │ ├── 20160511024114_add_doi_to_paper.rb │ ├── 20160512023304_add_accepted_body_to_paper.rb │ ├── 20160918002623_add_meta_review_issue_id_to_paper.rb │ ├── 20170402113433_add_suggested_editor_to_paper.rb │ ├── 20171104191755_create_editors.rb │ ├── 20171107021538_add_kind_to_papers.rb │ ├── 20171202233444_add_paper_metadata.rb │ ├── 20180816192335_add_editor_id_to_paper.rb │ ├── 20180820150654_add_paper_indexes.rb │ ├── 20180929182512_add_dashboard_fields.rb │ ├── 20181213123534_add_last_active_at_to_papers.rb │ ├── 20190511114410_add_labels_to_paper.rb │ ├── 20190802131034_add_metadata_to_paper.rb │ ├── 20190817111418_add_retraction_notice_to_paper.rb │ ├── 20190928003647_add_archived_to_paper.rb │ ├── 20200206205751_add_managing_editor_to_paper.rb │ ├── 20200306231512_add_submission_kind_to_paper.rb │ ├── 20200521184901_add_availability_to_editor.rb │ ├── 20200630105443_create_votes.rb │ ├── 20210214162210_add_percent_complete_to_paper.rb │ ├── 20210222114454_add_availability_comment_to_editors.rb │ ├── 20210317094834_change_availability_to_max_assignments.rb │ ├── 20210325114224_create_invitations.rb │ ├── 20210505104138_add_state_to_invitations.rb │ ├── 20210511103312_create_notes.rb │ ├── 20210607093405_create_onboarding_invitations.rb │ ├── 20210615091027_add_accepted_at_and_invited_to_team_at_to_onboarding_invitations.rb │ ├── 20210615101009_add_editor_id_to_onboarding_invitations.rb │ ├── 20210706101511_change_default_paper_count.rb │ ├── 20211004085341_remove_percent_complete_from_papers.rb │ ├── 20220304092320_add_git_branch_to_papers.rb │ ├── 20220510091023_create_tracks.rb │ ├── 20220511095533_create_track_aeics.rb │ ├── 20220512081922_create_subjects.rb │ ├── 20220512083929_add_indexes.rb │ ├── 20220607095358_remove_suggested_editor_from_papers.rb │ ├── 20220616085520_add_suggested_subject_to_papers.rb │ ├── 20230609104144_add_retraction_for_id_to_papers.rb │ ├── 20240109210521_add_start_date_to_editors.rb │ ├── 20241008130937_add_service_name_to_active_storage_blobs.active_storage.rb │ ├── 20241008130938_create_active_storage_variant_records.active_storage.rb │ └── 20241008130939_remove_not_null_on_active_storage_blobs_checksum.active_storage.rb ├── schema.rb └── seeds.rb ├── docs ├── Makefile ├── _static │ └── css │ │ └── joss.css ├── conf.py ├── editing.md ├── editor_onboarding.md ├── editor_tips.md ├── editorial_bot.md ├── example_paper.md ├── expectations.md ├── images │ ├── JOSS-flowchart.png │ └── sponsors.png ├── index.rst ├── installing.md ├── logos │ ├── joss-logo-web.png │ ├── joss-logo.png │ ├── joss-wordmark-web.png │ └── joss-wordmark.png ├── paper.md ├── policies.md ├── requirements.txt ├── review_checklist.md ├── review_criteria.md ├── reviewer_guidelines.md ├── sample_messages.md └── submitting.md ├── lib ├── assets │ └── .keep ├── journal_features.rb ├── repository.rb ├── settings_helper.rb ├── tasks │ ├── .keep │ ├── editorials.rake │ ├── migration.rake │ ├── permissions.rake │ ├── portico.rake │ ├── stats.rake │ ├── sync.rake │ ├── tracks.rake │ └── utils.rake ├── tracks.yml └── util │ └── console_extensions.rb ├── log └── .keep ├── public ├── 404.html ├── 406-unsupported-browser.html ├── 422.html ├── 500.html ├── android-icon-144x144.png ├── android-icon-192x192.png ├── android-icon-36x36.png ├── android-icon-48x48.png ├── android-icon-72x72.png ├── android-icon-96x96.png ├── apple-icon-114x114.png ├── apple-icon-120x120.png ├── apple-icon-144x144.png ├── apple-icon-152x152.png ├── apple-icon-180x180.png ├── apple-icon-57x57.png ├── apple-icon-60x60.png ├── apple-icon-72x72.png ├── apple-icon-76x76.png ├── apple-icon-precomposed.png ├── apple-icon.png ├── browserconfig.xml ├── favicon-16x16.png ├── favicon-32x32.png ├── favicon-96x96.png ├── favicon.ico ├── icon.png ├── icon.svg ├── logo_large.jpg ├── logo_large.png ├── manifest.json ├── ms-icon-144x144.png ├── ms-icon-150x150.png ├── ms-icon-310x310.png ├── ms-icon-70x70.png └── robots.txt ├── spec ├── controllers │ ├── aeic_dashboard_controller_spec.rb │ ├── dispatch_controller_spec.rb │ ├── editors_controller_spec.rb │ ├── home_controller_spec.rb │ ├── papers_controller_spec.rb │ ├── subjects_controller_spec.rb │ └── votes_controller_spec.rb ├── factories │ ├── editors.rb │ ├── invitations.rb │ ├── notes.rb │ ├── onboarding_invitations.rb │ ├── papers_factory.rb │ ├── subjects.rb │ ├── tracks.rb │ ├── users_factory.rb │ └── votes_factory.rb ├── fixtures │ ├── cassettes │ │ └── DispatchController │ │ │ └── POST_github_receiver_for_REVIEW │ │ │ ├── should_update_the_last_activity_field.yml │ │ │ ├── should_update_the_last_edits_key.yml │ │ │ └── should_update_the_percent_complete_value.yml │ ├── editor-pre-review-comment.json │ ├── editor-review-comment.json │ ├── editorialbot-pre-review-comment-random-review.json │ ├── editorialbot-pre-review-comment.json │ ├── editorialbot-pre-review-opened.json │ ├── editorialbot-review-comment.json │ ├── editorialbot-review-edit.json │ ├── editorialbot-review-labeled.json │ ├── editorialbot-review-opened.json │ ├── paper.pdf │ ├── reference-tracks.yml │ └── review-body-79.json ├── helpers │ └── editors_helper_spec.rb ├── lib │ ├── repository_spec.rb │ └── tracks_spec.rb ├── mailers │ ├── notifications_spec.rb │ └── previews │ │ └── notifications_preview.rb ├── models │ ├── editor_spec.rb │ ├── invitation_spec.rb │ ├── onboarding_invitation_spec.rb │ ├── paper_spec.rb │ ├── subject_spec.rb │ ├── track_aeic_spec.rb │ ├── track_spec.rb │ ├── user_spec.rb │ └── vote_spec.rb ├── rails_helper.rb ├── routing │ └── editors_routing_spec.rb ├── spec_helper.rb ├── support │ └── common_actions.rb ├── system │ ├── dashboard_spec.rb │ ├── editors │ │ ├── management_spec.rb │ │ └── profile_spec.rb │ ├── invitations_spec.rb │ ├── notes_spec.rb │ ├── onboarding_spec.rb │ ├── papers │ │ ├── search_papers_spec.rb │ │ ├── show_published_spec.rb │ │ └── track_info_spec.rb │ ├── toc_spec.rb │ └── tracks_spec.rb └── views │ ├── editors │ ├── edit.html.erb_spec.rb │ ├── 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