├── CElegans ├── Readme.txt ├── behavior │ ├── Readme.txt │ ├── bin │ │ └── glut32.dll │ ├── include │ │ ├── EasyGL.h │ │ ├── Font.h │ │ ├── GLee.h │ │ ├── GenUtils.h │ │ ├── MathUtils.h │ │ ├── TextureUtils.h │ │ ├── XMLUtils.h │ │ └── win32 │ │ │ └── GL │ │ │ └── glut.h │ ├── lib │ │ ├── glut32.lib │ │ ├── libglpng.a │ │ ├── libsxmlgui.a │ │ ├── sxmlgui.lib │ │ └── sxmlguid.lib │ ├── resource │ │ ├── ArialSmall.tga │ │ ├── GUIElements.PNG │ │ └── GUILayout.xml │ └── src │ │ ├── CElegansBehavior.cpp │ │ ├── CElegansBehavior.sln │ │ ├── CElegansBehavior.vcxproj │ │ ├── CElegansBehavior.vcxproj.filters │ │ └── makefile ├── connectome │ ├── Readme.txt │ ├── bin │ │ ├── build.bat │ │ ├── build.sh │ │ ├── run.bat │ │ ├── run.sh │ │ └── run2.sh │ ├── data │ │ └── CElegansNeuronTables.xls │ ├── lib │ │ └── jxl.jar │ └── src │ │ ├── CElegansBionet.java │ │ ├── ConnectomeRow.java │ │ ├── ConnectomeTables.java │ │ └── manifest.mf ├── initNeuronSimHocFile │ ├── Readme.txt │ ├── bin │ │ └── CElegans.hoc │ └── src │ │ ├── initNeuronSimHocFile.cpp │ │ ├── initNeuronSimHocFile.sln │ │ ├── initNeuronSimHocFile.vcxproj │ │ ├── initNeuronSimHocFile.vcxproj.filters │ │ └── makefile ├── undulationFFT │ ├── Readme.txt │ ├── bin │ │ └── libfftw3-3.dll │ └── src │ │ ├── makefile │ │ ├── undulationFFT.cpp │ │ ├── undulationFFT.sln │ │ ├── undulationFFT.vcxproj │ │ └── undulationFFT.vcxproj.filters └── wrigglenet │ ├── Readme.txt │ ├── bin │ ├── pthreadVC2.dll │ ├── wrigglenetResume.sh │ └── wrigglenetRun.sh │ └── src │ ├── evolveWriggle.cpp │ ├── evolveWriggle.hpp │ ├── makefile │ ├── wriggle.cpp │ ├── wriggle.hpp │ ├── wrigglenet.cpp │ ├── wrigglenet.sln │ ├── wrigglenet.vcxproj │ └── wrigglenet.vcxproj.filters ├── LICENSE ├── README.md ├── bin ├── CElegans_behaviors.txt ├── CElegans_network.txt ├── createBehaviors.bat ├── createBehaviors.sh ├── createCElegansBehaviors.sh ├── createCElegansHomomorphicC302simNetworks.job ├── createCElegansHomomorphicC302simNetworks.sh ├── createCElegansHomomorphicC302simNetworksResume.sh ├── createCElegansHomomorphicNEURONsimNetworks.job ├── createCElegansHomomorphicNEURONsimNetworks.sh ├── createCElegansHomomorphicNEURONsimNetworksResume.sh ├── createCElegansHomomorphicNetworks.bat ├── createCElegansHomomorphicNetworks.job ├── createCElegansHomomorphicNetworks.sh ├── createCElegansHomomorphicNetworksResume.sh ├── createCElegansHomomorphicUndulationNetworks.job ├── createCElegansHomomorphicUndulationNetworks.sh ├── createCElegansHomomorphicUndulationNetworksResume.sh ├── createHomomorphicNetworks.bat ├── createHomomorphicNetworks.sh ├── createIsomorphicNetworks.bat ├── createIsomorphicNetworks.sh ├── createNetwork.bat ├── createNetwork.sh ├── libfftw3-3.dll └── pthreadVC2.dll ├── include └── win32 │ ├── pthread.h │ ├── sched.h │ └── semaphore.h ├── lib └── win32 │ └── pthreadVC2.lib ├── sim └── neuron │ ├── Readme.txt │ └── model │ ├── Acetylcholine.mod │ ├── CElegans.hoc │ ├── CellPositions.dat │ ├── 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