├── .clang-format ├── .github └── workflows │ └── build-and-test.yml ├── .gitignore ├── CMakeLists.txt ├── LICENSE ├── ReadMe.md ├── cmake └── Functions.cmake ├── docs ├── Makefile ├── README.md ├── make.bat ├── requirements.txt └── source │ ├── concepts │ ├── adiosobjects.rst │ ├── anatomy.rst │ ├── deferredvssync.rst │ ├── mpmd.rst │ └── streamvsfile.rst │ ├── conf.py │ ├── fortran │ ├── fortran.rst │ └── variables.rst │ ├── image │ ├── global_array.png │ ├── global_array_changing_blocksizes.png │ ├── global_array_changing_shape.png │ ├── global_array_multiblock.png │ ├── global_array_overlap.png │ ├── global_array_read_pattern.png │ └── global_array_sparse.png │ ├── index.rst │ ├── introduction │ ├── introduction.rst │ └── manualbuild.rst │ ├── performance │ └── aggregation.rst │ └── variables │ ├── globalarray.rst │ └── introduction.rst ├── make.settings ├── meson.build ├── meson_options.txt ├── scripts ├── ci │ └── user-setup.sh ├── conda │ ├── LICENSE │ ├── build.sh │ └── meta.yaml └── developer │ └── setup.sh └── source ├── CMakeLists.txt ├── c ├── CMakeLists.txt ├── hello-world │ ├── CMakeLists.txt │ ├── hello-world.c │ └── meson.build ├── meson.build └── shapes │ ├── CMakeLists.txt │ ├── decomp.c │ ├── decomp.h │ ├── global-array-fixed-read.c │ ├── global-array-fixed-write.c │ ├── mpivars.c │ └── mpivars.h ├── cpp ├── CMakeLists.txt ├── basics │ ├── CMakeLists.txt │ ├── meson.build │ ├── thread-write.cpp │ ├── variables-shapes-hl.cpp │ └── variables-shapes.cpp ├── gray-scott-struct │ ├── CMakeLists.txt │ ├── README.md │ ├── adios2-inline-plugin.xml │ ├── adios2.xml │ ├── analysis │ │ ├── curvature.cpp │ │ ├── find_blobs.cpp │ │ ├── isosurface.cpp │ │ └── pdf-calc.cpp │ ├── catalyst │ │ ├── gs-fides.json │ │ ├── gs-pipeline.py │ │ └── setup.sh │ ├── cleanup.sh │ ├── common │ │ └── timer.hpp │ ├── img │ │ ├── example1.jpg │ │ ├── example2.jpg │ │ ├── example3.jpg │ │ ├── example4.jpg │ │ └── example5.jpg │ ├── meson.build │ ├── plot │ │ ├── decomp.py │ │ ├── gsplot.py │ │ ├── pdfplot.py │ │ └── render_isosurface.cpp │ ├── simulation │ │ ├── LICENSE │ │ ├── gray-scott.cpp │ │ ├── gray-scott.h │ │ ├── json.hpp │ │ ├── main.cpp │ │ ├── restart.cpp │ │ ├── restart.h │ │ ├── settings-files.json │ │ ├── settings-inline.json │ │ ├── settings-staging.json │ │ ├── settings.cpp │ │ ├── settings.h │ │ ├── writer.cpp │ │ └── writer.h │ ├── test-firstrun.json │ ├── test-restart.json │ ├── visit-bp4.session │ ├── visit-bp4.session.gui │ ├── visit-sst.session │ └── visit-sst.session.gui ├── gray-scott │ ├── CMakeLists.txt │ ├── README.md │ ├── adios2-fides-staging.xml │ ├── adios2-inline-plugin.xml │ ├── adios2.xml │ ├── analysis │ │ ├── curvature.cpp │ │ ├── find_blobs.cpp │ │ ├── isosurface.cpp │ │ └── pdf-calc.cpp │ ├── catalyst │ │ ├── gs-fides.json │ │ ├── gs-pipeline.py │ │ └── setup.sh │ ├── cleanup.sh │ ├── common │ │ └── timer.hpp │ ├── img │ │ ├── example1.jpg │ │ ├── example2.jpg │ │ ├── example3.jpg │ │ ├── example4.jpg │ │ └── example5.jpg │ ├── meson.build │ ├── plot │ │ ├── decomp.py │ │ ├── gsplot.py │ │ ├── pdfplot.py │ │ └── render_isosurface.cpp │ ├── simulation │ │ ├── LICENSE │ │ ├── gray-scott.cpp │ │ ├── gray-scott.h │ │ ├── json.hpp │ │ ├── main.cpp │ │ ├── restart.cpp │ │ ├── restart.h │ │ ├── settings-files.json │ │ ├── settings-inline.json │ │ ├── settings-staging.json │ │ ├── settings.cpp │ │ ├── settings.h │ │ ├── writer.cpp │ │ └── writer.h │ ├── visit-bp4.session │ ├── visit-bp4.session.gui │ ├── visit-sst.session │ └── visit-sst.session.gui ├── hello-world │ ├── CMakeLists.txt │ ├── hello-world-hl.cpp │ ├── hello-world.cpp │ └── meson.build ├── korteweg-de-vries │ ├── CMakeLists.txt │ ├── KdV.cpp │ ├── README.md │ └── graph_solution.py ├── lorenz_ode │ ├── CMakeLists.txt │ ├── README.md │ ├── lorenz.hpp │ ├── lorenz_ode.svg │ ├── lorenz_reader.cpp │ ├── lorenz_writer.cpp │ ├── ode_phase_space.svg │ ├── ode_tuples.svg │ ├── second_derivative.svg │ └── taylor_series.svg └── meson.build ├── fortran ├── CMakeLists.txt ├── adios-module │ ├── CMakeLists.txt │ ├── Makefile │ ├── adiosio.F90 │ ├── main.F90 │ └── mpivars.F90 └── shapes │ ├── CMakeLists.txt │ ├── Makefile │ ├── decomp.F90 │ ├── global-array-changing-shape-write.F90 │ ├── global-array-fixed-read.F90 │ ├── global-array-fixed-write.F90 │ ├── mpivars.F90 │ ├── shapes-read.F90 │ ├── shapes-write.F90 │ ├── shapes.xml │ └── values.F90 ├── gpu ├── CMakeLists.txt ├── basics-cuda │ ├── CMakeLists.txt │ ├── cudaRoutines.cu │ ├── cudaRoutines.h │ └── write-read-cuda.cpp ├── basics-hip │ ├── CMakeLists.txt │ └── write-read-hip.cpp ├── basics-kokkos │ ├── CMakeLists.txt │ └── write-read-kokkos.cpp └── gray-scott-kokkos │ ├── CMakeLists.txt │ ├── README.md │ ├── gray-scott.cpp │ ├── gray-scott.h │ ├── json.hpp │ ├── main.cpp │ ├── restart.cpp │ ├── restart.h │ ├── settings.cpp │ ├── settings.h │ ├── timer.hpp │ ├── writer.cpp │ └── writer.h ├── julia └── GrayScott.jl │ ├── .JuliaFormatter.toml │ ├── Project.toml │ ├── ReadMe.md │ ├── examples │ └── settings-files.json │ ├── gray-scott.jl │ ├── scripts │ ├── config_crusher.sh │ ├── config_summit.sh │ ├── job_crusher.sh │ └── job_summit.sh │ ├── src │ ├── GrayScott.jl │ ├── analysis │ │ └── pdfcalc.jl │ ├── helper │ │ ├── Helper.jl │ │ ├── helperMPI.jl │ │ └── helperString.jl │ └── simulation │ │ ├── IO.jl │ │ ├── Inputs.jl │ │ ├── Simulation.jl │ │ ├── Simulation_AMDGPU.jl │ │ ├── Simulation_CUDA.jl │ │ └── Structs.jl │ └── test │ ├── Project.toml │ ├── functional │ └── functional-GrayScott.jl │ ├── runtests.jl │ └── unit │ ├── analysis │ └── unit-pdfcalc.jl │ ├── helper │ └── unit-helperMPI.jl │ └── simulation │ ├── unit-IO.jl │ ├── unit-Inputs.jl │ ├── unit-Simulation.jl │ └── unit-Simulation_CUDA.jl ├── manual-build ├── Makefile ├── Readme.md ├── example-mpi.F90 ├── example-mpi.c ├── example-mpi.cpp ├── example-serial.F90 ├── example-serial.c └── example-serial.cpp ├── meson.build └── python └── hello-world ├── hello-world-hl.py └── hello-world.py 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