├── .github └── workflows │ └── ci.yml ├── LICENSE.txt ├── README.md ├── filterCirc.awk ├── filterSpliceSiteCircles.pl ├── nrForwardSplicedReads.pl ├── postProcessStarAlignment.pl ├── runStar.pl ├── starCirclesToBed.pl ├── test.sh └── tests ├── data ├── SRR1197328_mbl_1.fastq.gz ├── SRR1197328_mbl_2.fastq.gz ├── mbl_locus.bed ├── mbl_locus.fa └── mbl_locus.gtf └── expected ├── Chimeric.out.sorted.bam ├── Chimeric.out.sorted.bam.bai ├── filteredJunctions.bed ├── s_filteredJunctions.bed └── s_filteredJunctions_fw.bed /.github/workflows/ci.yml: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/orzechoj/circRNA_finder/HEAD/.github/workflows/ci.yml -------------------------------------------------------------------------------- /LICENSE.txt: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/orzechoj/circRNA_finder/HEAD/LICENSE.txt 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